CmaCh12G012230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G012230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 39-like
Location	Cma_Chr12: 9531573 .. 9533571 (+)
RNA-Seq Expression	CmaCh12G012230
Synteny	CmaCh12G012230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCATTTTGGCGATTTGAGATTCCATGGATTTGAATTTTTAGCCTTCGCAATATCTGATTTTTCTAGGGTTTTCATTCTCCTTGGCGGCTAGGGTTTTTGATTAATGGATCAGTTTTGTTTTCCTTTTCCCGTTTTTTCGTCGTTCTTACATTTGTCTTCCCTTTTGCCGCTTTCAAAATATATAAATATATAACTACTACTCCTCCACTTTCGCCATTGTTTTGATTTGATTCCGTCTTCCATTTATCTCGATTCCGCCGGCATATGCGTTTCCGAACGCTGTTTTGATCATAATTTGAAACTTTGACGAATTCGACTTTGATTTTGGTCAGTATCATCTGTGCTCTTCTTTCCGAGGCTGTTTTTGGTACTCTTTTCGATTTTTTTTTGGATATCTCCTTTAGTTTGTTGTTTTTCTGGTGTTTCATCACATCGGTACAAGCGTTGGTTCTGTAAGGAATTTTGTTCTGTGATCGTTGTTCAAGCAGAATTTGTAATTTATTCTCTAGATTGAAATTAAGGTTGTTGATTCGTTGTGTTTATTGATCGAAGAGACCTGGATTTGATTTTAGAAGATGAATTTCAATGATATCCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCGGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTCCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGGTATTGATACCTCTCCTTTTCTCTTTCTCTGTAATGTGAAATACTGTCATAACATGACTCTTAATTTATTTAGTATCTTTGTCGTGGTGTCCTCTTTGAAGCGTTTGACATTGTGATTATACGACTTTGGGATGTTGACTGTTCTTTATGGATCAGTAAAGTCAGTTCCAAACAAACTCTTAATTTCCTCTTTGGAGCGTTTGACATTGTTTGATTATACTACTTCGGGATGTTGACTGTTTTTTATGGATCAGAGTTGCAACTCTCTCTTGGACGCGAGGGGCAAGTATCTAATCCTGCCCTCAACATAAATCCTCTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTCTCTCCAACCTCAGCCAGCAAATTGGATGTTTGAGTGTTTTTGAGTTGGAAGTTGTTTGTTCTTGATTTGTTTTGAAATTGGTTTTGGTGAGATTCAATTGATTAGTTTCAATATGGGGGTTGGGTTGGTGCTGGTTTTTCTGAATCATTGAGTGTAAAAAAGCAGTTTTGCTGAGAGTTTTTTTTGGGGGTATGGAAAGAAGAGAGAGAGAGAG

mRNA sequence

TTCCATTTTGGCGATTTGAGATTCCATGGATTTGAATTTTTAGCCTTCGCAATATCTGATTTTTCTAGGGTTTTCATTCTCCTTGGCGGCTAGGGTTTTTGATTAATGGATCAGTTTTGTTTTCCTTTTCCCGTTTTTTCGTCGTTCTTACATTTGTCTTCCCTTTTGCCGCTTTCAAAATATATAAATATATAACTACTACTCCTCCACTTTCGCCATTGTTTTGATTTGATTCCGTCTTCCATTTATCTCGATTCCGCCGGCATATGCGTTTCCGAACGCTGTTTTGATCATAATTTGAAACTTTGACGAATTCGACTTTGATTTTGGTCAGTATCATCTGTGCTCTTCTTTCCGAGGCTGTTTTTGGTACTCTTTTCGATTTTTTTTTGGATATCTCCTTTAGTTTGTTGTTTTTCTGGTGTTTCATCACATCGGTACAAGCGTTGGTTCTGTAAGGAATTTTGTTCTGTGATCGTTGTTCAAGCAGAATTTGTAATTTATTCTCTAGATTGAAATTAAGGTTGTTGATTCGTTGTGTTTATTGATCGAAGAGACCTGGATTTGATTTTAGAAGATGAATTTCAATGATATCCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCGGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTCCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTGCAACTCTCTCTTGGACGCGAGGGGCAAGTATCTAATCCTGCCCTCAACATAAATCCTCTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTCTCTCCAACCTCAGCCAGCAAATTGGATGTTTGAGTGTTTTTGAGTTGGAAGTTGTTTGTTCTTGATTTGTTTTGAAATTGGTTTTGGTGAGATTCAATTGATTAGTTTCAATATGGGGGTTGGGTTGGTGCTGGTTTTTCTGAATCATTGAGTGTAAAAAAGCAGTTTTGCTGAGAGTTTTTTTTGGGGGTATGGAAAGAAGAGAGAGAGAGAG

Coding sequence (CDS)

ATGAATTTCAATGATATCCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCGGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTCCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTGCAACTCTCTCTTGGACGCGAGGGGCAAGTATCTAATCCTGCCCTCAACATAAATCCTCTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTCTCTCCAACCTCAGCCAGCAAATTGGATGTTTGA

Protein sequence

MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQSRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLDV

Homology

[Close]

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.3e-77
Identity = 161/345 (46.67%), Postives = 200/345 (57.97%), Query Frame = 0


Query: 34  NDLFDTQSQFEPQ---LPPFKRARNSEEN---------QSRVQN---------GPVNKGI 93
           + L ++QSQ +P     P  KR R  ++N         Q    N          PVNKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 94  NNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG------------IRE 153
            NIF+KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 154 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 213
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 214 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNG---NAFWKTKLCTKWEV 273
            RESS IS+G T     +   S+  E +R  S P    +   G     +WKT+LC K+++
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 274 TGHCPFGDKCHFAHGQSELQLSLGR-EGQVSNPALNIN-----PLVVAMEASPSLAASVA 328
           TG CPFGDKCHFAHGQ+EL  S+GR EG+  N   ++N     P   A    P    +  
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

[Close]

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.1e-46
Identity = 111/323 (34.37%), Postives = 157/323 (48.61%), Query Frame = 0


Query: 46  QLPPFKRARNSEENQSRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDM 105
           Q PP K++R     +    N   ++ I  +FFKT++C KF+ G C    NCNFAHG E++
Sbjct: 58  QPPPGKKSRGGGGGEGG-GNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEEL 117

Query: 106 RQPPPNWQEIVGIREDDQSVSNWNDDQKI--------------------------IQKMK 165
           R+PPPNWQEIV   E+    +   ++ +I                            K +
Sbjct: 118 RKPPPNWQEIVAAHEE---ATEAREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGR 177

Query: 166 LCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEP 225
            C+KFY  E CPYGD C FLH       D+  + RES AIS+    +P + G     S  
Sbjct: 178 HCKKFYTDEGCPYGDACTFLH-------DEQSKARESVAISL----SPSVGGGGGGGSYN 237

Query: 226 SRAVSCPASDSLRGNG----NAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGRE 285
           S A +  ++ +  GNG     + WKT++C KWE+TG+CPFG KCHFAHG +EL    G  
Sbjct: 238 SAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGL 297

Query: 286 GQVSNPALNINP---LVVAMEASPSLAASVATSPLP--------------------EGQA 316
             + +      P     V    +P+  A+ +T+ LP                     GQ 
Sbjct: 298 VDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQV 357

[Close]

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-43
Identity = 117/361 (32.41%), Postives = 159/361 (44.04%), Query Frame = 0


Query: 18  YGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQSRVQNGPVN---KGINN 77
           +    D    W+  P N   D         PP K+ R S  + S       +   K I  
Sbjct: 36  WATEDDYNRAWAMNPDNTSGDNNG------PPNKKTRGSPSSSSATTTSAASNRTKAIGK 95

Query: 78  IFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKI 137
           +FFKT++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S         +
Sbjct: 96  MFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSV 155

Query: 138 IQ----------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 197
           ++                      K + C+KFY  E CPYG+ C FLH       D++ R
Sbjct: 156 VEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASR 215

Query: 198 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGN------------AFWK 257
            RES AIS+G        G  S         S      L G G             + WK
Sbjct: 216 NRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWK 275

Query: 258 TKLCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGQVSNPALN---INPLVV 317
           T++C KWE+TG+CPFG KCHFAHG +EL           G++G   NP       NP  +
Sbjct: 276 TRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGL 335

[Close]

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.3e-24
Identity = 88/327 (26.91%), Postives = 131/327 (40.06%), Query Frame = 0


Query: 12  PPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQSRVQNGPVNKG 71
           PPP + +  +GD++   ++   + ++   S  +    P K+ R+S  ++           
Sbjct: 20  PPPENCFPNSGDSSVWATEDDYSRVWAINS--DGAESPSKKTRSSSSSE----------- 79

Query: 72  INNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMR---QPPPNWQEIVGIREDDQSVSN 131
           I   FFKT++C KF+ G C  + ++C+FAH AE++R    PPPNWQE V           
Sbjct: 80  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 139

Query: 132 WNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTP 191
                                                    ++ R RES A+S+G     
Sbjct: 140 ----------------------------------------TEASRNRESFAVSLG----- 199

Query: 192 LMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSE 251
                             P  +  +   +  WKT++C KW+ TG+CPFG  CHFAHG SE
Sbjct: 200 ------------------PRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 251

Query: 252 LQ------------------LSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPE 311
           L                   L   + GQV      ++P V       S   S A +  P 
Sbjct: 260 LHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV------SSQRTSSAVTQKPN 251

Query: 312 GQAKPCLLKWKGPKKINRIYADWLDDL 317
           G       KWKGP KI+R+Y DW+DD+
Sbjct: 320 GVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot
Match: Q7XPK1 (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-11
Identity = 38/114 (33.33%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 137 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSY 196
           K+K C KF++   CP+G+ C+F H  P  ++                 V   +N  + + 
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ----------------AVAKTLNLGNPAV 98

Query: 197 SEPSRAVSCPASDSLRGNGN--AFWKTKLCTKWEVTGHCPFGDKCHFAHGQSEL 249
             P+RA   P   +  GN +  +  KT++CTK+     C FGDKCHFAHG+ EL
Sbjct: 99  PAPARA---PMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

[Close]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1HLD8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111465601 PE=4 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 1.9e-197
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ
Sbjct: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240
           IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240

Query: 241 FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK 300
           FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK
Sbjct: 241 FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK 300

Query: 301 GPKKINRIYADWLDDLPLSPTSASKLDV 329
           GPKKINRIYADWLDDLPLSPTSASKLDV
Sbjct: 301 GPKKINRIYADWLDDLPLSPTSASKLDV 328

[Close]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1FBA3 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111443870 PE=4 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 8.6e-190
Identity = 320/330 (96.97%), Postives = 325/330 (98.48%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FNDIRGSVIPPPLHPYGA+ DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEEN 
Sbjct: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATSPLPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLDV 329
           WKGPKKINRIYADWLDDLPLSPTSASKL+V
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLEV 329

[Close]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1G2M8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111450240 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.1e-164
Identity = 282/344 (81.98%), Postives = 301/344 (87.50%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FND+RGSVIPPPLH YGANGDA+GCWSQYPRNDLFD QSQFE Q PPFKRARN EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  ------------SRVQ--NGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
                       SRVQ  N P+NKGINNIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGN---AFWKTKL 240
           RDDSGRFRESSAISIGTT TPL+NG+DSSY EP +A S    D+LR NGN   +FWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVA 300
           CTKWE+TGHCPFG+KCHFAHGQSELQLS+GREG+VSN ALN+ PLVVAMEA  SLA SV 
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 TSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLD 328
           +S LPEGQAK  LLKWKGPKKINRIYADWLDDLPLSP+S S+L+
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLE 344

[Close]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1KJ53 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111493694 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 1.7e-161
Identity = 279/344 (81.10%), Postives = 298/344 (86.63%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FND+RGSVIPPPLH YGANGDA+GCWSQYPRNDLFD QSQFE Q PPFKRAR  EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  ------------SRVQ--NGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
                       SRVQ  N P+NKGINNIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGN---AFWKTKL 240
           RDDSGRFRESSAISIGTT TPLMNG+DSSY EP +A S    D+LR NGN   +FWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVA 300
           CTKWE+TGHCPFG+KCHFAHGQSELQLS+GREG+VSN ALN+ PLVVAMEA     +SV 
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEA----PSSVP 300

Query: 301 TSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLD 328
           +S LPEGQAK  LLKWKGPKKINRIYADWLDDLPLSP+S S+L+
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLE 340

[Close]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL
Match: A0A5A7V7E5 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00080 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.2e-161
Identity = 277/346 (80.06%), Postives = 299/346 (86.42%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FND+RGSVIPPPLH YG+NGDA+GCWSQ+PRND FD QSQFE Q PP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S                 N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCPASDSLRGNGN---AFWKTK 240
           RDDSGRFRESSAISIGTT TPLMNG+D SSY EPSRA SC  SD+LR NGN   +FWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASV 300
           LCTKWE+TGHCPFGDKCHFAHGQSELQL +GREG+VS  ALN+ PL+VAMEAS SL  SV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 -ATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLD 328
             +S LPEGQAKP LLKWKGPKKINRIYADWLDDLPLSP+S SK++
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]

BLAST of CmaCh12G012230 vs. NCBI nr
Match: XP_022965837.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 698.0 bits (1800), Expect = 4.0e-197
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ
Sbjct: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240
           IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240

Query: 241 FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK 300
           FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK
Sbjct: 241 FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK 300

Query: 301 GPKKINRIYADWLDDLPLSPTSASKLDV 329
           GPKKINRIYADWLDDLPLSPTSASKLDV
Sbjct: 301 GPKKINRIYADWLDDLPLSPTSASKLDV 328

[Close]

BLAST of CmaCh12G012230 vs. NCBI nr
Match: XP_023536864.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 681.4 bits (1757), Expect = 3.8e-192
Identity = 318/328 (96.95%), Postives = 326/328 (99.39%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ
Sbjct: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGP+NKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPMNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240
           IGTTVTPL NGNDSSYSEPSRAVSC ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH
Sbjct: 181 IGTTVTPLTNGNDSSYSEPSRAVSCSASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCH 240

Query: 241 FAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLKWK 300
           FAHG+SELQLSLGREG+VSNPALNINPLVVAMEASP+LAASVATSPLPEGQAKPCLLKWK
Sbjct: 241 FAHGRSELQLSLGREGEVSNPALNINPLVVAMEASPNLAASVATSPLPEGQAKPCLLKWK 300

Query: 301 GPKKINRIYADWLDDLPLSPTSASKLDV 329
           GPKKINRIYADWL+DLPLSPTSA+KL+V
Sbjct: 301 GPKKINRIYADWLEDLPLSPTSANKLEV 328

[Close]

BLAST of CmaCh12G012230 vs. NCBI nr
Match: KAG6586406.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 673.3 bits (1736), Expect = 1.0e-189
Identity = 319/330 (96.67%), Postives = 323/330 (97.88%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FNDIRGSVIPPPLHPYGANGDATGCWSQYPRND FDTQSQFEPQ PPFKRARNSEEN 
Sbjct: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATS LPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLDV 329
           WKGPKKINRIYADWLDDLPLSPTSASKL+V
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLEV 330

[Close]

BLAST of CmaCh12G012230 vs. NCBI nr
Match: XP_022937467.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 672.5 bits (1734), Expect = 1.8e-189
Identity = 320/330 (96.97%), Postives = 325/330 (98.48%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FNDIRGSVIPPPLHPYGA+ DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEEN 
Sbjct: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATSPLPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLDV 329
           WKGPKKINRIYADWLDDLPLSPTSASKL+V
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLEV 329

[Close]

BLAST of CmaCh12G012230 vs. NCBI nr
Match: KAG7021260.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 671.8 bits (1732), Expect = 3.0e-189
Identity = 318/329 (96.66%), Postives = 322/329 (97.87%), Query Frame = 0


Query: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60
           M+FNDIRGSVIPPPLHPYGANGDATGCWSQYPRND FDTQSQFEPQ PPFKRARNSEEN 
Sbjct: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATS LPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLD 328
           WKGPKKINRIYADWLDDLPLSPTSASKL+
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLE 329

[Close]

BLAST of CmaCh12G012230 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 290.0 bits (741), Expect = 2.3e-78
Identity = 161/345 (46.67%), Postives = 200/345 (57.97%), Query Frame = 0


Query: 34  NDLFDTQSQFEPQ---LPPFKRARNSEEN---------QSRVQN---------GPVNKGI 93
           + L ++QSQ +P     P  KR R  ++N         Q    N          PVNKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 94  NNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG------------IRE 153
            NIF+KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 154 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 213
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 214 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNG---NAFWKTKLCTKWEV 273
            RESS IS+G T     +   S+  E +R  S P    +   G     +WKT+LC K+++
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 274 TGHCPFGDKCHFAHGQSELQLSLGR-EGQVSNPALNIN-----PLVVAMEASPSLAASVA 328
           TG CPFGDKCHFAHGQ+EL  S+GR EG+  N   ++N     P   A    P    +  
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

[Close]

BLAST of CmaCh12G012230 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-44
Identity = 117/361 (32.41%), Postives = 159/361 (44.04%), Query Frame = 0


Query: 18  YGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQSRVQNGPVN---KGINN 77
           +    D    W+  P N   D         PP K+ R S  + S       +   K I  
Sbjct: 36  WATEDDYNRAWAMNPDNTSGDNNG------PPNKKTRGSPSSSSATTTSAASNRTKAIGK 95

Query: 78  IFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKI 137
           +FFKT++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S         +
Sbjct: 96  MFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSV 155

Query: 138 IQ----------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 197
           ++                      K + C+KFY  E CPYG+ C FLH       D++ R
Sbjct: 156 VEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASR 215

Query: 198 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCPASDSLRGNGN------------AFWK 257
            RES AIS+G        G  S         S      L G G             + WK
Sbjct: 216 NRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWK 275

Query: 258 TKLCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGQVSNPALN---INPLVV 317
           T++C KWE+TG+CPFG KCHFAHG +EL           G++G   NP       NP  +
Sbjct: 276 TRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGL 335

[Close]

BLAST of CmaCh12G012230 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-25
Identity = 88/327 (26.91%), Postives = 131/327 (40.06%), Query Frame = 0


Query: 12  PPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQSRVQNGPVNKG 71
           PPP + +  +GD++   ++   + ++   S  +    P K+ R+S  ++           
Sbjct: 20  PPPENCFPNSGDSSVWATEDDYSRVWAINS--DGAESPSKKTRSSSSSE----------- 79

Query: 72  INNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMR---QPPPNWQEIVGIREDDQSVSN 131
           I   FFKT++C KF+ G C  + ++C+FAH AE++R    PPPNWQE V           
Sbjct: 80  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 139

Query: 132 WNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTP 191
                                                    ++ R RES A+S+G     
Sbjct: 140 ----------------------------------------TEASRNRESFAVSLG----- 199

Query: 192 LMNGNDSSYSEPSRAVSCPASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSE 251
                             P  +  +   +  WKT++C KW+ TG+CPFG  CHFAHG SE
Sbjct: 200 ------------------PRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 251

Query: 252 LQ------------------LSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPE 311
           L                   L   + GQV      ++P V       S   S A +  P 
Sbjct: 260 LHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV------SSQRTSSAVTQKPN 251

Query: 312 GQAKPCLLKWKGPKKINRIYADWLDDL 317
           G       KWKGP KI+R+Y DW+DD+
Sbjct: 320 GVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of CmaCh12G012230 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 33/128 (25.78%), Postives = 57/128 (44.53%), Query Frame = 0


Query: 57  EENQSRVQNGPVNKGINNIFFKTRMCAKF-KLGLCRNGANCNFAHGAEDMRQPPPNWQEI 116
           E+ +  ++    N+G+     KT +C K+ + G C  G +C FAHG +++R         
Sbjct: 207 EDQEEEIEVEVYNQGMT----KTELCNKWQETGTCPYGDHCQFAHGIKELRPV------- 266

Query: 117 VGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRE 176
             IR                 K ++CR    G+ CPYG RC+F H    + +  +  F+ 
Sbjct: 267 --IRHPR-------------YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKP 308

Query: 177 SSAISIGT 184
            S++ + T
Sbjct: 327 KSSLKLIT 308

[Close]

BLAST of CmaCh12G012230 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 33/128 (25.78%), Postives = 57/128 (44.53%), Query Frame = 0


Query: 57  EENQSRVQNGPVNKGINNIFFKTRMCAKF-KLGLCRNGANCNFAHGAEDMRQPPPNWQEI 116
           E+ +  ++    N+G+     KT +C K+ + G C  G +C FAHG +++R         
Sbjct: 206 EDQEEEIEVEVYNQGMT----KTELCNKWQETGTCPYGDHCQFAHGIKELRPV------- 265

Query: 117 VGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRE 176
             IR                 K ++CR    G+ CPYG RC+F H    + +  +  F+ 
Sbjct: 266 --IRHPR-------------YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKP 307

Query: 177 SSAISIGT 184
            S++ + T
Sbjct: 326 KSSLKLIT 307

The following BLAST results are available for this feature:

BLAST of CmaCh12G012230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	3.3e-77	46.67	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	5.1e-46	34.37	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LQM3	2.4e-43	32.41	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5PP65	9.3e-24	26.91	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7XPK1	4.1e-11	33.33	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmaCh12G012230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLD8	1.9e-197	100.00	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FBA3	8.6e-190	96.97	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1G2M8	2.1e-164	81.98	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KJ53	1.7e-161	81.10	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V7E5	2.2e-161	80.06	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of CmaCh12G012230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965837.1	4.0e-197	100.00	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]
XP_023536864.1	3.8e-192	96.95	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
KAG6586406.1	1.0e-189	96.67	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
XP_022937467.1	1.8e-189	96.97	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
KAG7021260.1	3.0e-189	96.66	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmaCh12G012230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	2.3e-78	46.67	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	1.7e-44	32.41	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	6.6e-25	26.91	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	1.2e-05	25.78	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	1.2e-05	25.78	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 76..102 e-value: 0.0031 score: 26.7 coord: 135..162 e-value: 4.1E-5 score: 33.0 coord: 218..245 e-value: 1.7E-7 score: 40.9
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 136..160 e-value: 1.3E-7 score: 31.3 coord: 77..101 e-value: 7.8E-5 score: 22.5 coord: 219..245 e-value: 7.6E-11 score: 41.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 218..246 score: 16.088787
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 76..103 score: 13.929295
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 135..163 score: 15.403383
None	No IPR available	GENE3D	4.10.1000.10		coord: 135..164 e-value: 2.5E-7 score: 32.0 coord: 214..250 e-value: 2.8E-15 score: 57.4 coord: 70..107 e-value: 2.8E-10 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..317
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 1..317
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 217..249
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 74..107
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 135..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G012230.1	CmaCh12G012230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding