CmaCh12G011240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G011240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PSII 6.1 kDa protein
Location	Cma_Chr12: 8889438 .. 8890312 (-)
RNA-Seq Expression	CmaCh12G011240
Synteny	CmaCh12G011240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAACTACTTGGCACTCGGTGCTTTGGCCAATGGTAAGGAGATTACAATACACTATATAGAAACTACTTGGCACTTTACCATTGTCTTTAGATGGGAAAGCTCAACGATCCATTTATAGGAAATGCTACAACCCAACCCATTGTTCTTCTTTTAACGATGAACTACTCCGATACAACAAGTTAAAGGGACCTCTACGCTCCGTCTCCAGTGCGTAGGGCCGATCCCCATGTGCTATAGAGGGAAGACCGGAAAGTTTGTGTTAAGCAAAAAGAAAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTACAATGTGTTCGTATAATTTTTGGGTTTAAGTCTATTGAGCCAGTGATAATAGTTGTTATTCATTATCGAATAAAGAAAAAACACAGTTAGTAGAAGATCGAACTATCGACCATTGAAGGTGAAATTTTGCAGGATTATCGGTGGTGCAAAAGAGGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGTAAAGAGCTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTTATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCT

mRNA sequence

ATGGTAAACTACTTGGCACTCGGTGCTTTGGCCAATGGATTATCGGTGGTGCAAAAGAGGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGTAAAGAGCTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTTATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTAATGAAACGTTATTCCTCT

Coding sequence (CDS)

ATGGTAAACTACTTGGCACTCGGTGCTTTGGCCAATGGATTATCGGTGGTGCAAAAGAGGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCAAGAAGTAAAGAGCTCAAAAGAAAGCATGATTTCGGGGACGGTGGCGGCCGTGGCGACGACGGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MVNYLALGALANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

Homology

[Close]

BLAST of CmaCh12G011240 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 5   LALGALANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVAL 64
           +A+ A   GL  + K KKGG++C +E KQ   S   + +S    A  T V  M+ PA+AL
Sbjct: 24  VAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMGAGVSAAATAALTAV--MSNPAMAL 83

Query: 65  VDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           VDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Sbjct: 84  VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 13  GLSVVQKRKKGGIKCRLEEK----QEVKSSKESMISGTVAAVATTVVAMAGPAVALVDER 72
           GL  + KR K  + C +E K    +   ++ +SM +  +AA A   +  + PA+ALVDER
Sbjct: 33  GLPSMTKRSK--VTCSIENKPSTTETTTTTNKSMGASLLAAAAAATI--SNPAMALVDER 92

Query: 73  LSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           +STEGTGLPFGLSNNLLGWIL G+FG IWALYFVYAS LEEDE+SGLSL
Sbjct: 93  MSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of CmaCh12G011240 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-19
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 13  GLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTE 72
           GL  ++ R+   ++C   ++    ++       ++ A+A T    A PA+ALVDER+STE
Sbjct: 23  GLPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAAT----AAPAMALVDERMSTE 82

Query: 73  GTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSG 115
           GTGL  GLSNNLLGWIL G+FG IW+LY +Y S LEEDE+SG
Sbjct: 83  GTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of CmaCh12G011240 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 25  IKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL 84
           + C+    +   + K +M+S   A +A      A PA ALVDER++ +GTG PFG+++ +
Sbjct: 27  VVCKATTVRSEVAKKVAMLSTLPATLA------AHPAFALVDERMNGDGTGRPFGVNDPV 86

Query: 85  LGWILAGMFGFIWALYFVYASSLE--EDEDSGLSL 118
           LGW+L G+FG +WA++F+    L   ED D GL L
Sbjct: 87  LGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL
Match: A0A6J1HLU7 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ LSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS
Sbjct: 27  AHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ L VVQK KKGGIKC+LEEKQE K SKES+ISGTVAA+ATTVVAMAGPAVALVDERLS
Sbjct: 27  AHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.1e-36
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 13  GLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTE 72
           GL  +QK K G IKC++EEK E K S+ESM+ GTVAAVA   +A AGPAVALVDER+STE
Sbjct: 51  GLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTE 110

Query: 73  GTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           GTGLPFGLSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 111 GTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-35
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 14  LSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEG 73
           L  +QK K G IKC++EEK E K S+ESM+ GTVAAVA   +A AGPAVALVDER+STEG
Sbjct: 30  LPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEG 89

Query: 74  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TGLPFGLSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 90  TGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL
Match: A0A6J1CNY5 (PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 14  LSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTEG 73
           L +V K KKGGIKC++EE+ E KSS ES +S T+AAV   VVA AGPA ALVDERLSTEG
Sbjct: 30  LLMVPKMKKGGIKCKVEERPECKSSGESTVSVTMAAVVAAVVAAAGPAAALVDERLSTEG 89

Query: 74  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TGLPFGLSNNLL WILAG+F  IWALYFVYASSL+EDEDSGLSL
Sbjct: 90  TGLPFGLSNNLLAWILAGVFALIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. NCBI nr
Match: XP_022966002.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 4.6e-47
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ LSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS
Sbjct: 27  AHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ LSVVQK KKGGIKCRLEEKQE K SKESMISGTVAAVATTVVAMAGPAVALVDERLS
Sbjct: 27  AHRLSVVQKMKKGGIKCRLEEKQEGKRSKESMISGTVAAVATTVVAMAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-43
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ L VVQK KKGGIKC+LEEKQE K SKES+ISGTVAA+ATTVVAMAGPAVALVDERLS
Sbjct: 27  AHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 11  ANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLS 70
           A+ L ++QK KKGGIKCR+EEK E K S+ES++SGT+AAVA   +A AGPAVALVDERLS
Sbjct: 27  AHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLVSGTMAAVAMAALAAAGPAVALVDERLS 86

Query: 71  TEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           TEGTGLPFGLSNNLLGWILAG+F  IWALYFVYASSL+EDEDSGLSL
Sbjct: 87  TEGTGLPFGLSNNLLGWILAGVFALIWALYFVYASSLDEDEDSGLSL 133

[Close]

BLAST of CmaCh12G011240 vs. NCBI nr
Match: XP_016902308.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 13  GLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVALVDERLSTE 72
           GL  +QK K G IKC++EEK E K S+ESM+ GTVAAVA   +A AGPAVALVDER+STE
Sbjct: 51  GLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTE 110

Query: 73  GTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           GTGLPFGLSNNLLGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Sbjct: 111 GTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of CmaCh12G011240 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-27
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 5   LALGALANGLSVVQKRKKGGIKCRLEEKQEVKSSKESMISGTVAAVATTVVAMAGPAVAL 64
           +A+ A   GL  + K KKGG++C +E KQ   S   + +S    A  T V  M+ PA+AL
Sbjct: 24  VAISAPVLGLPPMGK-KKGGVRCSMETKQGNVSVMGAGVSAAATAALTAV--MSNPAMAL 83

Query: 65  VDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL 118
           VDER+STEGTGLPFGLSNNLLGWIL G+FG IW  +FVY SSLEEDE+SGLSL
Sbjct: 84  VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of CmaCh12G011240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	2.7e-26	59.29	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	2.5e-24	58.72	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	4.2e-19	49.02	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.6e-10	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of CmaCh12G011240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLU7	2.2e-47	98.13	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1	[more]
A0A6J1FBR0	1.1e-43	91.59	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A1S4E257	5.1e-36	79.05	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A1S3C2B0	2.6e-35	78.85	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A6J1CNY5	1.8e-33	76.92	PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1	[more]

BLAST of CmaCh12G011240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966002.1	4.6e-47	98.13	photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_023521133.1	5.6e-45	95.33	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022937622.1	2.4e-43	91.59	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]
XP_038890119.1	1.6e-36	78.50	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_016902308.1	1.1e-35	79.05	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]

BLAST of CmaCh12G011240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	1.9e-27	59.29	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 13..117 e-value: 3.3E-42 score: 143.6
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 13..117
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 13..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011240.1	CmaCh12G011240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast