CmaCh12G012270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G012270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	FBD domain-containing protein
Location	Cma_Chr12: 9570789 .. 9571321 (+)
RNA-Seq Expression	CmaCh12G012270
Synteny	CmaCh12G012270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCGCCGCCCTCCTCCGCTCCTCCGCTCCTCCGCTCCTCCGCCATGGCCTCCCCCTACGATCCCACTTCTCGGTCAGTCTTTGCAAATTCCTTCTCTGTTTTCTCATAGATGTTCGATTCATTTTCATTCGCATTAACATCGCTTATTGTTGAAAAAGGGAGGCGTTTCCTAAGAAGAAATCAGCCCCATTCAAGTTCTTGGTTCCTCTCATCTATGCCCCTGTTCTTCCTCTCAGTAAGTTTAATTTTCTGGGTTTCTCTCTTTTCCGATCATTTTGGATGATTTTCAATCTGGGTTTGTTCGAATTTGAGTTTAAATTTTGTTTTTCAGTTAGAATTGCGCTGCGGAAGAATCCTGTTGTGAGGGATCGGCTTTTCACGGCGGTTTTAGCTGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCTTTTATCTCTTGCATTTGCTTTGATCATTGTTCATATCATATTGCAATGCGAATTCTTGATCTGAGATTTCAATGTTTGTCTGTTTGGTCGTTGTTGATCTGA

mRNA sequence

CCTCCGCCGCCCTCCTCCGCTCCTCCGCTCCTCCGCTCCTCCGCCATGGCCTCCCCCTACGATCCCACTTCTCGGGAGGCGTTTCCTAAGAAGAAATCAGCCCCATTCAAGTTCTTGGTTCCTCTCATCTATGCCCCTGTTCTTCCTCTCATTAGAATTGCGCTGCGGAAGAATCCTGTTGTGAGGGATCGGCTTTTCACGGCGGTTTTAGCTGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCTTTTATCTCTTGCATTTGCTTTGATCATTGTTCATATCATATTGCAATGCGAATTCTTGATCTGAGATTTCAATGTTTGTCTGTTTGGTCGTTGTTGATCTGA

Coding sequence (CDS)

ATGGCCTCCCCCTACGATCCCACTTCTCGGGAGGCGTTTCCTAAGAAGAAATCAGCCCCATTCAAGTTCTTGGTTCCTCTCATCTATGCCCCTGTTCTTCCTCTCATTAGAATTGCGCTGCGGAAGAATCCTGTTGTGAGGGATCGGCTTTTCACGGCGGTTTTAGCTGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCTTTTATCTCTTGCATTTGCTTTGATCATTGTTCATATCATATTGCAATGCGAATTCTTGATCTGAGATTTCAATGTTTGTCTGTTTGGTCGTTGTTGATCTGA

Protein sequence

MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYPFISCICFDHCSYHIAMRILDLRFQCLSVWSLLI

Homology

[Close]

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL
Match: A0A6J1HSI9 (uncharacterized protein LOC111465738 OS=Cucurbita maxima OX=3661 GN=LOC111465738 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
          MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60

Query: 61 HGFYLV 67
          HGFYLV
Sbjct: 61 HGFYLV 66

[Close]

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL
Match: A0A6J1FDN8 (uncharacterized protein LOC111444436 OS=Cucurbita moschata OX=3662 GN=LOC111444436 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
           MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 79  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 138

Query: 61  HGFYLV 67
           HGFYLV
Sbjct: 139 HGFYLV 144

[Close]

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL
Match: A0A1S3C7Y6 (uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MAS-PYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MAS P DP+SREAFP+K+SAPFKFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAF
Sbjct: 1  MASPPVDPSSREAFPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60

Query: 61 AHGFYLV 67
          AHGFYLV
Sbjct: 61 AHGFYLV 67

[Close]

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL
Match: A0A0A0LF45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006000 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4  PYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 63
          P DP+SREAFP+K+SAP+KFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF
Sbjct: 5  PVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 64

Query: 64 YLV 67
          YLV
Sbjct: 65 YLV 67

[Close]

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL
Match: A0A6J1KDE7 (uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
          MA+P+D  SRE  PKK+SAP KFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 1  MAAPFDSNSREGVPKKRSAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60

Query: 61 HGFYLV 67
          HGFYLV
Sbjct: 61 HGFYLV 66

[Close]

BLAST of CmaCh12G012270 vs. NCBI nr
Match: KAG7021264.1 (hypothetical protein SDJN02_17952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
           MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 43  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 102

Query: 61  HGFYLVYPFISCICFDHCSYH 82
           HGFYLVYPFISCICFDHCSYH
Sbjct: 103 HGFYLVYPFISCICFDHCSYH 123

[Close]

BLAST of CmaCh12G012270 vs. NCBI nr
Match: XP_022966034.1 (uncharacterized protein LOC111465738 [Cucurbita maxima] >XP_023536899.1 uncharacterized protein LOC111798144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
          MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60

Query: 61 HGFYLV 67
          HGFYLV
Sbjct: 61 HGFYLV 66

[Close]

BLAST of CmaCh12G012270 vs. NCBI nr
Match: KAG6586409.1 (hypothetical protein SDJN03_19142, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
           MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 43  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 102

Query: 61  HGFYLV 67
           HGFYLV
Sbjct: 103 HGFYLV 108

[Close]

BLAST of CmaCh12G012270 vs. NCBI nr
Match: XP_022938302.1 (uncharacterized protein LOC111444436 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
           MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 79  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 138

Query: 61  HGFYLV 67
           HGFYLV
Sbjct: 139 HGFYLV 144

[Close]

BLAST of CmaCh12G012270 vs. NCBI nr
Match: XP_038891090.1 (uncharacterized protein LOC120080491 isoform X1 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
          MA+P+DP+SREA P+K+SAPFKFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA
Sbjct: 1  MAAPFDPSSREAVPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60

Query: 61 HGFYLVYPF 70
          HGFYLVY F
Sbjct: 61 HGFYLVYRF 69

[Close]

BLAST of CmaCh12G012270 vs. TAIR 10
Match: AT1G68680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-18
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFA 60
          MAS  DP+      KKK AP KFLVPLIYAP LPLIR++LR  PV+RDRLF  VL GAFA
Sbjct: 1  MASSSDPSKPVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGAFA 60

Query: 61 HGFYLV 67
          HGFYLV
Sbjct: 61 HGFYLV 66

The following BLAST results are available for this feature:

BLAST of CmaCh12G012270 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G012270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSI9	2.2e-27	100.00	uncharacterized protein LOC111465738 OS=Cucurbita maxima OX=3661 GN=LOC111465738...	[more]
A0A6J1FDN8	2.2e-27	100.00	uncharacterized protein LOC111444436 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A1S3C7Y6	1.1e-23	91.04	uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=...	[more]
A0A0A0LF45	3.3e-23	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006000 PE=4 SV=1	[more]
A0A6J1KDE7	1.3e-22	86.36	uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883...	[more]

BLAST of CmaCh12G012270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021264.1	5.7e-38	100.00	hypothetical protein SDJN02_17952, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022966034.1	4.6e-27	100.00	uncharacterized protein LOC111465738 [Cucurbita maxima] >XP_023536899.1 uncharac...	[more]
KAG6586409.1	4.6e-27	100.00	hypothetical protein SDJN03_19142, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938302.1	4.6e-27	100.00	uncharacterized protein LOC111444436 [Cucurbita moschata]	[more]
XP_038891090.1	3.3e-25	88.41	uncharacterized protein LOC120080491 isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh12G012270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68680.1	4.1e-18	69.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37713	OS05G0176600 PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G012270.1	CmaCh12G012270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane