CmaCh12G008810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Auxin-responsive protein
Location	Cma_Chr12: 6660978 .. 6662657 (-)
RNA-Seq Expression	CmaCh12G008810
Synteny	CmaCh12G008810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAAGTCAGTACTCTCAATTTCTCTCGATTTATTTATTTATTTATTATTTAAGAAAAAATGGGATTTTTACAATTAAAATTTTATATAATACATTAACAAATTTTTATTTGTTCTTAATAATGGAATTTTATTTTAAAAAATTCTAAAATTTAACAAATTTGCTCTATTTATAGATGTGCTTTAAATTAGGGTAATCTAAGGAATTATTTGATAAAGGATTTAATTTTTATTTTTAAAAACTAGATGTTTGTTATAAAATTCCTTAATTCTATTATTGAAATTTAATTTATGATTTTAAAATATCTATAAAAACTAATAGAAACTCCTCCAAATTTGAATTTCCACCCATATTAATCAAAACCTCTAATAAAATAACAGGGTGGAAATCTTCCCATAGCAAACGTGATCGAAATAAAACAATATCTACTAGTTATGGGCAATATCTACTAGTTATGGGTCTAGGTCGTTACAAATGGTATCAAAAGTAGGGAGGAGACTATTCCCCACAAAGGTAGACAGAGAGGGTGTGCCAATAAAATAAGGACTAGCAAGGACGCTGGGCCCAAAATAGGTGGATTTGATGGGGTCTTACATTGATTGGAGAAAAGAAAGAGTGCTAGCCCCATTGATTGGAGAAAAGAACGAAGGTCAGCGAGCGTTCTGAGCTCTAAAGGGGTAGCGAGAGCCCTGAGCTCTAAAAGGGTGAATTGTGATATCCCACGTTTGTTGGGGACTCATTGAGCTCTGAAGGGGTGGATTGTGATGTCTCACGTTTGTTGGGGACTCATTGAGCTCTAAAGGGGGTGGATTGTGATGTCCCACGTTTGTTGGGGACTCGTTGAGCTCTGAAGGGGGTGGATTGTGATGTCCACATTAGTTGGGGACTCTCTAAGCTCTGAAGGGGGTGGATTGTGACCTCCCACATTGGTGGAGAGGAGAACAAAACACCTTTATAAGGAAGAAGACAATGTCTGCCCGCGTGGACCCGGACCGTTACAATATCAATCTTTTATCGACACATGGATAGCTAATTATCACGTAAATTGATTAATTTAAAAATGGGAAGTAATTATTATTATTATTATCATTATTTTTTGGTGAAAAAATAATGTAAATAAAGAGAATAATTAATAACATGAAATTCATGTGTATGTGTGGCAGTGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAAATTATATATTTTATGAGAAACCCATCT

mRNA sequence

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAAATTATATATTTTATGAGAAACCCATCT

Coding sequence (CDS)

ATGAACACCTTCCACTCTCACACACAATCCCCCGCCGCCGCTGCCGCCGCCGAGTATTTCAAGATGAGGCGGTGGCCGGAGACCCAACTGGGTCCTCCTCCTCCGCTGCAGCAGCAGCAGCAGCAGATGGAGGAGGAGGAGGATTTCGCGGCGGTGATTCCGCCCGTGACGGTGGTTCTTGAAGGGAGAGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTTGCTAAGGCCCTTAGAAGGATGTTCGTTGACGACGATGACGGCGGCTGCGGCAGCGGTGGCGGTGGCGAACCCTCCGGTGACCGGCAGCTGGACTTGGCTAACGCGGTTCCCGGTCATCTTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCCGGTGATCTCAATTGGAATGATTTCGTGCGGGTGGCGAAGAGAATTCGAATACTGCCAATAAAAGCAAATTCAAGGAGGCGAAGAGGAAATAATTAA

Protein sequence

MNTFHSHTQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGNN

Homology

[Close]

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot
Match: Q9FKM7 (Auxin-responsive protein IAA33 OS=Arabidopsis thaliana OX=3702 GN=IAA33 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 45  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEP 104
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD          G + 
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD----------GADS 123

Query: 105 SGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           + D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 TDD--LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

[Close]

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot
Match: Q6K846 (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           V V  EG AI +++ L  H+SY+ LA  L RMF  +D       G  + + D   D A  
Sbjct: 95  VKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTND-----HQGEKKMANDDHGDAA-- 154

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
             G +V YED + D +L GD+ W+DF R  KR++IL
Sbjct: 155 --GPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181

[Close]

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot
Match: A2XB18 (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica OX=39946 GN=IAA10 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 40  QQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSG 99
           Q+  EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G C S 
Sbjct: 150 QKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCAS- 209

Query: 100 GGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
                     L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 210 -----HNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

[Close]

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot
Match: Q0DWF2 (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 40  QQQMEEEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSG 99
           Q+  EE E    V   V V ++G  I +++ L+ H SY++LA AL  MF     G C S 
Sbjct: 150 QKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCAS- 209

Query: 100 GGGEPSGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
                     L L +    + + YED + D +L GD+ W  FV   KR+RI+
Sbjct: 210 -----HNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 255

[Close]

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot
Match: P0C132 (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 50/162 (30.86%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 6   SHTQSPAAAAAAEYFKMRRWPETQLGPPPPLQQQQQ-----QMEEEEDF----------- 65
           S +QS    AAA+  K R  P+ Q+   PP++  ++     Q ++ +D            
Sbjct: 98  SPSQSSVVTAAADPEKPRA-PKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAG 157

Query: 66  AAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQ 125
           AA    V V ++G    +++ L  + SY  L+KAL +MF     G CGS G    +  + 
Sbjct: 158 AAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKI 217

Query: 126 LDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
            DL N    ++  YED + D +L GD+ W  FV   KR+RI+
Sbjct: 218 ADLLNG-SEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 257

[Close]

BLAST of CmaCh12G008810 vs. TAIR 10
Match: AT5G57420.1 (indole-3-acetic acid inducible 33 )

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-36
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 45  EEEDFAAVIPPVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEP 104
           E++  ++V+PPVTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD          G + 
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD----------GADS 123

Query: 105 SGDRQLDLANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPIKANSRRRRGN 164
           + D  LDL+NA+PGHL+AYED+ENDLLLAGDL W DFVRVAKRIRILP+K N+R+ + N
Sbjct: 124 TDD--LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPVKGNTRQVKRN 170

[Close]

BLAST of CmaCh12G008810 vs. TAIR 10
Match: AT2G33310.1 (auxin-induced protein 13 )

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-09
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 131 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGL----TSQFTKPLRLLDG 190

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 191 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 222

[Close]

BLAST of CmaCh12G008810 vs. TAIR 10
Match: AT2G33310.2 (auxin-induced protein 13 )

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-09
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGL----TSQFTKPLRLLDG 191

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 192 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 223

[Close]

BLAST of CmaCh12G008810 vs. TAIR 10
Match: AT2G33310.3 (auxin-induced protein 13 )

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-09
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGGGGEPSGDRQLDLANA 115
           + V ++G AI +++ L+ H+SYE+LA+ L  MF   + G  G          + L L + 
Sbjct: 131 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGL----TSQFTKPLRLLDG 190

Query: 116 VPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
               ++ YED E D +L GD+ W  F+   KR+R++
Sbjct: 191 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVM 222

[Close]

BLAST of CmaCh12G008810 vs. TAIR 10
Match: AT5G65670.1 (indole-3-acetic acid inducible 9 )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 56  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDGGCGSGG--GGEPSGDRQL-DL 115
           V V ++G    +++ L  + +Y  L+ AL +MF     G CGS G  G +   + +L DL
Sbjct: 219 VKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDL 278

Query: 116 ANAVPGHLVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL 152
            N    +++ YED + D +L GD+ W  F+ V K+++I+
Sbjct: 279 LNG-KDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIM 316

The following BLAST results are available for this feature:

BLAST of CmaCh12G008810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM7	2.6e-35	63.87	Auxin-responsive protein IAA33 OS=Arabidopsis thaliana OX=3702 GN=IAA33 PE=1 SV=...	[more]
Q6K846	1.2e-08	39.58	Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 P...	[more]
A2XB18	2.1e-08	33.93	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica OX=39946 GN=IAA10 P...	[more]
Q0DWF2	2.1e-08	33.93	Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10...	[more]
P0C132	4.7e-08	30.86	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30...	[more]

BLAST of CmaCh12G008810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57420.1	1.9e-36	63.87	indole-3-acetic acid inducible 33	[more]
AT2G33310.1	9.7e-09	32.29	auxin-induced protein 13	[more]
AT2G33310.2	9.7e-09	32.29	auxin-induced protein 13	[more]
AT2G33310.3	9.7e-09	32.29	auxin-induced protein 13	[more]
AT5G65670.1	2.2e-08	32.32	indole-3-acetic acid inducible 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..164
None	No IPR available	GENE3D	3.10.20.90		coord: 53..162 e-value: 2.4E-19 score: 71.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..47
None	No IPR available	PANTHER	PTHR31734:SF7	AUXIN-RESPONSIVE PROTEIN IAA33	coord: 43..160
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 67..152
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 39..151 e-value: 1.8E-16 score: 60.8
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 43..160
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 53..155 score: 14.468489

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008810.1	CmaCh12G008810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding