CmaCh12G010330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G010330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Peptide chain release factor
Location	Cma_Chr12: 8204213 .. 8206637 (-)
RNA-Seq Expression	CmaCh12G010330
Synteny	CmaCh12G010330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACCTTTTGTGGAAGATAGAAACACTCGTCGAAATTATTCTCTGGCGGTAGCCCTCAGAATTTAATCAACGAGCAGGTGGAAGGATTTCTATGATTCTTGAAATCACATTCAAAATTACCTATTTTACTTCAATTGTTTATAGTATTTCTTTGAGATTTGGTCTCATCTCTTATCTTCTGTGTTTGTTTCAATCGAAAAGTTCGTTTCCGCGGAGAAAATCTTGCGTTTTCGAAGCATTTGAAATCGCGTGGATTCTTGATTATATCTGCTTTTTTCTGTGTAGAAAACATCTTAGCATAAAATTTGCAGTCGTGAAGAATTTGGTTTGTTCTGAATTTTTGCTGTTTTGTTCGTAGGTTGTTGCGATTTTGAAGTGAGGAGAAAATATTTAAGAGAAAGGGAGACAGCGGAATCGAGGAGATTCATGAGTTCGTCTTCAGTTATAACTCCAGAAGATGTGTTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTTAGGTTGAAGATCATCAACCAGCTCAAAGCCAATGTCAGTCTCGCTTCCTCCATAATTATGTTTTAATTTCTTTGGGTTTCAAATTGACATCATTGAACTGATTCAACTATGTAATCTTTAGCTCACAATTAAACACATTTGGGATGCTTGTTTTGAGATTTTGATAAGCCTAAGATTATCAAGTTTGGGTGAAATAAGTTGTAGAAACTGATGGAGAAGGCCTAGATAGTTGGTCGCATTAACAAACTTGTAATCTTGGTAACTCACATACCAAACATTGGTTTAAGTTATTGAGGAACTTGGAGCTATGTCAACTGAATCATTCTCTCTAGTGTTCTTAGGAAGTAAAGTTATACATTATCTCATTGGGGTGTCAATAGCTGATAGAATCTACACACTTATATTGTGAATTCATGGCTTTTCTGTTTGTAAGAAAAATTGTATGTTTTCTTGAGATTTCTTTTGTTCTATTAGTTTATCTAGCAGTTGTTTGAATTTGGATTTCATAATGTGATGGAATGGTCTTTGAGCCGTTGTTTTCGGGCTGCGCATTTGGCGAGTCTCTCTAATGTGTATTTTCCTTGTTGTAGGAGGAGCTTAAGAATACCACCATTAAAATGGTAGAACAGAGCAAAGTCCTCAACACCCCTGGGGCAGAGAAACAGACCAAAAGAGAGTTATTTGATGCTCTTCGACAGGAGCTCGAGTCAGTATTATCTCTACTTTATTGTTTAAATGTCTCCTCTCTTCTTTATACACGTTTTCGTGAGATGAACTGAACACGAGCAGGCACTTAAAACTTCATCACAGCATGTAATTTAAATTTGTTGAAAGGATTGCACACTTGGTTTTTAGTTTTCCATCTTGTGAGGTCTGTGGTTGAAGCATATTCAAGTTACTACAAATAAAATATTTGAATAAGCATGAGTCCCGAAGAGAGTTGTTTGTTTCCATCAGGAACAAAAACTTTGTTAACAATAAATTCTTGCAAAATAATTGAAGAGAATACAACATCCACAAGCTTTAAAAAAAGCAGATTATGTATCCTCGTATGTGTTGACGGTTTCAGAATGTCGTACCACGTCTGGAATGTTCATGATGATTGTCTGTTTAAGAGAATTCCTCTATTTCTCTCTCTCCCCATTTTCTCTTTTTCCTTACTAAATTGTGCATCTAAGCGAACAAAAGTCTTCATACATGTTTAGGTTTCTGATAATTTTACCACTCTTGGATGTTATGCAGAGCACCCGTGCTTGAGAAAGCCTCTAAATCTGTTTGGGAATTGATCCTGGACAACAGTGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTGAAAACGGGGATATCCCATCGGTCAAAGAAACTGAGAACGATAAAGGGAAGGAAAAAGAACCTGAAGATGATTATCACAAGGAGAAATCACAACCTCTTAGGAAAAGGAGTTTCATTGACATGAATGGCAAAGACGAAAACAATGTCGTAGATGGAGCTGGAGAAAATCTAGCTGCAACTGAGGAACATAGTAGGTCACCTTAGTTGAGTTTGAAGACAAAAACAAGTCATGAACCATGCTAGGATGGCAGGTCTTGCAGGTCTGTGATCATTAGTTCGAGTTTTTCGTACTTAATCTGCTGAGTATGGCCTGTCAAACACAAATGAAATCCGACACTATGCACGCTGCACACGCAATTGATGGGAGTCCAAAATTATGTTTGTGTGGATGTATATGAACACTTCCATGATCTTTAATGCTCTGGTTAGGAAATAGGACAGTTAGTGGTTAAAAAACTAGCTTTTGTAGCCTAATCAATCCATGTCAATGCTATGAAAAACAATACAAATATTGATTGGCGTTTTTGTGCAGTATTCAGTAG

mRNA sequence

AGAACCTTTTGTGGAAGATAGAAACACTCGTCGAAATTATTCTCTGGCGGTAGCCCTCAGAATTTAATCAACGAGCAGGTTGTTGCGATTTTGAAGTGAGGAGAAAATATTTAAGAGAAAGGGAGACAGCGGAATCGAGGAGATTCATGAGTTCGTCTTCAGTTATAACTCCAGAAGATGTGTTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTTAGGTTGAAGATCATCAACCAGCTCAAAGCCAATGAGGAGCTTAAGAATACCACCATTAAAATGGTAGAACAGAGCAAAGTCCTCAACACCCCTGGGGCAGAGAAACAGACCAAAAGAGAGTTATTTGATGCTCTTCGACAGGAGCTCGAAGCACCCGTGCTTGAGAAAGCCTCTAAATCTGTTTGGGAATTGATCCTGGACAACAGTGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTGAAAACGGGGATATCCCATCGGTCAAAGAAACTGAGAACGATAAAGGGAAGGAAAAAGAACCTGAAGATGATTATCACAAGGAGAAATCACAACCTCTTAGGAAAAGGAGTTTCATTGACATGAATGGCAAAGACGAAAACAATGTCGTAGATGGAGCTGGAGAAAATCTAGCTGCAACTGAGGAACATAGTAGGTCACCTTAGTTGAGTTTGAAGACAAAAACAAGTCATGAACCATGCTAGGATGGCAGGTCTTGCAGGTCTGTGATCATTAGTTCGAGTTTTTCGTACTTAATCTGCTGAGTATGGCCTGTCAAACACAAATGAAATCCGACACTATGCACGCTGCACACGCAATTGATGGGAGTCCAAAATTATGTTTGTGTGGATGTATATGAACACTTCCATGATCTTTAATGCTCTGGTTAGGAAATAGGACAGTTAGTGGTTAAAAAACTAGCTTTTGTAGCCTAATCAATCCATGTCAATGCTATGAAAAACAATACAAATATTGATTGGCGTTTTTGTGCAGTATTCAGTAG

Coding sequence (CDS)

ATGAGTTCGTCTTCAGTTATAACTCCAGAAGATGTGTTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTTAGGTTGAAGATCATCAACCAGCTCAAAGCCAATGAGGAGCTTAAGAATACCACCATTAAAATGGTAGAACAGAGCAAAGTCCTCAACACCCCTGGGGCAGAGAAACAGACCAAAAGAGAGTTATTTGATGCTCTTCGACAGGAGCTCGAAGCACCCGTGCTTGAGAAAGCCTCTAAATCTGTTTGGGAATTGATCCTGGACAACAGTGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTGAAAACGGGGATATCCCATCGGTCAAAGAAACTGAGAACGATAAAGGGAAGGAAAAAGAACCTGAAGATGATTATCACAAGGAGAAATCACAACCTCTTAGGAAAAGGAGTTTCATTGACATGAATGGCAAAGACGAAAACAATGTCGTAGATGGAGCTGGAGAAAATCTAGCTGCAACTGAGGAACATAGTAGGTCACCTTAG

Protein sequence

MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFPPENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAATEEHSRSP

Homology

[Close]

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL
Match: A0A6J1HSD3 (uncharacterized protein LOC111465686 OS=Cucurbita maxima OX=3661 GN=LOC111465686 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA
Sbjct: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 TEEHSRSP 189
           TEEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL
Match: A0A6J1FDE9 (uncharacterized protein LOC111444361 OS=Cucurbita moschata OX=3662 GN=LOC111444361 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           PENGDIPSVKETENDKGK KEPEDDYHKEKSQP+RKRSFIDMNGKDENNVVDGAGENLAA
Sbjct: 121 PENGDIPSVKETENDKGKGKEPEDDYHKEKSQPVRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 TEEHSRSP 189
           TEEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL
Match: A0A0A0LGM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033970 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86
Identity = 170/188 (90.43%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN+GLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           P+NGD+P VKETE++KGK KEPED+YHKEKSQPLRKRSF DMNGK+E+ + DGAGE+LA 
Sbjct: 121 PQNGDMPPVKETEHEKGKGKEPEDNYHKEKSQPLRKRSFNDMNGKEESTIADGAGESLAV 180

Query: 181 TEEHSRSP 189
            EEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL
Match: A0A1S3BWQ6 (uncharacterized protein LOC103494285 OS=Cucumis melo OX=3656 GN=LOC103494285 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.7e-86
Identity = 171/188 (90.96%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN+GLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           P+NGD+P VKETE +KGK KEPED+YHKEKSQP+RKRSF DMNGK+EN V DGAGE+LA 
Sbjct: 121 PQNGDMPPVKETELEKGKGKEPEDNYHKEKSQPVRKRSFNDMNGKEENAVADGAGESLAV 180

Query: 181 TEEHSRSP 189
            EEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL
Match: A0A5D3BAZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001180 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.7e-86
Identity = 171/188 (90.96%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN+GLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           P+NGD+P VKETE +KGK KEPED+YHKEKSQP+RKRSF DMNGK+EN V DGAGE+LA 
Sbjct: 121 PQNGDMPPVKETELEKGKGKEPEDNYHKEKSQPVRKRSFNDMNGKEENAVADGAGESLAV 180

Query: 181 TEEHSRSP 189
            EEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. NCBI nr
Match: XP_022965964.1 (uncharacterized protein LOC111465686 [Cucurbita maxima])

HSP 1 Score: 360.9 bits (925), Expect = 6.6e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA
Sbjct: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 TEEHSRSP 189
           TEEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. NCBI nr
Match: XP_023536782.1 (uncharacterized protein LOC111798060 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           PENGDIPSVKETENDKGK KEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA
Sbjct: 121 PENGDIPSVKETENDKGKGKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 TEEHSRSP 189
           TEEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. NCBI nr
Match: XP_022938214.1 (uncharacterized protein LOC111444361 [Cucurbita moschata] >KAG6586223.1 hypothetical protein SDJN03_18956, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 2.8e-94
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           PENGDIPSVKETENDKGK KEPEDDYHKEKSQP+RKRSFIDMNGKDENNVVDGAGENLAA
Sbjct: 121 PENGDIPSVKETENDKGKGKEPEDDYHKEKSQPVRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 TEEHSRSP 189
           TEEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. NCBI nr
Match: KAG7021055.1 (hypothetical protein SDJN02_17743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-92
Identity = 185/194 (95.36%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKAN------EELKNTTIKMVEQSKVLN 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKAN      EELKNTTIKMVEQSKVLN
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANVSLASSEELKNTTIKMVEQSKVLN 60

Query: 61  TPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGK 120
           TPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGK
Sbjct: 61  TPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGK 120

Query: 121 EPPLFPPENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGA 180
           EPPLFPPENGDIPSVKETENDKGK KEPEDDYHKEKSQP+RKRSFIDMNGKDENNVVDGA
Sbjct: 121 EPPLFPPENGDIPSVKETENDKGKGKEPEDDYHKEKSQPVRKRSFIDMNGKDENNVVDGA 180

Query: 181 GENLAATEEHSRSP 189
           GENLAATEEHSRSP
Sbjct: 181 GENLAATEEHSRSP 194

[Close]

BLAST of CmaCh12G010330 vs. NCBI nr
Match: XP_038890481.1 (uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_038890483.1 uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_038890484.1 uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida])

HSP 1 Score: 332.0 bits (850), Expect = 3.3e-87
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           M SSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MGSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN+GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVVDGAGENLAA 180
           P+NGD+PSVKETEN+KGK KEPED+YHKEKS P+RKRSF DMNGK+EN V DGAGE+LA 
Sbjct: 121 PQNGDMPSVKETENEKGKGKEPEDNYHKEKSHPIRKRSFNDMNGKEENIVADGAGESLAV 180

Query: 181 TEEHSRSP 189
            EEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of CmaCh12G010330 vs. TAIR 10
Match: AT1G56420.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 118/192 (61.46%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVI PEDVLE LMNDGTID+LRL+IINQLKANEELK+TTIKM E+SKVLNTPGAEK
Sbjct: 1   MSSSSVIKPEDVLEHLMNDGTIDALRLRIINQLKANEELKSTTIKMAEESKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELE PVLEKASKSVW+LI++  GLGKEIN+TVE+VFC LSG+EPP + 
Sbjct: 61  QTKRELFDALRQELEGPVLEKASKSVWDLIIEKDGLGKEINETVERVFCHLSGQEPPFYS 120

Query: 121 PENGDIPSVKETENDKGKEKEPEDDYHKEKSQPLRKRSFIDMNGKDENNVV----DGAGE 180
             N     V++T  +  KE E +D     K++P +KRS  ++N  +  + V       G+
Sbjct: 121 SSN-----VEKTPMEIDKETEVKD---SSKTKP-KKRSLSEVNSSEGIDEVATTKKKQGD 180

Query: 181 NLAATEEHSRSP 189
           +   T E  ++P
Sbjct: 181 SSTVTLESRKTP 183

[Close]

BLAST of CmaCh12G010330 vs. TAIR 10
Match: AT1G12530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           M  +  I+ E+V+E L +DG  D LRLKII +LK NE+L+N  I +V++S  L   GA+ 
Sbjct: 2   MGMARKISKEEVVEKLKDDGDFDRLRLKIIRRLKENEDLRNNMISVVKESTSLKRHGAQN 61

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNSGLGKEINDTVEKVFCRLSGKEPPLFP 120
              R+L DA+ +E+ + +L + S  +W +I    G+  EI +TV+ V+  LS       P
Sbjct: 62  MKTRQLSDAIFEEVGSKMLSQLSDGLWGIIRSEDGMKNEIRETVQSVYATLSN------P 121

Query: 121 PENGDIPSVKETEND-KGKEKEPEDDYH----KEKSQPLRKRSFIDMNGKD-ENNVVDGA 180
                  S +E E+     +KE   D++     ++ Q L K +  D  G+   ++V D  
Sbjct: 122 RGEKRGTSAREMEHKIPTPKKEARTDFNTSPASKQKQELIKGAVEDNKGEACSDDVQDNK 181

Query: 181 GENLAATEEHSRSP 189
           GE     EE    P
Sbjct: 182 GEAYNDDEEDPELP 189

The following BLAST results are available for this feature:

BLAST of CmaCh12G010330 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G010330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSD3	3.2e-96	100.00	uncharacterized protein LOC111465686 OS=Cucurbita maxima OX=3661 GN=LOC111465686...	[more]
A0A6J1FDE9	1.3e-94	98.40	uncharacterized protein LOC111444361 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A0A0LGM0	3.9e-86	90.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033970 PE=4 SV=1	[more]
A0A1S3BWQ6	8.7e-86	90.96	uncharacterized protein LOC103494285 OS=Cucumis melo OX=3656 GN=LOC103494285 PE=...	[more]
A0A5D3BAZ9	8.7e-86	90.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh12G010330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965964.1	6.6e-96	100.00	uncharacterized protein LOC111465686 [Cucurbita maxima]	[more]
XP_023536782.1	1.2e-94	98.94	uncharacterized protein LOC111798060 [Cucurbita pepo subsp. pepo]	[more]
XP_022938214.1	2.8e-94	98.40	uncharacterized protein LOC111444361 [Cucurbita moschata] >KAG6586223.1 hypothet...	[more]
KAG7021055.1	2.6e-92	95.36	hypothetical protein SDJN02_17743, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038890481.1	3.3e-87	91.49	uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_03889048...	[more]

BLAST of CmaCh12G010330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56420.1	1.4e-51	61.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G12530.1	1.0e-14	32.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..163
None	No IPR available	PANTHER	PTHR34356:SF1	ANTIGENIC HEAT-STABLE PROTEIN	coord: 1..183
None	No IPR available	PANTHER	PTHR34356	ANTIGENIC HEAT-STABLE PROTEIN	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G010330.1	CmaCh12G010330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016149	translation release factor activity, codon specific