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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTTTCTGAACTATTTGAAAAAATTATACCAAGAGATATCAGTTCCTTGTGGAGTTACTGGGGCATTGAGTTGCTAGTATTGGCAAACTTCATGTTCCAAATTATCTTAACTTTCAATGGATGTCGTCGAAGGCACACACCGGGATATAAGCTCAGCTTAACCGTTTGGTTTTCCTACTTATTGGCTGCTAAACTAGCAACGGTTGTTCTGGGCAAGCTAACAACAATCGAAATAGGCAAAGACCAACGCAACACGCACACCCAAATTCAGGCGTTGTTGGCACCATTGATGTTCATGCAAATAGGAAATCCAGATACGATCACAGCCTACTCAATCGAAGACAACCAGCTAGGAGTGAGGCAAATTTTCAGCTTGGTGATCCAAGTGAGTATAATGTTCTACATTCTTATAAGGTCATGGACAAATTCAAGAACATCGTTTCTTTACTTGCCAATGTCTTTAGCTGGGATAATCAAGTATGCAGAAACATCATGGGCTCTAAAATCAGCACTCAATGGAAACTTCGGCTTCACAATTGCCGATTTCTTCAAATATCACGAAGTAGCTCGTTTATTCGACAAACTGCCACAGGGAGAGAACGAACTCCCAGAGGCAAAATTGATCTTAAGAGCTTATTATAGATTTTGCTGCCTAAAACCACATCTAGAAAATTGGCTTTACTATCCTCCAACTGATTGCGAATACCAAAAACTCTACATCGACGACTGTGACTATGAAGACGTGTTCAGAATTACAGATTCTGAGCTGGGTTTCATGTACGATGCACTTTATACGAAAGCACCGGTCGTATATACTCGTAAGGGTTTAATTCTCCGTTGTATTAGCTTACTTAGCTTGATAGCCACACTAGTTGGGTTTTCAGTCTTGTTCAAGGATGCTTTTGTGTATAATATCAGTGTTGGATTTATCCATTTTGTGTTGATAGCATCTCTGATAATTGAGGTATATCAGATCTTGAGATTACCATACACAGATTGGGCTATAATCCAAATGATTAGGCACTATGAAACTTTTCCTTTTCTTATGGGTTTCTTGCAGTCTCTAGCCCCTCAATCAGCAACTTGGAGAAGATGGTCCAATACAATGGGACAGTTCAATCTTTTAGATTTCTGCTTGCAAACCAAGCACCGAAACTACAGCCGAATTAAAATTCTCCGATATTGGGGCATGGATATGAAACTCCGAAAGCAATTGAGTTTGGACCGAATCGACGTCGATCCGAAAGTGAAAGAGCTTGTGGTAGCAGAACTTAGAGAGATAGATAAGATCAAAGGACAAGAAGAGTTCGATCAAAGAGGCCAATGGACAATCGGAAGGTACCGAGAAAAACTCAAACTCAATGACGTGATCCAAGCACTCGAAACAACAGTAGCCAAGAGACCATTCGATAAGAGCATATTCATATGGCATATCACAACAAATATTTTCTATCACATACAGAGCTTTCATGATACTACTGACACTACTAAAATGGAAGCTATCATGAATATATCAGATTATATGATGTACCTTTTGGTGACGCGTTCGCACGTGCTATCGTCAACAACTGGAGATATCATATTTGACCATTCGTGTGTGAAGCTCGGGAGGTTAACGAGAACTGGACGTCTGAACAAAGAGGAAGCCTGCCAAGATCTGTTAGGTTTACAGAAAGAAGGTATCCTTCAAGTGAAGGAACCACATGCACCACCTGAATCAGAAGCAGAGAAAGTAGTTGTAGGGAATTGGAATCTGCTGAAGGATGTAAAAGAATTAGCAGATAGCTTATCAACAATGAGCAATGAAAACATATGGAAGGTAATAGGGAGTATGTGGGTTGAGATGTTGGGATATGCAGCAAGTCACTGTGAAATGGAATATCATTCAGAACATATCAGACATGGAGGTGAATTGATCACTCATGTTTGGCTTTTGGTAGCACATAATGTTACCAAATACAGTTCATATGAGTATCATTTCGGCAGTCAAGATGAAGAGACTCATTAA mRNA sequence ATGTTTTCTGAACTATTTGAAAAAATTATACCAAGAGATATCAGTTCCTTGTGGAGTTACTGGGGCATTGAGTTGCTAGTATTGGCAAACTTCATGTTCCAAATTATCTTAACTTTCAATGGATGTCGTCGAAGGCACACACCGGGATATAAGCTCAGCTTAACCGTTTGGTTTTCCTACTTATTGGCTGCTAAACTAGCAACGGTTGTTCTGGGCAAGCTAACAACAATCGAAATAGGCAAAGACCAACGCAACACGCACACCCAAATTCAGGCGTTGTTGGCACCATTGATGTTCATGCAAATAGGAAATCCAGATACGATCACAGCCTACTCAATCGAAGACAACCAGCTAGGAGTGAGGCAAATTTTCAGCTTGGTGATCCAAGTGAGTATAATGTTCTACATTCTTATAAGGTCATGGACAAATTCAAGAACATCGTTTCTTTACTTGCCAATGTCTTTAGCTGGGATAATCAAGTATGCAGAAACATCATGGGCTCTAAAATCAGCACTCAATGGAAACTTCGGCTTCACAATTGCCGATTTCTTCAAATATCACGAAGTAGCTCGTTTATTCGACAAACTGCCACAGGGAGAGAACGAACTCCCAGAGGCAAAATTGATCTTAAGAGCTTATTATAGATTTTGCTGCCTAAAACCACATCTAGAAAATTGGCTTTACTATCCTCCAACTGATTGCGAATACCAAAAACTCTACATCGACGACTGTGACTATGAAGACGTGTTCAGAATTACAGATTCTGAGCTGGGTTTCATGTACGATGCACTTTATACGAAAGCACCGGTCGTATATACTCGTAAGGGTTTAATTCTCCGTTGTATTAGCTTACTTAGCTTGATAGCCACACTAGTTGGGTTTTCAGTCTTGTTCAAGGATGCTTTTGTGTATAATATCAGTGTTGGATTTATCCATTTTGTGTTGATAGCATCTCTGATAATTGAGGTATATCAGATCTTGAGATTACCATACACAGATTGGGCTATAATCCAAATGATTAGGCACTATGAAACTTTTCCTTTTCTTATGGGTTTCTTGCAGTCTCTAGCCCCTCAATCAGCAACTTGGAGAAGATGGTCCAATACAATGGGACAGTTCAATCTTTTAGATTTCTGCTTGCAAACCAAGCACCGAAACTACAGCCGAATTAAAATTCTCCGATATTGGGGCATGGATATGAAACTCCGAAAGCAATTGAGTTTGGACCGAATCGACGTCGATCCGAAAGTGAAAGAGCTTGTGGTAGCAGAACTTAGAGAGATAGATAAGATCAAAGGACAAGAAGAGTTCGATCAAAGAGGCCAATGGACAATCGGAAGGTACCGAGAAAAACTCAAACTCAATGACGTGATCCAAGCACTCGAAACAACAGTAGCCAAGAGACCATTCGATAAGAGCATATTCATATGGCATATCACAACAAATATTTTCTATCACATACAGAGCTTTCATGATACTACTGACACTACTAAAATGGAAGCTATCATGAATATATCAGATTATATGATGTACCTTTTGGTGACGCGTTCGCACGTGCTATCGTCAACAACTGGAGATATCATATTTGACCATTCGTGTGTGAAGCTCGGGAGGTTAACGAGAACTGGACGTCTGAACAAAGAGGAAGCCTGCCAAGATCTGTTAGGTTTACAGAAAGAAGGTATCCTTCAAGTGAAGGAACCACATGCACCACCTGAATCAGAAGCAGAGAAAGTAGTTGTAGGGAATTGGAATCTGCTGAAGGATGTAAAAGAATTAGCAGATAGCTTATCAACAATGAGCAATGAAAACATATGGAAGGTAATAGGGAGTATGTGGGTTGAGATGTTGGGATATGCAGCAAGTCACTGTGAAATGGAATATCATTCAGAACATATCAGACATGGAGGTGAATTGATCACTCATGTTTGGCTTTTGGTAGCACATAATGTTACCAAATACAGTTCATATGAGTATCATTTCGGCAGTCAAGATGAAGAGACTCATTAA Coding sequence (CDS) ATGTTTTCTGAACTATTTGAAAAAATTATACCAAGAGATATCAGTTCCTTGTGGAGTTACTGGGGCATTGAGTTGCTAGTATTGGCAAACTTCATGTTCCAAATTATCTTAACTTTCAATGGATGTCGTCGAAGGCACACACCGGGATATAAGCTCAGCTTAACCGTTTGGTTTTCCTACTTATTGGCTGCTAAACTAGCAACGGTTGTTCTGGGCAAGCTAACAACAATCGAAATAGGCAAAGACCAACGCAACACGCACACCCAAATTCAGGCGTTGTTGGCACCATTGATGTTCATGCAAATAGGAAATCCAGATACGATCACAGCCTACTCAATCGAAGACAACCAGCTAGGAGTGAGGCAAATTTTCAGCTTGGTGATCCAAGTGAGTATAATGTTCTACATTCTTATAAGGTCATGGACAAATTCAAGAACATCGTTTCTTTACTTGCCAATGTCTTTAGCTGGGATAATCAAGTATGCAGAAACATCATGGGCTCTAAAATCAGCACTCAATGGAAACTTCGGCTTCACAATTGCCGATTTCTTCAAATATCACGAAGTAGCTCGTTTATTCGACAAACTGCCACAGGGAGAGAACGAACTCCCAGAGGCAAAATTGATCTTAAGAGCTTATTATAGATTTTGCTGCCTAAAACCACATCTAGAAAATTGGCTTTACTATCCTCCAACTGATTGCGAATACCAAAAACTCTACATCGACGACTGTGACTATGAAGACGTGTTCAGAATTACAGATTCTGAGCTGGGTTTCATGTACGATGCACTTTATACGAAAGCACCGGTCGTATATACTCGTAAGGGTTTAATTCTCCGTTGTATTAGCTTACTTAGCTTGATAGCCACACTAGTTGGGTTTTCAGTCTTGTTCAAGGATGCTTTTGTGTATAATATCAGTGTTGGATTTATCCATTTTGTGTTGATAGCATCTCTGATAATTGAGGTATATCAGATCTTGAGATTACCATACACAGATTGGGCTATAATCCAAATGATTAGGCACTATGAAACTTTTCCTTTTCTTATGGGTTTCTTGCAGTCTCTAGCCCCTCAATCAGCAACTTGGAGAAGATGGTCCAATACAATGGGACAGTTCAATCTTTTAGATTTCTGCTTGCAAACCAAGCACCGAAACTACAGCCGAATTAAAATTCTCCGATATTGGGGCATGGATATGAAACTCCGAAAGCAATTGAGTTTGGACCGAATCGACGTCGATCCGAAAGTGAAAGAGCTTGTGGTAGCAGAACTTAGAGAGATAGATAAGATCAAAGGACAAGAAGAGTTCGATCAAAGAGGCCAATGGACAATCGGAAGGTACCGAGAAAAACTCAAACTCAATGACGTGATCCAAGCACTCGAAACAACAGTAGCCAAGAGACCATTCGATAAGAGCATATTCATATGGCATATCACAACAAATATTTTCTATCACATACAGAGCTTTCATGATACTACTGACACTACTAAAATGGAAGCTATCATGAATATATCAGATTATATGATGTACCTTTTGGTGACGCGTTCGCACGTGCTATCGTCAACAACTGGAGATATCATATTTGACCATTCGTGTGTGAAGCTCGGGAGGTTAACGAGAACTGGACGTCTGAACAAAGAGGAAGCCTGCCAAGATCTGTTAGGTTTACAGAAAGAAGGTATCCTTCAAGTGAAGGAACCACATGCACCACCTGAATCAGAAGCAGAGAAAGTAGTTGTAGGGAATTGGAATCTGCTGAAGGATGTAAAAGAATTAGCAGATAGCTTATCAACAATGAGCAATGAAAACATATGGAAGGTAATAGGGAGTATGTGGGTTGAGATGTTGGGATATGCAGCAAGTCACTGTGAAATGGAATATCATTCAGAACATATCAGACATGGAGGTGAATTGATCACTCATGTTTGGCTTTTGGTAGCACATAATGTTACCAAATACAGTTCATATGAGTATCATTTCGGCAGTCAAGATGAAGAGACTCATTAA Protein sequence MFSELFEKIIPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLAAKLATVVLGKLTTIEIGKDQRNTHTQIQALLAPLMFMQIGNPDTITAYSIEDNQLGVRQIFSLVIQVSIMFYILIRSWTNSRTSFLYLPMSLAGIIKYAETSWALKSALNGNFGFTIADFFKYHEVARLFDKLPQGENELPEAKLILRAYYRFCCLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAPVVYTRKGLILRCISLLSLIATLVGFSVLFKDAFVYNISVGFIHFVLIASLIIEVYQILRLPYTDWAIIQMIRHYETFPFLMGFLQSLAPQSATWRRWSNTMGQFNLLDFCLQTKHRNYSRIKILRYWGMDMKLRKQLSLDRIDVDPKVKELVVAELREIDKIKGQEEFDQRGQWTIGRYREKLKLNDVIQALETTVAKRPFDKSIFIWHITTNIFYHIQSFHDTTDTTKMEAIMNISDYMMYLLVTRSHVLSSTTGDIIFDHSCVKLGRLTRTGRLNKEEACQDLLGLQKEGILQVKEPHAPPESEAEKVVVGNWNLLKDVKELADSLSTMSNENIWKVIGSMWVEMLGYAASHCEMEYHSEHIRHGGELITHVWLLVAHNVTKYSSYEYHFGSQDEETH
Homology
BLAST of CmaCh12G008390 vs. TAIR 10
Match: AT5G45540.1 (Protein of unknown function (DUF594) ) HSP 1 Score: 188.7 bits (478), Expect = 1.5e-47 Identity = 198/799 (24.78%), Postives = 333/799 (41.68%), Query Frame = 0 Query: 9 IIPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLAAKLAT 68 +IP + LW W I +++ + Q IL F RR T + +W +YLLA A Sbjct: 4 MIPPHLRKLWDKWNIRGVIILSLFLQTILIFFAPSRRRTAKKLFLVLIWSAYLLADWAAD 63
Query: 69 VVLGKLTTIEIGKDQRNTHTQIQALLA---PLMFMQIGNPDTITAYSIEDNQLGVRQIFS 128 +G+++ + + + N ++ + LLA P + + +G PDTITA ++EDN+L R +FS Sbjct: 64 YAVGQISDSQEEEAESNKPSKNRELLAFWSPFLLLHLGGPDTITALALEDNELWDRHLFS 123
Query: 129 LVIQVSIMFYILIRSWTNSRTSFLYLPMSLAGIIKYAETSWALKSALNGNF--------- 188 LV Q Y+++ S N R L M + G+IKY E + AL SA F Sbjct: 124 LVCQAVATVYVILLSIPN-RLLTPTLIMFVGGVIKYVERTAALFSASLDKFKDSMLDDPD 183
Query: 189 -GFTIADFFKYHEVARLFD--------KLPQ----------GENELPEAKLILRAYYRFC 248 G A + +E + + K P+ +NEL ++I AY F Sbjct: 184 PGANYAKLMEEYEARKKMNMPTDVIVVKDPEKGREGNTPVRPDNELTALQVIQYAYKYFN 243
Query: 249 CLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAPVVYTRKGL 308 K + + L + + + + + D E+ RI + ELG +YD L+TKA +++ G Sbjct: 244 IFKGLIVD-LIFTNQERDESRKFFDKLTAEEALRIIEVELGLIYDCLFTKAEILHNWTGA 303
Query: 309 ILRCISLLSLIATLVGFSVLFKDAFVYNISVGFIHFVLIASLIIEVYQILRLPYTDWAII 368 + R I+L L+A+L F + KD + V + +LI + ++ +L +DW I Sbjct: 304 VFRFIALGCLVASLCLFKMNKKDQY-DGFDVVLTYALLICGIALDSIALLMFCVSDWTIA 363
Query: 369 QMIRHYE-----------TFPFLMGFL-------------QSLAPQSATWRRWSNTMGQF 428 ++ + E +++ F + ++ +RRWS + + Sbjct: 364 RLRKLKEDLEEKDTLTDRVLNWILDFKTLRWKRSKCSQDGHQVLNRNFMFRRWSEYVHAY 423
Query: 429 NLLDFCL--QTKHRNYSRIKILRYWGMDMKLRKQLSLD---------------------- 488 NL+ FCL + K +Y++ KI ++ + + LS+D Sbjct: 424 NLIGFCLGIRPKRIHYTKGKIHSFFHQTVHI---LSIDTAIENATRGTRQFHNWIGRFLS 483
Query: 489 --------------------------------------------RIDVDPKVK----ELV 548 R V ++ E + Sbjct: 484 NLSKRDNSVIRTGLRWFLFFPQLLGLLIYNFLDFFGIKDLVEEIRFTVSDRLTRELWEFI 543
Query: 549 VAELREIDKIKGQEE-----FDQRGQWTIGRYREKLKLNDVIQA-LETTVAKRPFDKSIF 608 E+++ + +E RG WT+ K K + L V ++ +D+SI Sbjct: 544 FTEVQQKHRFAEDQESAKGISSARGNWTLLETSSKKKEDGTDHTKLLQYVTEKDYDQSIL 603
Query: 609 IWHITTNIFYHIQSFHDTTDTTKMEAIMN--------------ISDYMMYLLVTRSHVLS 650 +WHI T + Y Q D T K E N +SDYMMYLL+ + ++S Sbjct: 604 LWHIATELLY--QKPIDKKVTEKEEHSTNREKEEHSNREFSKILSDYMMYLLIVQPTLMS 663
BLAST of CmaCh12G008390 vs. TAIR 10
Match: AT5G45470.1 (Protein of unknown function (DUF594) ) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-38 Identity = 200/859 (23.28%), Postives = 326/859 (37.95%), Query Frame = 0 Query: 8 KIIPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLA---A 67 ++IP+ I +W W I V+ + Q IL R+ TP L + VW SYLLA A Sbjct: 3 EVIPKHIKDVWDRWNIRGAVILSLTLQAILICFSPLRKRTPRRLLIVLVWSSYLLADWSA 62
Query: 68 KLATVVLGKLTTIEIGKDQRNTHTQIQALLAPLMFMQIGNPDTITAYSIEDNQLGVRQIF 127 A ++ K ++ D ++ AL AP + + +G PDTITA+++EDN L +R +F Sbjct: 63 NFAVGLISKNQGKDLKPDDPPQDKKVMALWAPFLLLHLGGPDTITAFALEDNALWLRHVF 122
Query: 128 SLVIQVSIMFYILIRSWTNSRTSFLYLPMSLAGIIKYAETSWALKSALNGNFGFT----- 187 LV Q Y+++ S NS + L + ++G IKY E + AL SA F + Sbjct: 123 GLVFQAIAGVYVVVMSLPNSLWVVIVL-VFVSGTIKYLERTTALYSASLDKFRDSMIQAP 182
Query: 188 --------IADFFKYHEVARLFDKL-----PQGEN-----------------ELPEAKLI 247 + + +K + ARL K+ P EN +L + +++ Sbjct: 183 DPGPNYAKLMEEYKAKKEARLPTKIVLIDEPDKENRPKKLEHPALASKKRKKDLTDLEIV 242
Query: 248 LRAYYRFCCLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAP 307 AY F K + N ++ E +++ + D E+ RI + ELGF+YDAL+TK Sbjct: 243 QYAYKFFNTFKGLVVNLIFSFRERDESLEIFENLNDPEEALRIIEIELGFLYDALFTKIA 302
Query: 308 VVYTRKGLILRCISLLSLIATLVGF-SVLFKDAFVYNISVGFIHFVLIASLIIEVYQILR 367 +++T G + R + +L+A + F K + V + + L+++ IL Sbjct: 303 ILHTGIGTVSRVFASGTLVAAFIIFHKKPNKGTDFHGADVVVTYTLFAVGLVLDFISILL 362
Query: 368 LPYTDWAIIQMIRHYETFPFLMGFLQSLAPQSATW------------------------- 427 ++DW Y + LQS + W Sbjct: 363 FLFSDWTCAA----YSSLKDDPDELQSWQERCFNWLLKFRKLRWTPQECHKTGMHKCTKE 422
Query: 428 ----------------------------------------------------RRWSNTMG 487 RRWS ++ Sbjct: 423 GLKPCIMKGADKKEGGNKNEGGNKKEGDDKKEAADKCSLVDKHDVLTTRFFLRRWSGSIN 482
Query: 488 QFNLLDFCLQT----------KHRNYS-----------RIKILRYWGMDMKL-------- 547 FN + + + R YS I + +G +KL Sbjct: 483 VFNFIAYATKADVERIHDARGSFRRYSWKIITFPFKKLNFVIKKIFGSIVKLINEVHRRI 542
Query: 548 --------RKQL------------------------------------SLDRIDV----- 607 RK L +LD + Sbjct: 543 SHEVNALSRKHLWARRFLYPIYFEFISRIPHFIKSVWDILSEFFDISDTLDMVHKTLFVH 602
Query: 608 -DPKVKEL---VVAELREIDKIKGQEEFDQ-----RGQWTIGRYREKLKLNDVIQALETT 650 +P +EL + EL+ K E + RG+WT+ RE L ++ + L Sbjct: 603 GEPMTRELWKFIFEELKNKSKYGDSPENAKRISLARGEWTL---RENLPVDAEREKLVRY 662
BLAST of CmaCh12G008390 vs. TAIR 10
Match: AT5G45530.1 (Protein of unknown function (DUF594) ) HSP 1 Score: 158.3 bits (399), Expect = 2.1e-38 Identity = 186/794 (23.43%), Postives = 323/794 (40.68%), Query Frame = 0 Query: 8 KIIPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLAAKLA 67 ++IP I + W I LV+ + +FQ L F R+ T L+ +W +YLLA A Sbjct: 2 QVIPPAIKKILDKWNIRGLVIMSLLFQTSLIFLAPMRKRTSKKLLAAVLWTAYLLADWTA 61
Query: 68 TVVLGKLT-----TIEIGKDQRNTHTQIQALLAPLMFMQIGNPDTITAYSIEDNQLGVRQ 127 + ++T E G +N ++ AL AP + + +G PDTITA ++EDN L R Sbjct: 62 NYAVSQITKNQGKETEPGDPPKN--KKLLALWAPFLLLHLGGPDTITALALEDNALWQRH 121
Query: 128 IFSLVIQVSIMFYILIRSWTNSRTSFLYLPMSL---AGIIKYAETSWALKSALNGNFGFT 187 +F LV Q Y +++S N L+ P++L G IKY E + AL SA F Sbjct: 122 LFGLVSQALAGVYAVVQSLEN----VLWPPITLLFITGTIKYVERTRALYSASLDKFKDR 181
Query: 188 I-------ADFFKYHE--VARLFDKLP-------------------QGENELPEAKLILR 247 + +++ K E +R LP + + +L + +++ Sbjct: 182 MLQRADAGSNYAKLMEEFASRKMSNLPTEIFLTDEPDKHERPPTLVKPDRDLTDLEIVQY 241
Query: 248 AYYRFCCLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAPVV 307 + F K + + L + + + + + + + RI ++ELGF+Y+++YTK ++ Sbjct: 242 GFKFFNTFKGLVVD-LIFSFRERDESRDFFKELKPGEALRIIETELGFLYESMYTKTAIL 301
Query: 308 YTRKGLILRCISLLSLIATLVGFSVL-FKDAFVYNISVGFIHFVLIASLIIEVYQILRLP 367 +T G + R IS SL+++ F K + V + + I + +++ ++ Sbjct: 302 HTGIGTLFRLISFGSLLSSFFVFHRRPLKSEDFHGADVVITYVLFIVGIALDLASMVIFL 361
Query: 368 YTDWAIIQMIRHYETFP---------FLMGFLQSLAPQ-----------------SATWR 427 +DW ++R+ + P FL+ P+ R Sbjct: 362 LSDWT-FAVLRNLKDDPEEKSTSIDSLFNWFLEFRKPRWKKHTCNGNQTHEVLSTGFFTR 421
Query: 428 RWSNTMGQFNLLDFCLQTK------HRNYS----------------RIKILRYW--GMDM 487 RWS T+ FN + FCL+ K RN + RI+++ W ++ Sbjct: 422 RWSGTIYGFNFIGFCLKAKVSRIHQKRNCNLLVWDYVVSLFDLVIRRIQMMIGWIKNVNR 481
Query: 488 KLRKQLS----------------------------------LDR-------------IDV 547 +R L +DR I Sbjct: 482 SIRSVLRQWSKKNPMIRCTVYPLYLVFFAGIPEVFRVLWKYIDRIFSVTSYLDGIRFISR 541
Query: 548 DPKVK---ELVVAELREIDKIKGQEEFDQRGQWTIGRYREKLKLNDVIQALETTVAKRPF 607 +P K E + E+++ E ++ W G + + + L + K + Sbjct: 542 EPLTKNQWEFIFNEVKDKSGFAETPEVAKKVSWARGEWALRDSKLMEVDTLMRYIEKVDY 601
Query: 608 DKSIFIWHITTNIFYHIQSFHDTTDTTKMEAIMN-----------ISDYMMYLLVTRSHV 650 D+S+ +WHI T + + + + KME + ISDYMMYLL+ R + Sbjct: 602 DQSLLLWHIATELCFQKE------EGGKMEKLSREGYDDREFSKIISDYMMYLLIMRPKL 661
BLAST of CmaCh12G008390 vs. TAIR 10
Match: AT5G45480.1 (Protein of unknown function (DUF594) ) HSP 1 Score: 131.7 bits (330), Expect = 2.2e-30 Identity = 182/861 (21.14%), Postives = 315/861 (36.59%), Query Frame = 0 Query: 10 IPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLAAKLATV 69 IP+ I +W W I ++ + Q L F +R+ + L +W +YLLA A Sbjct: 5 IPKPIKDIWDEWSIRSTLIFSLSLQTFLIFFAPQRKRSSRKVLLSFIWSAYLLADWSANF 64
Query: 70 VLGKLTTIEIGKD----QRNTHTQIQALLAPLMFMQIGNPDTITAYSIEDNQLGVRQIFS 129 G+++ + G D + ++ A P + + +G PDTITA ++EDN+L +R + Sbjct: 65 AAGQISDSQ-GDDPEPGEPKKSAELFAFWVPFLLLHLGGPDTITALALEDNELWLRHLLG 124
Query: 130 LVIQVSIMFYILIRSWTNSRTSFLYLPMSL---AGIIKYAETSWALKSALNGNFGFTI-- 189 L Q Y+L++S N+ L+ P+ L G+IKY E + AL A F ++ Sbjct: 125 LFFQSVATVYVLLQSLPNA----LWKPILLVFATGVIKYVERTLALYLASLDKFKDSMIQ 184
Query: 190 -----ADFFKYHE--VARLFDKLPQ-----GENE--------------LPEAKLILRAYY 249 ++ K E A+ K+P GE E ++ AY Sbjct: 185 RPDPGPNYAKLMEEYAAKKDMKMPTQIIKVGEPEKDPRDDAPVKPPDGFTPLNILQYAYK 244
Query: 250 RFCCLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAPVVYTR 309 F K + + ++ E K + D E+ RI + EL F+Y ALYTKA +++ Sbjct: 245 YFNIFKGLVVDLIFTFQQRAE-SKRFFDSLKAEEALRILEVELNFIYAALYTKAEILHNW 304
Query: 310 KGLILRCISLLSLIATLVGFSVLFKDAFVYNISVGFIHFVLIASLIIEVYQILRLPYTDW 369 G + R I+L L A L F K + VG + +L+ + ++ ++ +DW Sbjct: 305 IGFLFRFIALGCLAAALRIFQYKSKKDY-SGFDVGLTYALLLGGIALDCIALIMFCASDW 364
Query: 370 AIIQM--------------------------------IRHYE-----------------T 429 +++ + Y+ Sbjct: 365 TFVRLRKMKDEVDDPPTWSDNILNWILENILGVRKLKVEEYDECYKNTQSHEVPNTSTKK 424
Query: 430 FPFLMGFL---------------------------QSLAPQSA-------------TWRR 489 PFL L Q + +SA +RR Sbjct: 425 TPFLKRILNRILRVRELKTEKSHEVLDKSTSKIPGQEVPDKSAKTIPCHKVLDTSFMYRR 484
Query: 490 WSNTMGQFNLLDFCLQTKHRNYSRIKILRYWGMDMKLR------------------KQLS 549 WS + NL+++CL K + K + D + +++ Sbjct: 485 WSEYVHAHNLIEYCLGLKPKRIHHTKGFIHIAFDKVINILYIGPAFTKLGSVIESCFRVT 544
Query: 550 LDRID-----VDPKVKEL--------------------------------------VVAE 609 RI +D KV L + A+ Sbjct: 545 KQRIHQTFKWIDGKVSRLCKKYPKLNEEYIRFSFFCIFYIPSLPGRWIKSFMEFFGIRAQ 604
Query: 610 LREI-----------------DKIKGQEEF-----------DQRGQWTIGRYREKLKLND 650 L E+ ++K + F RG WT+ + + Sbjct: 605 LDEVIYTSSDRLTLDMWEHIFGEVKAKSRFADDSESAMRVSSARGDWTLRDIQGDPETEK 664
BLAST of CmaCh12G008390 vs. TAIR 10
Match: AT5G45460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 119.8 bits (299), Expect = 8.5e-27 Identity = 99/365 (27.12%), Postives = 167/365 (45.75%), Query Frame = 0 Query: 9 IIPRDISSLWSYWGIELLVLANFMFQIILTFNGCRRRHTPGYKLSLTVWFSYLLA---AK 68 +IP+ I W W I + + Q L R+ TP L + +W SYLLA A Sbjct: 4 VIPKHIKDAWDRWNIRGTIFLSLTLQAFLICFSPLRKRTPRRHLIIVIWSSYLLADWSAN 63
Query: 69 LATVVLGKLTTIEIGKDQRNTHTQIQALLAPLMFMQIGNPDTITAYSIEDNQLGVRQIFS 128 A ++ K ++ D ++ AL AP + + +G PDTITA+++EDN L +R +F Sbjct: 64 FAVGLISKNQGKDLKPDDPPQDKKLMALWAPFLLLHLGGPDTITAFALEDNALWLRNVFG 123
Query: 129 LVIQVSIMFYILIRSWTNSRTSFLYLPMSLAGIIKYAETSWALKSALNGNFGFT------ 188 LV Q Y++++S NS + L + ++G IKY E + AL SA F + Sbjct: 124 LVFQAIAGVYVVLQSLPNSLWVTILL-VFISGTIKYLERTTALYSASLDKFRDSMIQGPD 183
Query: 189 -------IADFFKYHEVARLFDKL-----PQGEN-----------------ELPEAKLIL 248 + + +K + A+L K+ P E+ EL ++ Sbjct: 184 PGPNYAKLMEEYKAKKEAKLPTKIILIDEPDKEHRPKKLEHPSLASETKRKELTHLEIAQ 243
Query: 249 RAYYRFCCLKPHLENWLYYPPTDCEYQKLYIDDCDYEDVFRITDSELGFMYDALYTKAPV 308 AY F K + N ++ + +++ + D E+ RI + ELGF+YDAL+TK V Sbjct: 244 YAYKFFNTFKGLVVNLIFSFRERDQSIEIFQNLEDPEEALRIIEIELGFLYDALFTKNAV 303
Query: 309 VYTRKGLILRCISLLSLIATLVGF-SVLFKDAFVYNISVGFIHFVLIASLIIEVYQILRL 335 ++T G + R ++ SL+A + F + K + V + + L+++ IL Sbjct: 304 LHTVLGTVSRVVASGSLVAAFIIFHKISNKGRDFHGADVVITYILFAVGLVLDFISILLF 363
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR025315 | Domain of unknown function DUF4220 | PFAM | PF13968 | DUF4220 | coord: 57..377 e-value: 5.4E-51 score: 174.0 |
IPR007658 | Protein of unknown function DUF594 | PFAM | PF04578 | DUF594 | coord: 601..649 e-value: 1.3E-18 score: 66.4 |
None | No IPR available | PANTHER | PTHR31325:SF221 | DUF594 FAMILY PROTEIN | coord: 36..642 |
None | No IPR available | PANTHER | PTHR31325 | OS01G0798800 PROTEIN-RELATED | coord: 36..642 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
|