CmaCh12G011400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G011400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	VQ domain-containing protein
Location	Cma_Chr12: 8979314 .. 8979691 (+)
RNA-Seq Expression	CmaCh12G011400
Synteny	CmaCh12G011400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGAGAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCCTTTTGTCCCTCGTCGTCTGCGACGACTTCTTTTGACTCAAAGGATTGTTATGGTTTGGTTTCTGGTGATGCTTACGATCTGATCGGGGTCGGTGAAATGAAAAATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATAG

mRNA sequence

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGAGAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCCTTTTGTCCCTCGTCGTCTGCGACGACTTCTTTTGACTCAAAGGATTGTTATGGTTTGGTTTCTGGTGATGCTTACGATCTGATCGGGGTCGGTGAAATGAAAAATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATAG

Coding sequence (CDS)

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGAGAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCCTTTTGTCCCTCGTCGTCTGCGACGACTTCTTTTGACTCAAAGGATTGTTATGGTTTGGTTTCTGGTGATGCTTACGATCTGATCGGGGTCGGTGAAATGAAAAATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATAG

Protein sequence

MENLRSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPSSSATTSFDSKDCYGLVSGDAYDLIGVGEMKNSLYGFQASYVDVWR

Homology

[Close]

BLAST of CmaCh12G011400 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 22  RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFN----HAF 81
           ++T  +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ +AD     SP  F     H  
Sbjct: 29  KSTTTHKPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD--LPPSPTTFTAVDLHRP 88

Query: 82  CPSSSATTSFDSKDCYGLVSGDAY-----DLIGVGEMKNSLYGFQAS 120
           C S       D     G V G+ Y     ++    +M   L GF +S
Sbjct: 89  CESEMNLEPLD-----GEVRGEYYSPLDEEVFNAPQMSAGLSGFFSS 127

[Close]

BLAST of CmaCh12G011400 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-04
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 22 RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPSS 81
          + T  NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ    DA D  P+     + PSS
Sbjct: 32 KTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQ----DAVDLQPEPI---YSPSS 83

[Close]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 116/125 (92.80%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MENLRSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
           MENL+SLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNE EFRAIVQKLTGQH
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQH 60

Query: 61  SADDAFDRSPQEFNHAFCPSSSATTSFDSKDCYGLVSGDAYDLIGVGEMKNSLYGFQASY 120
           SADDAFDRSPQEFNHAFCP SS  TSFDSKDCY LVS DAYD IGVGEMK+SLYGFQASY
Sbjct: 61  SADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDAYDPIGVGEMKDSLYGFQASY 120

Query: 121 VDVWR 126
           VDVWR
Sbjct: 121 VDVWR 125

[Close]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 82/145 (56.55%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 1   MENL-RSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSAD-DA-FDRSPQEFNHAFCP----SSSATTSFDSKDCYGLVSGDAY--DLI---- 120
           TGQHS D DA FD+S Q+FNHAF P    SS+   SFD +DCYG  SGD    D I    
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGD 120

Query: 121 ----GVGEMKNSLYGFQA-SYVDVW 125
                 GEM+ S  GFQA S V++W
Sbjct: 121 EGRYWRGEMEGSFSGFQASSCVNIW 145

[Close]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 80/141 (56.74%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 1   MENLRSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSADDAFDRSPQEFNHAFC---PSSSATTSFDSKDCYG-LVSGDA-YDLI--------G 120
           QHS D   D+S Q+FNH F    PSSS   SFD KDCYG   SGD  +D I         
Sbjct: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120

Query: 121 VGEMK-NSLYGFQA-SYVDVW 125
            GEM+  S  GFQA S V++W
Sbjct: 121 RGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 28  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDR----SPQEFNHAFCPSSSA 87
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+S DDAF+       +E NHAF P   +
Sbjct: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62

Query: 88  T-TSFDSKDCYGLVSGDAYDLIGVG----EMKNSLYGFQASYVDVW 125
           T  S D K  YGLVSG   +L G G    +      GFQAS V+ +
Sbjct: 63  TAVSTDPKGYYGLVSGKVGEL-GEGCFRQDEMQGFSGFQASCVNTY 107

[Close]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL
Match: A0A7N2L612 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MENLRSLPNHLRHEKLEASNYRAT--MANKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
          ME  +   NH  HE+ +  N   T  +  +P+K+KYISSPM+VKA N SEFRAIVQ+LTG
Sbjct: 1  MEMSKFANNHGLHEQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG 60

Query: 61 QHSAD 64
          QHS D
Sbjct: 61 QHSED 65

[Close]

BLAST of CmaCh12G011400 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 2.8e-58
Identity = 116/125 (92.80%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MENLRSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
           MENL+SLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNE EFRAIVQKLTGQH
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQH 60

Query: 61  SADDAFDRSPQEFNHAFCPSSSATTSFDSKDCYGLVSGDAYDLIGVGEMKNSLYGFQASY 120
           SADDAFDRSPQEFNHAFCP SS  TSFDSKDCY LVS DAYD IGVGEMK+SLYGFQASY
Sbjct: 61  SADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDAYDPIGVGEMKDSLYGFQASY 120

Query: 121 VDVWR 126
           VDVWR
Sbjct: 121 VDVWR 125

[Close]

BLAST of CmaCh12G011400 vs. NCBI nr
Match: KAG6586326.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.3 bits (586), Expect = 8.9e-57
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MENLRSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
           MENL+SLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQH
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKASNEFEFRAIVQKLTGQH 60

Query: 61  SADDAFDRSPQEFNHAFCPSSSATTSFDSKDCYGLVSGDAYDLIGVGEMKNSLYGFQASY 120
           SADDAFDRSPQEFNHAFCP SS  TSFDSKDCY LVS DAYD I VGEMK+SLYGFQASY
Sbjct: 61  SADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDAYDPIRVGEMKDSLYGFQASY 120

Query: 121 VDVWR 126
           VDVWR
Sbjct: 121 VDVWR 125

[Close]

BLAST of CmaCh12G011400 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 82/145 (56.55%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 1   MENL-RSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSAD-DA-FDRSPQEFNHAFCP----SSSATTSFDSKDCYGLVSGDAY--DLI---- 120
           TGQHS D DA FD+S Q+FNHAF P    SS+   SFD +DCYG  SGD    D I    
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGD 120

Query: 121 ----GVGEMKNSLYGFQA-SYVDVW 125
                 GEM+ S  GFQA S V++W
Sbjct: 121 EGRYWRGEMEGSFSGFQASSCVNIW 145

[Close]

BLAST of CmaCh12G011400 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 68/101 (67.33%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 27  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHAFC--PSSSAT 86
           NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS  DAFD+S ++FN  F   PSS A 
Sbjct: 4   NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPHDAFDQSAEDFNQVFYPPPSSMAA 63

Query: 87  TSFDSKDCYGLVSGDAYDLIGVGEMKNSLYGFQA-SYVDVW 125
            SFD KDCY   SGD       GEM+ S  GFQA S V+ W
Sbjct: 64  PSFDPKDCYASASGDVL-FDWQGEMEGSFSGFQASSCVNTW 103

[Close]

BLAST of CmaCh12G011400 vs. NCBI nr
Match: KAE8651551.1 (hypothetical protein Csa_019210 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 80/141 (56.74%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 1   MENLRSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSADDAFDRSPQEFNHAFC---PSSSATTSFDSKDCYG-LVSGDA-YDLI--------G 120
           QHS D   D+S Q+FNH F    PSSS   SFD KDCYG   SGD  +D I         
Sbjct: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120

Query: 121 VGEMK-NSLYGFQA-SYVDVW 125
            GEM+  S  GFQA S V++W
Sbjct: 121 RGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of CmaCh12G011400 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 22  RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFN----HAF 81
           ++T  +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ +AD     SP  F     H  
Sbjct: 29  KSTTTHKPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD--LPPSPTTFTAVDLHRP 88

Query: 82  CPSSSATTSFDSKDCYGLVSGDAY-----DLIGVGEMKNSLYGFQAS 120
           C S       D     G V G+ Y     ++    +M   L GF +S
Sbjct: 89  CESEMNLEPLD-----GEVRGEYYSPLDEEVFNAPQMSAGLSGFFSS 127

[Close]

BLAST of CmaCh12G011400 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 22 RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPSS 81
          + T  NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ    DA D  P+     + PSS
Sbjct: 32 KTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQ----DAVDLQPEPI---YSPSS 83

The following BLAST results are available for this feature:

BLAST of CmaCh12G011400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80669	1.4e-04	36.45	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LDH1	4.1e-04	48.33	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh12G011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJE0	1.3e-58	92.80	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A5A7VDH6	1.3e-24	56.55	VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LFF9	1.1e-23	56.74	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=...	[more]
A0A6J1CME4	1.8e-15	54.72	sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A7N2L612	2.4e-07	55.38	VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmaCh12G011400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938305.1	2.8e-58	92.80	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6586326.1	8.9e-57	91.20	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
KAA0063579.1	2.6e-24	56.55	VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-cont...	[more]
XP_038877668.1	1.3e-23	67.33	sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]	[more]
KAE8651551.1	2.2e-23	56.74	hypothetical protein Csa_019210 [Cucumis sativus]	[more]

BLAST of CmaCh12G011400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41180.1	1.0e-05	36.45	VQ motif-containing protein	[more]
AT3G56710.1	2.9e-05	48.33	sigma factor binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 35..63 e-value: 4.0E-9 score: 35.8
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 12..75
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 12..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011400.1	CmaCh12G011400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity