CmaCh12G008460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin
Location	Cma_Chr12: 6274154 .. 6277465 (+)
RNA-Seq Expression	CmaCh12G008460
Synteny	CmaCh12G008460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTAGTTCATATCTCTCTCTATCTTTGTCTGAATATAAGCGATTCATACCTTAACCTCGCTACAATGCTTTTATTGTAATTTCTCTGGATTAACTAGTTTACAAGCACGGAAAACTCAAAGAAGGCCTGTCATAAAATTTGTGTTTTCATCTGAAGTATACTTTTTTTTCTGGAGCCTGTGCTGAATAATTTTCAGTTACTACTATCTTGTTGAATTTACCTTCTAATTACGTACTACTGTTTCCATATATTCTTTATTATCTATGTAATTCTCTGTTTGTTCTAAACTATGTCATAAATTCAAGGTGAAATTATTTGCCTATTAAACAGTAGAACAAAGGCTTTTAACACTTGGTTCAAGAGTGGCCAGTTTGATAGTCGAATGAGAAACTTACTGTCGGCAATGTACAGGGTCATGTGGTGGAGATCATCTGTTATAATGTTTCTAGTAAGTCGGTGGCGAATATACTTAAGTCAGTATGAGGGTGGAAATTCTTTCAAAGCAGGATTCATTTTACTCCAGTTAACCAGGAGTTCAATTTTCTTGAAAGATCAAACATTCTGAACTTTCTTTAATGAGAAGTACAGGCCTTTTTGTGATCATATACAGTTCAAAGCTTCTAGTTGTAGTGCTTTATGCAGTGATCTTTGCTATCACTCAACTTCTTTGATCAATTTAGACCCAGTGTGTTTTTTTGTTAGTAACCACGAATCTCCTATTGATATTGTTCACTCTGAGCATAAACTCTCATGGTTTTGCTTTTGATTTCCCCAAAAGGGCTCATACCAATAGAGATGTATTCCTTACTTATAAACCCACGATCATCCCCTTAATTAGTGAATGTGGGACTCCCTCTCAATAATCTTCAACAATTTTCCCTTCGAACAAAGTATACCATAGAGCCTCCCTTGAGGCCTATGGAGCCCTCGAATAGCCTCCCCTTAATTGAGGCTCGACTCCTTCTCTAGAGCCCTCGAACAAAGTACACCTTTTGTTCGACACTCGAGTCACTTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTTCGACCCTTGAGGATTCTATTGACATGACTAAGTTAAGGGCATGACTTTGATACCTGTTAGGAACAACAAATCAACATAATGGTATGGTATTGTCCACTCTAAGTATATGACTTTGATTTTGGTTTCTCCAAAAGGCCTCATACCAATAGAGATGTATTCCTTACTTATAAGCCCATGATCATCCCCTAATGTGAGACACCCTCCCAACAATCCTCAACATTTTATAATCTCCTTTGGCAAGAGAACTCTCGTCTCCCTGGCCTTTGGTTTGTTTGATTAAATGCTGTGAAATCAAATCTTGTCTCAACAAACCTAAAAAGGATATTAATTGGCAACACTTTTTTCTGACAGATATTCTATTTCTCAAATTGGTTTCTTTGGTTTGTCTCTTCTCTTGGCTTTGACACATTTATATTTTCTCTCACTTCATTCTTCTTCATCTGTTGAGTTATGGGGTCAGTTCTACGTTTGTTTGCATTTGGTAAGCTTTGTGCTTGTTATTTTATTTGTTCATTAGTTTTTATTGCATCATATCAAACCAAAATAAGTAAATCTGGTTCTCTCTGTCTCTCTCTTTTTTTTTAATAAGATACAGAAAGGATGTTATAAACCACCAAAAAAAAGGACAGCCTGCTCGTTCACTTTTTGTAAAAATTTATACACACCATATGGACCTGAGTACTAACAATTTCAATTGATTCACAATTTCCAATTGACTGTGACTATTCAGTATGTTTGTTATGCCATATTTATGTATAGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAGTCCCTTATTGATCAGCCAATTGTTGATCAGCGCTTGATCTTGGTGGGAAGCGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTATGCCTCAAATTCATAGATTTACTACATTTGGTCATCAAGCATCGGATATTCTGGAAATATTAAGGTGAAGACAATACGACAGCTGCGGCTCTAACTAATATTTGCTATGTATTTCCAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGGTTTTCTTCTACCCACCCCAACATTTTTTTTTTGTGAACTTACACGTTTTCTGCTTAGGGACTGAATTATTTGAGGGTGGATTTTTTCATAGTTATGCTCAAATTACAGGTCTCAGTCTTTGAACTTTTAAGCTTATGTCTTAATTAGTCATTCAACTTTCAATAGGTTACTGAACTTCAAAAGTATCGAATAAATCTCTAAATTTTCAATTTTGCATTTAATAAGTTCCATCCCAACAATTTTGTGAACTTCTGACAAACTTCTGACGTGTTTTTAAAAGTATATTTTCTGATTAGGGACTGAATTAGTTGTGAGCGTAGACTTTTTCATAGTTATGATCTTGCTTAAATTTCAGGTTTTAGTTTTTGAACAACCTTCCATTTTATGTCTAATAGGTTGCTGAACTTGAAAAGTGTCGTTTTCCTCAAACTTTCAATTTTGTGTTAGTAAGCTTGAAAATTTTAGAACATCTTGATTAAGTCAAAGAACTATTAGATACAAAATTAGAACTATTAGATACAAAATTAAAAATTTAGTGACCTATTAGAAAAATTGAAAATTTTAGAAAATTTTAGAATGTATTAGGCGTTCTTTAAATCTCAATGAATTATCATACACAAAATTGAAAGTGATTGATCTACATTAGCTCATAGACTAAATAGACATAAATATGAAACTTATGATTTTCTTTGTTGGATTTGGATTTAAAATATGGAACTCTGTCTCATCACACATTTTCTTGATCACTTTCCCTTCTTTGTGTAGATGATAATGAGTTCGAGGAGATCGACATTGTCAGTACAAACGATTTCTACCAATCTCGTGAAGCCGATTCTGGGAATTGGTAAGGGCCGAAAGTTTTCTTCTACTATGTGTGGTAGTTTATGATGTTCAGCCATCAAGCTTGTGGTGTATTATTGAAATAACTGTTCTATCAGTTGGATGGAATTGAAAATGATGCATAAGAAAGTAGACTTTATGCAGGATTAGATATCGTAACTCCATGCATTCTCTTTGTTATCCCCCAAAAGTTGCATTGGTGATTGAATTCATTCATGCATTGCTACAAGTTCTATAATATATGAGTTGAGAATTTTGTTAGGACCTTTTTAATTTCCTTTACACTATATGAATGTGGTTTTTAATTGCC

mRNA sequence

ATGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAGTCCCTTATTGATCAGCCAATTGTTGATCAGCGCTTGATCTTGGTGGGAAGCGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGAGTTCGAGGAGATCGACATTGTCAGTACAAACGATTTCTACCAATCTCGTGAAGCCGATTCTGGGAATTGGTAAGGGCCGAAAGTTTTCTTCTACTATGTGTGGTAGTTTATGATGTTCAGCCATCAAGCTTGTGGTGTATTATTGAAATAACTGTTCTATCAGTTGGATGGAATTGAAAATGATGCATAAGAAAGTAGACTTTATGCAGGATTAGATATCGTAACTCCATGCATTCTCTTTGTTATCCCCCAAAAGTTGCATTGGTGATTGAATTCATTCATGCATTGCTACAAGTTCTATAATATATGAGTTGAGAATTTTGTTAGGACCTTTTTAATTTCCTTTACACTATATGAATGTGGTTTTTAATTGCC

Coding sequence (CDS)

ATGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAGTCCCTTATTGATCAGCCAATTGTTGATCAGCGCTTGATCTTGGTGGGAAGCGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGAGTTCGAGGAGATCGACATTGTCAGTACAAACGATTTCTACCAATCTCGTGAAGCCGATTCTGGGAATTGGTAA

Protein sequence

MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEIDIVSTNDFYQSREADSGNW

Homology

[Close]

BLAST of CmaCh12G008460 vs. TAIR 10
Match: AT5G57860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-32
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QP+ +QRL+L+ + EVLEDSK+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALTLRKDDNEFEEIDIVSTNDF 93
          DQKVENDAVVALTL+KDDNEFE+++I    DF
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of CmaCh12G008460 vs. TAIR 10
Match: AT5G57860.3 (Ubiquitin-like superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-32
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QP+ +QRL+L+ + EVLEDSK+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALTLRKDDNEFEEIDIVSTNDF 93
          DQKVENDAVVALTL+KDDNEFE+++I    DF
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of CmaCh12G008460 vs. TAIR 10
Match: AT5G57860.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-32
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QP+ +QRL+L+ + EVLEDSK+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALTLRKDDNEFEEIDIVSTNDF 93
          DQKVENDAVVALTL+KDDNEFE+++I    DF
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of CmaCh12G008460 vs. TAIR 10
Match: AT5G57860.4 (Ubiquitin-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QP+ +QRL+L+ + EVLEDSK+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVEN 67
          DQKV +
Sbjct: 61 DQKVSH 66

[Close]

BLAST of CmaCh12G008460 vs. TAIR 10
Match: AT5G37640.1 (ubiquitin 9 )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1  MAMYIRIKR-HKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTL 60
          M+M I  K   + T  I     +T  N+K K++ +   P+  QRLI   SG++L+D +TL
Sbjct: 1  MSMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIF--SGKLLDDGRTL 60

Query: 61 ADQKVENDAVVALTLR 76
          AD  ++ D+++ L LR
Sbjct: 61 ADYSIQKDSILHLALR 74

The following BLAST results are available for this feature:

BLAST of CmaCh12G008460 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G008460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57860.1	3.9e-32	71.74	Ubiquitin-like superfamily protein	[more]
AT5G57860.3	3.9e-32	71.74	Ubiquitin-like superfamily protein	[more]
AT5G57860.2	3.9e-32	71.74	Ubiquitin-like superfamily protein	[more]
AT5G57860.4	2.6e-20	69.70	Ubiquitin-like superfamily protein	[more]
AT5G37640.1	2.0e-04	35.53	ubiquitin 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 3..75 e-value: 7.4E-9 score: 45.4
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 5..76 e-value: 3.6E-10 score: 39.5
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..79 score: 15.405305
None	No IPR available	GENE3D	3.10.20.90		coord: 1..93 e-value: 8.4E-20 score: 72.7
None	No IPR available	PANTHER	PTHR47725	OS03G0364000 PROTEIN	coord: 1..99
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008460.1	CmaCh12G008460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding