CmaCh12G012890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G012890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L28-2-like
Location	Cma_Chr12: 10001438 .. 10003368 (-)
RNA-Seq Expression	CmaCh12G012890
Synteny	CmaCh12G012890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATCGGTTGGAGCTCTGGTAAGCGGCTGACTCAACCTGCGTAGCCTCTTCGACTTGTTGCAGCGCAGGTCCGCTTCTTCTTCCACCTTTCATATTTTTTTTCTTTCAATTTCATCATCTTCAATCTGTTTTCTCCCATTTTTGGATTACTGCATCCTTACTTTTGTTGCTGATTTCCGTTACTTTTGTAGATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAGCCTCAACTCCTACAAGCATTCCGGTAAGAAAAACATCTTTTACTTGTTAAGTATAATCGTTTTGAACTTGAGGAAAATATGAGGAATCGGCTGCCATTTTTTGTTCTGCACATTTCCTTCCGGAATGGTTATTGAATCTTGTTTTAGTTCTTAGAAAGTGTTGGGAGGATTTATCTTATTTTATTTGCGTTGTGGAATGTTTTTGGGGACTCTTTCAGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATGTTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAATCAATTACAAGGAAGGAATTTCCTCGCATGCTTAAGACTGTGACTAATCAGGTAAACTCTACACTTCATTTTTTTAATTGATGCCCACTCAGGTGTAATTCAATATTGGATGTTTGTTGATTCTGCCTGCATTTATCATTGGTCGTGCTTGGTTAATCAGGGAATTATTATGTTATTAAGAAGCTGCCAATAAAGATTTTCGGTTTTGTAGTTTTTTAGAGATCGTAATTGAACTGAATTGCATTGTTACAGTGACAGGAAGCTAACATGTTAGAAGGGTCACTTTTGTATCTGTATCTTCGATGAAATATATTTGTTATGCCTGTCTTCTGAGCACAATTTTCCTATCGTTTCAAAAGTCAAAAGTTTGAATCTCTCATTTTAGTTCGTTGAACTCACCAAGAACGTTTAAAACTGTTGGTGCGATGATAACCTGTTAACATCTAAGAAGGTCCCTTTTGTAGTGGCATCTTCAATGAAATTTATTTGCTTCATTCATCTTCTGTCATTTATTTGCCTAGATTAAAATCTTTTCTTCATGTAATTTTCCTCAACTTAGATTAAAATCATATATCATTCTGCCCCAGAAAGTTTAGTAAAAACTAGGGGGACGGGCTTAAACTTAACTGTTAATGCGATGATGAGCTGCTAACATCAATCTAAGAAGGTCCCTTTTGTAGTGGCATCTTCATTGAAATCTGTTTGTTACGCTTGGCTTCTGAGCATCAATGTAAATTTAGTAGATGATGTTGGTTGGGATCTTAATTCTAACTCTACCCGGGAAGAAGGCCTGTTCTTGGTTTACTTCTGATTGCATCAAATTAGAATTTTCTAAATCTGTTTTTTCTGGATAATAATGAACAACTAAACTTCTATGAAGAAAAGATGAAAGAAGTTGTTGAATGTATGGTATGCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGTCTTAAGGTTGCCAAGTCTGGTGTGAAGACGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTATAAGGGTTGTTTTCATTCTTCCACTATTACAACTTTTATTTACTTTAATTTTGAATTCTTATGTACCCTACTTGAAATCTATTTAGGATCTTTGACCATCCCATTTCTATTTTAGGTTATATTTGATTTATGTACTCTTACATCATCCGATGATACCCTATGGCTGACTACTCCATATCCATAATACTAAAATCTTAGAATGACTTTTCACA

mRNA sequence

TAAAATCGGTTGGAGCTCTGGTAAGCGGCTGACTCAACCTGCGTAGCCTCTTCGACTTGTTGCAGCGCAGATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAGCCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATGTTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAATCAATTACAAGGAAGGAATTTCCTCGCATGCTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGTCTTAAGGTTGCCAAGTCTGGTGTGAAGACGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTATAAGGGTTGTTTTCATTCTTCCACTATTACAACTTTTATTTACTTTAATTTTGAATTCTTATGTACCCTACTTGAAATCTATTTAGGATCTTTGACCATCCCATTTCTATTTTAGGTTATATTTGATTTATGTACTCTTACATCATCCGATGATACCCTATGGCTGACTACTCCATATCCATAATACTAAAATCTTAGAATGACTTTTCACA

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAGTTGGTGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAGCCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGCAGGGGGCAAGGATTTGTCAATGTTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAATCAATTACAAGGAAGGAATTTCCTCGCATGCTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGTCTTAAGGTTGCCAAGTCTGGTGTGAAGACGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQAGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALAKLSAVHRSLKVAKSGVKTRNRQAIKTRGRK

Homology

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BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL ++NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL +++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 3   NVPGQLVWEIVKKNSSFLVK--EFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 62
           +V   L+W++++ N+ FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPR-MLKTVTNQVADNYYRPDLKNAAL 122
           A      +LI  T  K   KPA L  K +      R   K++  ++    YR DL   ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 AKLSAVHRSLKVAKS 135
           A+ SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot
Match: P17702 (60S ribosomal protein L28 OS=Rattus norvegicus OX=10116 GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQAGGKDLS 67
           L W +V+  SSFL+K   +      +S EPNNL + NS++++GL +RKTV ++A      
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKG 64

Query: 68  MLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALAKLSAVHR 127
           +++   +   Q KPA+   ++   K     L ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQAGGKDLS 67
           L W +V+  SSFL+K   +      +S EPNNL + NS++++GL +RKTV ++       
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  MLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALAKLSAVHR 127
           +++   +   Q KPA+   ++   K     L ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL
Match: A0A6J1HQK6 (60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465713 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL
Match: A0A6J1HSF8 (60S ribosomal protein L28-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465713 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTR 140
           KLSAVHRSLKVAKSGVKTR
Sbjct: 121 KLSAVHRSLKVAKSGVKTR 139

[Close]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 134/150 (89.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLS VHRSLKVAKSGVK RNRQA+KTRGRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 134/150 (89.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNA VQFSKEPNNLYSLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+AT+KTKKQNKPA+ LHKS+ RKEFPRM K VTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVAKSGVK  NRQA++TRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. NCBI nr
Match: XP_022965993.1 (60S ribosomal protein L28-2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. NCBI nr
Match: XP_022938097.1 (60S ribosomal protein L28-2-like [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 4.1e-72
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. NCBI nr
Match: KAG6586468.1 (60S ribosomal protein L28-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 144/150 (96.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           M NVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MPNVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. NCBI nr
Match: KAG7021324.1 (60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-71
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of CmaCh12G012890 vs. NCBI nr
Match: XP_022965994.1 (60S ribosomal protein L28-2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTR 140
           KLSAVHRSLKVAKSGVKTR
Sbjct: 121 KLSAVHRSLKVAKSGVKTR 139

[Close]

BLAST of CmaCh12G012890 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-52
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL ++NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-52
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL ++NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-52
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL +++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-52
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL +++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of CmaCh12G012890 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-52
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL +++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120
           A  KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKTRNRQA 144
           +LSA+ + L+VAKSG K RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of CmaCh12G012890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	1.4e-51	71.33	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	1.8e-51	71.33	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	1.3e-12	34.07	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
P17702	2.9e-12	34.15	60S ribosomal protein L28 OS=Rattus norvegicus OX=10116 GN=Rpl28 PE=1 SV=4	[more]
Q3T0L7	3.7e-12	33.33	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]

BLAST of CmaCh12G012890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQK6	1.2e-74	100.00	60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FD25	2.0e-72	96.67	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A6J1HSF8	5.9e-69	100.00	60S ribosomal protein L28-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DMI9	5.5e-67	89.33	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A1S3CAX2	2.1e-66	89.33	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]

BLAST of CmaCh12G012890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965993.1	2.5e-74	100.00	60S ribosomal protein L28-2-like isoform X1 [Cucurbita maxima]	[more]
XP_022938097.1	4.1e-72	96.67	60S ribosomal protein L28-2-like [Cucurbita moschata]	[more]
KAG6586468.1	1.5e-71	96.00	60S ribosomal protein L28-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7021324.1	4.5e-71	95.33	60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965994.1	1.2e-68	100.00	60S ribosomal protein L28-2-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CmaCh12G012890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	1.0e-52	71.33	Ribosomal L28e protein family	[more]
AT4G29410.2	1.0e-52	71.33	Ribosomal L28e protein family	[more]
AT2G19730.1	1.3e-52	71.33	Ribosomal L28e protein family	[more]
AT2G19730.2	1.3e-52	71.33	Ribosomal L28e protein family	[more]
AT2G19730.3	1.3e-52	71.33	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 9.3E-33 score: 113.4
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 1.2E-41 score: 144.1
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G012890.1	CmaCh12G012890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome