CmaCh12G010040 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G010040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 8022645 .. 8023478 (+)
RNA-Seq ExpressionCmaCh12G010040
SyntenyCmaCh12G010040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTGCTACTGCCTATGGTTATTCTTTCATTGAAATGCTCTGAGACTCTCTCTCTCTCTCTATATATATATATGTGTGTGTGCGCGCGTGCTGCAGCCTATGATTCTTCTTTCATTGAAATGCTCTGTGACTCTCTTTTTATCTCTCTATGTATATACATACTTAGGATCAATTGATGTTTAAACCCTGGCTTGAATTGGGATTGCCCTCCTTGAGAAATTGATGTTTAAACATAGTAATAGCACACGAACGAGAAGAAAACAACAGCCTAGTAACCTAGAATTGAAGAGGATTGTCCAATTAAAGCGATGAAACATTGGCAGATTATGAACTGAAACATGAAACAAAATCTACCTTGTTGTGCATAAGAATGGCACATCCAGGCTCCAACTGGTCTTTATCGACAAATGACAAGATCCCCACATAGTACTCCGGACCAACAGACGACGACACAATCGCATGATTCCCGACACTCATCGGCGAGCCACGAAGGTCATCGACATTAGATCTATCTTCTTCATTCTTCTCTTCCTGAGGCTTAGTCGCTCTTGATTGGCAACGAACTCTTCCTCCATGAGCAAATGGTCCTTGACTCGCTCGAGCTTCAGAAGCCGGAGCTTGCACTTGGTGTGAGGGGTGACCGTCGGGAGGCGGTCGGCGGCGTCGGGATCCTTCTGTTTTCTCTGCTTGCGGCCGACGCGCGACAGAGGCGCCGCTGGCTCAAATTTCTTGTCCTTGTTGGGGTCATCGTGCTTCCGGTCACCGCGAAAACCCTCTTGGTGGTTGGTTCCGCCGGGATTGCCCTGACCCATTTTTGGTTAAGAGAGTGA

mRNA sequence

ATGTATGTGCTACTGCCTATGTCGCTCTTGATTGGCAACGAACTCTTCCTCCATGAGCAAATGGTCCTTGACTCGCTCGAGCTTCAGAAGCCGGAGCTTGCACTTGGTGTGAGGGGTGACCGTCGGGAGGCGGTCGGCGGCGTCGGGATCCTTCTGTTTTCTCTGCTTGCGGCCGACGCGCGACAGAGGCGCCGCTGGCTCAAATTTCTTGTCCTTGTTGGGGTCATCGTGCTTCCGGTCACCGCGAAAACCCTCTTGGTGGTTGGTTCCGCCGGGATTGCCCTGACCCATTTTTGGTTAAGAGAGTGA

Coding sequence (CDS)

ATGTATGTGCTACTGCCTATGTCGCTCTTGATTGGCAACGAACTCTTCCTCCATGAGCAAATGGTCCTTGACTCGCTCGAGCTTCAGAAGCCGGAGCTTGCACTTGGTGTGAGGGGTGACCGTCGGGAGGCGGTCGGCGGCGTCGGGATCCTTCTGTTTTCTCTGCTTGCGGCCGACGCGCGACAGAGGCGCCGCTGGCTCAAATTTCTTGTCCTTGTTGGGGTCATCGTGCTTCCGGTCACCGCGAAAACCCTCTTGGTGGTTGGTTCCGCCGGGATTGCCCTGACCCATTTTTGGTTAAGAGAGTGA

Protein sequence

MYVLLPMSLLIGNELFLHEQMVLDSLELQKPELALGVRGDRREAVGGVGILLFSLLAADARQRRRWLKFLVLVGVIVLPVTAKTLLVVGSAGIALTHFWLRE
Homology
[Close]
BLAST of CmaCh12G010040 vs. ExPASy TrEMBL
Match: A0A0P0XAK2 (Os07g0692001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0692001 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 8   SLLIGNELFLHEQMVLDSLELQKPELALGVRGDRREAVGGVGILLFSLLAADARQRRRWL 67
           +LL G+EL LHE++VLD LEL++ E ALG RGD  EA G +G LL +LLAADA      L
Sbjct: 37  ALLGGDELLLHEEVVLDPLELEEAEAALGERGDVGEASGRLGALLLALLAADAGGGGGGL 96

Query: 68  KFLVLVGVIVLPVTAKTLLVVGSAGI 94
           +  VL     L   A  L V G A +
Sbjct: 97  ELAVL-----LVAVAARLAVAGGAAL 117

[Close]
BLAST of CmaCh12G010040 vs. ExPASy TrEMBL
Match: A0A371FQM3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38834 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 8   SLLIGNELFLHEQMVLDSLELQKPELALGVRGDRREAVGGVGILLFSLLAADARQRRRWL 67
           +LLI +E  LH+Q+VLDSL+LQ+P+LAL  R  RR+    +  LL  L    A +R R L
Sbjct: 108 ALLIRHEFLLHQQVVLDSLQLQQPQLALRHRSHRRQPRRRIRTLLLPLFPPHACRRSRRL 167

Query: 68  KFLVLVGVIVLPVTAKTLLVVGSAGIALTH 98
           + L+L   +V  V     L V SA  +LTH
Sbjct: 168 ELLLL---LVAAVRLAIALPVHSARSSLTH 194

[Close]
BLAST of CmaCh12G010040 vs. NCBI nr
Match: KAB8106984.1 (hypothetical protein EE612_041534, partial [Oryza sativa] >BAT03343.1 Os07g0692001, partial [Oryza sativa Japonica Group])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 8   SLLIGNELFLHEQMVLDSLELQKPELALGVRGDRREAVGGVGILLFSLLAADARQRRRWL 67
           +LL G+EL LHE++VLD LEL++ E ALG RGD  EA G +G LL +LLAADA      L
Sbjct: 37  ALLGGDELLLHEEVVLDPLELEEAEAALGERGDVGEASGRLGALLLALLAADAGGGGGGL 96

Query: 68  KFLVLVGVIVLPVTAKTLLVVGSAGI 94
           +  VL     L   A  L V G A +
Sbjct: 97  ELAVL-----LVAVAARLAVAGGAAL 117

[Close]
BLAST of CmaCh12G010040 vs. NCBI nr
Match: RDX80586.1 (hypothetical protein CR513_38834, partial [Mucuna pruriens])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 8   SLLIGNELFLHEQMVLDSLELQKPELALGVRGDRREAVGGVGILLFSLLAADARQRRRWL 67
           +LLI +E  LH+Q+VLDSL+LQ+P+LAL  R  RR+    +  LL  L    A +R R L
Sbjct: 108 ALLIRHEFLLHQQVVLDSLQLQQPQLALRHRSHRRQPRRRIRTLLLPLFPPHACRRSRRL 167

Query: 68  KFLVLVGVIVLPVTAKTLLVVGSAGIALTH 98
           + L+L   +V  V     L V SA  +LTH
Sbjct: 168 ELLLL---LVAAVRLAIALPVHSARSSLTH 194

The following BLAST results are available for this feature:
BLAST of CmaCh12G010040 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G010040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0XAK21.7e-0648.84Os07g0692001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07... [more]
A0A371FQM32.0e-0443.33Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38834 P... [more]
BLAST of CmaCh12G010040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8106984.13.4e-0648.84hypothetical protein EE612_041534, partial [Oryza sativa] >BAT03343.1 Os07g06920... [more]
RDX80586.14.2e-0443.33hypothetical protein CR513_38834, partial [Mucuna pruriens][more]
BLAST of CmaCh12G010040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G010040.1CmaCh12G010040.1mRNA