CmaCh12G009770 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGGTAGGAGATTTTTCAACCGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTTATGCTTCTATAGAGCTTTGTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTGAAAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGTCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTCTTTCAGTTTTAATCATTTTGTCTCTTACAGTTTCTCCCATATTTGATTACACCTAAGGTATTTGTCTGTAAATTTATTTGTCACATCGGTTGGAGAGGAGAACGGAACACTTTATAAGAGTGTGGAAACCTCTCCCAAGGCGATGCATTGTGGAAACCTTGAGGGGAAGCCTGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTGGCGGTGGGCTTGAGCCGTCGAGCGATGCACCAATGAGGAGGCTAAACCCCGAAGGGGTGAACACGAGTTGGTGTGCCAGCAAGGACGCTGGCTCCAAAGGGGGTGGATTGAGGATTCTACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGTTGGAACCCGAAGGGGGTGGATTGTGAGATCTCACATCGGTTGAGGAGGAGAACGAAATACCCTTTATAACGTGTGAAAACCTCTCTCTAGCAGACGTTTTTTAAAAACCTTGAGGTTGATGTGCGGATTGGGATGCGATGTTTTTGTTTGATAATTATTTAATAGGTTAGATGTATGAATTAGTTCTTGATGTTGGAGCATTTTTTAAAATTTAGTTTATGTTCTTTAAAGCTTTCAATTTAGAATGGTAATATTGGTTGATTATAAACTCATATGATATAATATTGAATTAGTAGAAAGTTAAGAGGAGAAAAACAAGGTCATCTAAGATGAGCAATATCAAAGTTCTACCAATTCATAGATGTTTGAAGCAAATTTGAAGCTTTTGTCATCTTTTATCTCCAAAGGTTGCTAGACTGCTCAGTCGATTTGGACCTTTTCTGGAAGCTTTTGAAGTGTCTTTGGAAAGGTTGCTTGTGAGATCCCACATCGGTTAGGGAGGATAACGAAACATCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATATGCGTTTTAAAAACTTTAAGGGGAAGTCCGAAAGGGAAAGCCCAAAAAGGATAATATTTGCTAGTGGTGGGCTTGGGCTTGGGCTGTTACAAATGGTATCAAACCAGATACCGAGCAATGTGCCAGCGAGGAGGCTGAGCTTCAAAGGGGGTGGATACAAGGTGGCGTTCTAGCGAGGAAGCTAAGCTCTGAAGGGGTGGATTGGAGGGTCCCACATCGATAGGAGAAGGGAACGAGTGCCATCGAGGACGTTGGGCCCTGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGAAGGAGAACAAAACATTCTTTATAAAGGTGTGGAAACCTCTCTCTAGCAAACACGTTTTAAAAACCTTGAGAAGAAGTCTGAAAGGGAAAATCCAAAGAGGACAATATCTGCTAGCGGTGGGCTGGGCTATTACATTGCCAAACTGCTTAGTCGATTTGGACCTTTTTTGGCAGCTTTTGAAATGTCTTTGGTTTGGAATAGGGATTGTTGTTTCCTCCTATTAGTGGGAAAGGCAACATTCTATGGAAGACTTGTTTCTTCCCTCCCATTATTTGGAGGATTTGGATGGGGAGGAACCATAGAATTTTCGGAGAGGCGAGAGATCTGTGGGGGAGTTACGGGAGATTATTAAGTTTAACGCCTCCATATTGATCTCGGTGACTATGGTCTTTCTGTATTGGTTGGTTTAGCTTTATTCTTTTGAATTGAAGTTCATTTTTTAGCTTATGGTGCTTCCTTTGTTGGGCTGTTTTTTCAATCCATGTTCCTGTATATTCATTCATATTTTTGGATAAAAAGGTAAGAACAAAATCTTTGTGGTTCATTAATGCTTGGGAAGCCAACAACGGGACAAATTGAAGGGCATCACAAGAAATGCATAGTGGCTTTTGTGGTTGTGAAAGCTGTTTTTGGTAAACTTACCAGGTCCAATTATTAATGAAAGCTCCTTTAAGCATCTCCCTGACAAGTTGTCATGCTCTTTGACAACATCGTTTCTTCTTGATGGCCAAGAATCGCCCACACAAGCTCCCCCTGAAGGGAGAGTTGGAAACATAATGAACACTCTCCAGCCAATTATGAAACCACCATTCCTTGGCATAGCTGGGCCATCCTGGATTTGTACTAGAGACATCACCCATGACTGCAATTTTAGAGAGACACGAAAGCGAAGAAATTGAAACCTTTCTTATTGGATGATCATGATACTTCCCAAAAATCAAAATTCTTGATCAATGTAGGAACAATATCACCACTTTTGTTCAATAAGATACAAAAGTGGATTGAACCTCGAAGTTTCCTTTGTAACTCCTGGAACTTCTTTGTAGTGGCTCCGGAAGAAATCGAAGGATTTCTTGGAAATCCTATGCATTTTTATATCCCACAACTTCGCAAAGAGGATTCTTAGTTACATAAAGGGGATAGAGTTGATCATGGATTGTTTACCAAGGTAGAGCTTTGCTATGAAGTATCGCTATCACCACAGTCAGCTTCTTCAAATTAAAAAATTGATGGATTTTGAGATAGCCATCTGTTGGGTTCTCATCTAAAATGGTAACAGCACAAGCCGATCGCTAGCAGATGTTGTCCTCTTTGGGCTTTCCCTCAAGGTTCTTAAAATGCATCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCCTCCTCAACCAATGTGGGATCTCACAAAAATAATTGGCATTGTTGAAATTACTCCAATCTAGATGCTCATTATTTTTTTCTTCCATGTGGTTCTCTCCTTTCTGTATTCTCGAGGTCTCCGGTGGTTCATGTACTCTCCCTTTTGTGTGCTTCTCCTCTTCTACCAACTGTTTCTCCTACCCTAAGTACGCCATTGATTTCTGTTTTATTATGGGTTATTTCGGGAGTATTATAGCATTAGTTTATTGGATGTCATGCTATGTGGTTAGTACCGTCACCTCAACACACTTTTTGCAAGGTGTTCCATCACTTTTTTTATTTGTAGGAGTCTTTGCAATTCCTCATTCATTTCTTGCATTTTCATCTCCATGGTCTCCATTCTTTCCCCCCATTTTCTTTGAGCCATTTTGATCTCCTACTCAGTTCGTAATGTGTGTGGACACCAAACTTTTAGGAACTAACTATGTTATGTCTGTGTGCCCAAGGGTGCAAAAGAGCACCATACTTGACAGTCCTTCCAAATTCAGGAAGGCTAGCTACTCTCATACCTAAACATTTTGTAAAACCATAAACTGTCTTGCTTCATGCTCATGACATTTATGGCTACATATTACATACATGTACTGTGTTAATGGCTACATATACATATACATACCTCGAGGGAGGCAGTTTGCTGTTGATCAATAGGATTCCAGTCAAGATCATGGGGAAATTCGCAGAGGGCATTGTCCTTTGTTTATAAGGACGTGTAAAAGGACATAAATTCTGATACAATTTCTTTTTCGTTTACTAAACAACTTCTGCCTTGTGTGGATAAAATTTCCATGATGGTACTCTTTCGTTTCTTTGTAGCCATGATACGATGGAAAAATTTGGAGTTTATGTCACCTTTCTCTAACCATAGTTTTCTTACATTTTTGTCTCCAAGATTGCTCTTCCTTTTCCGCCAATGAAATGAGTTCTGCTTTCCTGAGCTTTTTCCGTGTGTTGAACTAGTGTGATGGAGCTAGTTTCCTCCCTCTGATCAAGGAGGCACCAACCCAGTAGGAGAGAGCAATAAATCTGCTGTTTTTGGGTCTCTTAACGAGTATTGATGTTTTCATTGGCAATAACACATTAAAAAACTAAGCAGTCTTGGAATTTTATACTTTTATACCCCTTATTGAAAGTTTTGAATTTTATACTAAATGAGTATAAATTGTTCCTTTCATTCGTTTTTCAGATGTTAATATCGAGTCACCTCCCTCAATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGTATGTGACTTTTGGCAGTTTATGACTCAACATTGCTTTCTAAACTCGAACAACAATTAATTTCTTTGTTCTCTTCAAAAAAAAAAGAAAAAAAAAAGATACCCTTTTTGAAATCACTTCAGGAAGTGACGTTGTTATTATTCAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTAATTTCTGAAGTTTCTTTTTATAAGATCACTTCATCTTTAATCATTACCATTGACACCGTCTTTGAACATGGAATTTAGATGATGTCACATGCCCTGGTAGCTAGTTGAACACATTAAATTTCATTCAGTTTTGAGTAATCTTTTCCTTTCCTATATTTAAGCTGAAAAAACAATCACTTGTTGACTGCCATCTTCTTTCATCTATGCGGATCCGAAAGAGGCAGACTCCATTTTTTTTTATCAAGTCTTAGCTAAAGATTCAAGGTATTAAGAATTCAATGGCGAAGTGATGAGGAGCTTTTGCCTCTATGCACCTTGTATGCACCCAGATACTATATGTGAGATCCCACATTGGTGGGGAGGAGAATGAAGCATTCTTTTTAAGGATGTGGAAACCTCTCTCTAGCAAACACGTTTTAAAAATATCTTGAAGGGAAGTTCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGAGCCGTTACAAATAGTATCAGAGATAGACATCGTACGATGTGCTAGCGAGGAGGCTGAGCTTTGAAGGCGGGTGGACACAAGGCGGTGTGCTAGCAAGGATGCTGGACCCCAAAAGGGGGTGGATTGTAGGGTCCTACATCGATTGGAGAAGGGAACGAGTGCCAGCGATGACGCTGAGCCCCGAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGTATGAAACGTTCTTTATAAGGGTGTGAAAACCTCTTCTAGCAGACGTATTATAAAAACTTTGAGGGAAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGAGCAGTTAAACCATACACCAATTAGTGCAAGTTATTTGGAAAAATAACTTTAAGGAATCGATATGAATATTGGTCTCAAAACCCCACGCAGTTCTATAGTTGATGTGTTCGATATTCAACCAATAATCTAGGCTGTTTCTTTGGTTTGTTTCTTAAGTAGAAATCATGTCACGTCGAGCCCTGAAAAGCATCATATATTTAGTGATATGAATGGGTTCTGAAATACTGAGTTTTCATTAGAATATCTTCCTGCTTAACTGCTTCTTGGAGTTTTATCTCACAAGTTCTATGTTTGGCTGAGTACTTCAATCCGATGCATCTAACTCTTACAGGTGAGGAGATACTGCTTTTCTATTGCCGATTAGCTCGGTGTCGAACGAGCCCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAATGTATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATACATTTTATGTTTGCCTTTGGAACTATTAGCCTTAAAACTCTCCAAGCTGAAAACATCCCCCTAATGGGATTGCAGTTGAAGGAAATTAAAGGCTTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTAGGACTTCTATGTACCATCCATGTCGGTAACTAAATAATGATATGTCACGTTTATTGTACAAATATTGTTTGATCATGCATGATTCGAC CAGGTAGGAGATTTTTCAACCGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTTATGCTTCTATAGAGCTTTGTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTGAAAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGTCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCCTCAATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGAGGAGATACTGCTTTTCTATTGCCGATTAGCTCGGTGTCGAACGAGCCCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAATGTATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATACATTTTATGTTTGCCTTTGGAACTATTAGCCTTAAAACTCTCCAAGCTGAAAACATCCCCCTAATGGGATTGCAGTTGAAGGAAATTAAAGGCTTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTAGGACTTCTATGTACCATCCATGTCGGTAACTAAATAATGATATGTCACGTTTATTGTACAAATATTGTTTGATCATGCATGATTCGAC ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGTCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCCTCAATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGA MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR Homology
BLAST of CmaCh12G009770 vs. ExPASy Swiss-Prot
Match: Q8BHA0 (INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15 Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy Swiss-Prot
Match: Q6PI98 (INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15 Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy Swiss-Prot
Match: Q5BJY3 (INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15 Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy Swiss-Prot
Match: Q9UTE8 (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 4.8e-13 Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy Swiss-Prot
Match: P32617 (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IES6 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08 Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy TrEMBL
Match: A0A6J1HLV4 (INO80 complex subunit C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465726 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy TrEMBL
Match: A0A6J1FBP9 (INO80 complex subunit C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444164 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy TrEMBL
Match: A0A6J1CRZ9 (INO80 complex subunit C isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014214 PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 7.3e-65 Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy TrEMBL
Match: A0A1S3B479 (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64 Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of CmaCh12G009770 vs. ExPASy TrEMBL
Match: A0A0A0LJN6 (YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63 Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0
BLAST of CmaCh12G009770 vs. NCBI nr
Match: XP_022937916.1 (INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937918.1 INO80 complex subunit C isoform X2 [Cucurbita moschata] >XP_022966011.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966012.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966013.1 INO80 complex subunit C isoform X2 [Cucurbita maxima] >XP_023536867.1 INO80 complex subunit C-like [Cucurbita pepo subsp. pepo] >KAG6586168.1 INO80 complex subunit C, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 260.8 bits (665), Expect = 6.1e-66 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of CmaCh12G009770 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia]) HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64 Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0
BLAST of CmaCh12G009770 vs. NCBI nr
Match: XP_038889510.1 (INO80 complex subunit C isoform X1 [Benincasa hispida] >XP_038889511.1 INO80 complex subunit C isoform X2 [Benincasa hispida]) HSP 1 Score: 255.4 bits (651), Expect = 2.6e-64 Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of CmaCh12G009770 vs. NCBI nr
Match: XP_008441777.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis melo]) HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63 Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of CmaCh12G009770 vs. NCBI nr
Match: XP_031736376.1 (INO80 complex subunit C isoform X1 [Cucumis sativus]) HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63 Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0
BLAST of CmaCh12G009770 vs. TAIR 10
Match: AT4G38495.1 (CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). ) HSP 1 Score: 171.0 bits (432), Expect = 5.9e-43 Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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