CmaCh12G010590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G010590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr12: 8368070 .. 8370382 (-)
RNA-Seq Expression	CmaCh12G010590
Synteny	CmaCh12G010590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTCATCCGGCCCAAGATTCGGCCCTTATAAAGCCCAAGATTCTCCTCAACACATGGCTGCACCAGCTGAAGTAAGTTGGATGTTCTTCGCGTAATTTCCTATTACTTTTTTGTTCTTGCTGTTTTTCTATAATGAATTTCTATAAACGAACGGAATTTTCTTTATGTAGGTAATAATAGTTTGAATTAAGTTTTGTTCGTTAGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTGTAAGTGCTTGAATTAGTGTTTGTCCAGTGCTATACGATTTAACTCGTTACTCGATGAACTATTCAACGAATAGAAATGGAGAATTTACGACTGTTTTTTCAACAACGTGTTGTCGAGATGTTTCATAAGAAGAAAAAATAAAAAGAAGAAGCATGTTCTTCGAACTTGTAAAAAATAGAAAGGTGCATCTCATGATAATCACATATTTTCGACCTCTTGAGACGTACAGAGTGATGAAAATTCTAGTTCAGGAATGAGTGAGTCATGCTGTTTTAGGAACCTTGTTTGTTGAACTGAAAGTATCAATTGGAGTACTTTGATATCTTGATCACATTAGAATAGATTTTGTGAGTACATTCAAATGCTGAATGTGAAGTTCGGCACTAATTCTTGAAATTCTTGGCAAGTTCTCAATTTATTTGAACTGACTTTCATTTATTTCCTCTCGACTTGCATAAGCTTTATTGAAATGGACATTCACTATATAAGTGTATTACGGTTTTTTTAAAAATTAATTTCGAGGCATAATCGATTTTGAATGTTTAAGAAACGATTGTGCATTCGTTCTGAGATAGTTTTTGACTTCCATCTTATAGAAGAAGTTTTCTGCTTCACGCAAGCATGTCATATGGTTACTTACCTAAAATCTCCTCATTCAATTATTTCTGCTTTCAGTTTGTTCCGGCTGTCAGAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAAAGAACCAATATATCTTTATATAAACTCCACAGGAACAACTCGAGATGATGACGAAACTGTAAGCTTTTAATTTATTCAGCTACCTGAAACAAGTGAAATTAAGTTGTAAAGGGCATGCATTTCTTTCCTCATGCTTTACAATATCATCTGCCTACATTTTTTAGGTTTTGTATTCAGACTATAAATCTGGCTCGTTTATCTACGCGTTGACATGAACATCAACTTGTTTGTCATGATCAGGAGTTCCTTTGTTTGAGATCTTACAGGACTCATTTTTTAATTTGTTCATCATTAATAATTAAGAAAAACAATTAAAATGAGATTGTAATTTTTAGATTTTTTCTTCCAAAAGTATGTTTAATTGTAATTGCTAAGAGCAGCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGATGCTGCTCGTGACGTTCTTATTCGTGCAAAAGAGGTCAAGATCCTCCTATAGCCTTGTAATTTATTTTAAAGTAGAACTCAGTTTATTTGACTCTGATTTTTGCTGGATCACTTAGCCCTTCGATTCAAGAGGTGAAAAAGGGAATTCTATTCAAAATCTCAATCATTTCCTAAAATTTTCAATGATTATTATTGGGGGGGAAAGTTTTTCATCCACTCAGCATCTTTTTTAAAGAATACAAGTGGATCTTTGTATATTTCAGCTCTTTTTTCCTGTCTAACAAAGCGAAGCACGTTGGAAATGTAAGCCTAGGTTATCAGAAACCACACACCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGTTCTCATGACTTTGCTTTTGGTTTCCCCAAAAGACCTCATACCAATGGAGATTTATTCCTTATAGACCCATGATCATCCTCTTAATTAGCCAATGTGGAATTCCCTCCTAGCCATCCTCAACATAGGCAACATTTATTTCTACTCTTTTTTTGAACTCACATGTCCGGACGTACCATATAATTCATAATACAACTTCAATATTTTGTTAGTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGGTAACCTAACGCACAGATTTCTTCAGGGTATAACACGATGCACATGCTTTGTTGCTTATAATTGTAGTATATAATTCTAATTTGGCAAGTTGGCACCAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

mRNA sequence

CCATTTCATCCGGCCCAAGATTCGGCCCTTATAAAGCCCAAGATTCTCCTCAACACATGGCTGCACCAGCTGAAGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTTTTGTTCCGGCTGAACAACTCGAGATGATGACGAAACTTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

Coding sequence (CDS)

ATGGCTGCACCAGCTGAAGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTTTTGTTCCGGCTGAACAACTCGAGATGATGACGAAACTTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

Protein sequence

MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNCDEKTIVRGCTSREREFGVIDKILWRGQETIMADVAAPKE

Homology

[Close]

BLAST of CmaCh12G010590 vs. ExPASy Swiss-Prot
Match: Q8L770 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

HSP 2 Score: 43.1 bits (100), Expect = 2.0e-03
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVID+ILWRGQE I+ADV   +E
Sbjct: 292 KAKEFGVIDRILWRGQEKIIADVVPSEE 319

[Close]

BLAST of CmaCh12G010590 vs. ExPASy Swiss-Prot
Match: Q9L4P4 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpR PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.9e-04
Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 13 YSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNCDEKTIVR 63
          Y + + R PPP+LPSLLL  RIIY+GMP   ++ ++     +  E  I +
Sbjct: 13 YGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQ 62

[Close]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL
Match: A0A6J1KFX9 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111493541 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.4e-13
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL
Match: A0A6J1G379 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111450387 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.4e-13
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL
Match: A0A6J1G379 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111450387 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-02
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVIDKILWRGQE IMA+VA+P++
Sbjct: 290 KAKEFGVIDKILWRGQEKIMAEVASPED 317

HSP 2 Score: 82.8 bits (203), Expect = 8.4e-13
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERS+SY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSISYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL
Match: A0A0A0LLW4 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_2G031150 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-02
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVIDKILWRGQE IMAD+A+P++
Sbjct: 291 KAKEFGVIDKILWRGQEKIMADMASPED 318

HSP 2 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNC 56
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA    ++ +L C
Sbjct: 90  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMC 144

[Close]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL
Match: A0A1S3BXZ3 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103494643 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-12
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 98  MAAPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPA 141

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: KAG7021082.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
          MAAPA+VERSVSY+EHTSRRPPPELPSLLLHGRIIYIGMPFVPA
Sbjct: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 44

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: KAG6586246.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
          MAAPA+VERSVSY+EHTSRRPPPELPSLLLHGRIIYIGMPFVPA
Sbjct: 1  MAAPAQVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 44

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: XP_028068125.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic isoform X2 [Camellia sinensis])

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 61/181 (33.70%), Postives = 76/181 (41.99%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMP-------------------- 60
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP                    
Sbjct: 89  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPVGMESEGFAIYDAMMQLKNE 148

Query: 61  --------------------------------------------FVPAEQLEMMTK---L 95
                                                        +PA  + +  K   +
Sbjct: 149 IHTVAVGAAIGHACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVII 208

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: KAG7030236.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: KAG6599231.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. TAIR 10
Match: AT1G09130.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

HSP 2 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVID+ILWRGQE I+ADV   +E
Sbjct: 292 KAKEFGVIDRILWRGQEKIIADVVPSEE 319

[Close]

BLAST of CmaCh12G010590 vs. TAIR 10
Match: AT1G09130.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

HSP 2 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVID+ILWRGQE I+ADV   +E
Sbjct: 292 KAKEFGVIDRILWRGQEKIIADVVPSEE 319

[Close]

BLAST of CmaCh12G010590 vs. TAIR 10
Match: AT1G09130.3 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

HSP 2 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 67  REREFGVIDKILWRGQETIMADVAAPKE 95
           + +EFGVID+ILWRGQE I+ADV   +E
Sbjct: 292 KAKEFGVIDRILWRGQEKIIADVVPSEE 319

[Close]

BLAST of CmaCh12G010590 vs. TAIR 10
Match: AT1G49970.1 (CLP protease proteolytic subunit 1 )

HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 0


Query: 19  RRPPPELPSLLLHGRIIYIGMPFVPA 45
           R  PP+LPSLLL  RI Y+GMP VPA
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPA 191

The following BLAST results are available for this feature:

BLAST of CmaCh12G010590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L770	6.8e-12	70.45	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
Q9L4P4	8.9e-04	40.00	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]

BLAST of CmaCh12G010590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFX9	6.4e-13	86.36	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1G379	6.4e-13	86.36	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1G379	1.8e-02	71.43	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0LLW4	1.3e-02	71.43	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3BXZ3	2.4e-12	84.09	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of CmaCh12G010590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021082.1	1.8e-14	95.45	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic,...	[more]
KAG6586246.1	1.8e-14	95.45	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic,...	[more]
XP_028068125.1	7.8e-13	33.70	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
KAG7030236.1	1.3e-12	86.36	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
KAG6599231.1	1.3e-12	86.36	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic,...	[more]

BLAST of CmaCh12G010590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09130.1	4.9e-13	70.45	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.2	4.9e-13	70.45	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.3	4.9e-13	70.45	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G49970.1	5.4e-04	69.23	CLP protease proteolytic subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 68..93
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 1..44
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 68..93
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G010590.1	CmaCh12G010590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity