CmaCh12G008320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UDP-glucuronate 4-epimerase 1-like
Location	Cma_Chr12: 6163137 .. 6164438 (+)
RNA-Seq Expression	CmaCh12G008320
Synteny	CmaCh12G008320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCCTTAGAAGACGACCCTTTCCCTTCCACCCCCGGCAAATTCAAGATCGACCACCGCAACCACCACCCGATGAACCGCCATTTCCACCGCTGCTTCTCTTCCACAAGCACCCTCTTCCTCTGGGCCCTCTTCTTAATCGCTTTAACTGCCTCCTATATAAGTTTCCAGTCATTCGTCGACTCCGGCAGCCGCTACTTAACCGCCTCTTGGGGCGGAATCCAATGGGAAAAACAACTCCGTAACTCCGCCCTTCCTCATCCTCCTTCTTCCCTTTCTGTCCTTGTCACCGGCGCCGCCGGTTTCGTCGGTACCCATGTCTCCCTCGCCCTGAAGAAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAACTCCTATTACGACCCGTCGTTGAAAAAAGCCCGGAAATCTCTCCTCTCCAACCATGGAATTTTCGTTGTGGAAGGCGATTTAAACGACGTCGGATTACTTCAAAAGCTCTTCGACGTCGTCGTTTTCACTCACGTTATGCACCTCGCGGCTCAAGCCGGAGTCCGTTACGCGATGGAGAATCCCAATTCGTATGTTCGGAGTAACATCGCCGGTTTGGTTAATCTCCTCGAGGTTTGTAAATCGGCGAACCCTCAACCGGCTGTGGTTTGGGCTTCATCGAGTTCGGTTTATGGGCTAAACGAAAAAGTCCCGTTTTCTGAATCGGACCGGACCGACCAACCCGCTAGTCTCTACGCAGCAACAAAGAAAGCCGGGGAAGAAATTACTCATACGTACAATCATATCTACGGTTTGTCAATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGACGGCCCGACATGGCGTACTTCTCATTTACGAGGAATATATTGCAAGGAAAACCGATTACGGTTTATCGGGGGAAGAACCGGGTTGATTTGGCGAGGGATTTTACATACATTGATGATATTGTAAAGGGGTGTTTGGGTTCGTTGGATACATCGGGGAAAAGCACCGGTTCGGGTGGGAAGAAAAAAAGGGCGGCGCCGTACAGAATATTTAACTTGGGGAATACGTCGCCGGTGACGGTGCCGACATTGGTGAGTATACTGGAGAAGCATTTGAAGGTGAAGGCGAAGAAGAAAGTGGTGGAGATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAGTTCGGCTCGGAGTCAGCTCGGGTATAAACCGACGACCGATTTGCAGACCGGGTTGAAGAAGTTCGTTAAATGGTATTTGTCTTATTATGGCTATAATCATGGCAAACCTGTAAATTAA

mRNA sequence

ATGCCCTCCTTAGAAGACGACCCTTTCCCTTCCACCCCCGGCAAATTCAAGATCGACCACCGCAACCACCACCCGATGAACCGCCATTTCCACCGCTGCTTCTCTTCCACAAGCACCCTCTTCCTCTGGGCCCTCTTCTTAATCGCTTTAACTGCCTCCTATATAAGTTTCCAGTCATTCGTCGACTCCGGCAGCCGCTACTTAACCGCCTCTTGGGGCGGAATCCAATGGGAAAAACAACTCCGTAACTCCGCCCTTCCTCATCCTCCTTCTTCCCTTTCTGTCCTTGTCACCGGCGCCGCCGGTTTCGTCGGTACCCATGTCTCCCTCGCCCTGAAGAAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAACTCCTATTACGACCCGTCGTTGAAAAAAGCCCGGAAATCTCTCCTCTCCAACCATGGAATTTTCGTTGTGGAAGGCGATTTAAACGACGTCGGATTACTTCAAAAGCTCTTCGACGTCGTCGTTTTCACTCACGTTATGCACCTCGCGGCTCAAGCCGGAGTCCGTTACGCGATGGAGAATCCCAATTCGTATGTTCGGAGTAACATCGCCGGTTTGGTTAATCTCCTCGAGGTTTGTAAATCGGCGAACCCTCAACCGGCTGTGGTTTGGGCTTCATCGAGTTCGGTTTATGGGCTAAACGAAAAAGTCCCGTTTTCTGAATCGGACCGGACCGACCAACCCGCTAGTCTCTACGCAGCAACAAAGAAAGCCGGGGAAGAAATTACTCATACGTACAATCATATCTACGGTTTGTCAATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGACGGCCCGACATGGCGTACTTCTCATTTACGAGGAATATATTGCAAGGAAAACCGATTACGGTTTATCGGGGGAAGAACCGGGTTGATTTGGCGAGGGATTTTACATACATTGATGATATTGTAAAGGGGTGTTTGGGTTCGTTGGATACATCGGGGAAAAGCACCGGTTCGGGTGGGAAGAAAAAAAGGGCGGCGCCGTACAGAATATTTAACTTGGGGAATACGTCGCCGGTGACGGTGCCGACATTGGTGAGTATACTGGAGAAGCATTTGAAGGTGAAGGCGAAGAAGAAAGTGGTGGAGATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAGTTCGGCTCGGAGTCAGCTCGGGTATAAACCGACGACCGATTTGCAGACCGGGTTGAAGAAGTTCGTTAAATGGTATTTGTCTTATTATGGCTATAATCATGGCAAACCTGTAAATTAA

Coding sequence (CDS)

ATGCCCTCCTTAGAAGACGACCCTTTCCCTTCCACCCCCGGCAAATTCAAGATCGACCACCGCAACCACCACCCGATGAACCGCCATTTCCACCGCTGCTTCTCTTCCACAAGCACCCTCTTCCTCTGGGCCCTCTTCTTAATCGCTTTAACTGCCTCCTATATAAGTTTCCAGTCATTCGTCGACTCCGGCAGCCGCTACTTAACCGCCTCTTGGGGCGGAATCCAATGGGAAAAACAACTCCGTAACTCCGCCCTTCCTCATCCTCCTTCTTCCCTTTCTGTCCTTGTCACCGGCGCCGCCGGTTTCGTCGGTACCCATGTCTCCCTCGCCCTGAAGAAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAACTCCTATTACGACCCGTCGTTGAAAAAAGCCCGGAAATCTCTCCTCTCCAACCATGGAATTTTCGTTGTGGAAGGCGATTTAAACGACGTCGGATTACTTCAAAAGCTCTTCGACGTCGTCGTTTTCACTCACGTTATGCACCTCGCGGCTCAAGCCGGAGTCCGTTACGCGATGGAGAATCCCAATTCGTATGTTCGGAGTAACATCGCCGGTTTGGTTAATCTCCTCGAGGTTTGTAAATCGGCGAACCCTCAACCGGCTGTGGTTTGGGCTTCATCGAGTTCGGTTTATGGGCTAAACGAAAAAGTCCCGTTTTCTGAATCGGACCGGACCGACCAACCCGCTAGTCTCTACGCAGCAACAAAGAAAGCCGGGGAAGAAATTACTCATACGTACAATCATATCTACGGTTTGTCAATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGACGGCCCGACATGGCGTACTTCTCATTTACGAGGAATATATTGCAAGGAAAACCGATTACGGTTTATCGGGGGAAGAACCGGGTTGATTTGGCGAGGGATTTTACATACATTGATGATATTGTAAAGGGGTGTTTGGGTTCGTTGGATACATCGGGGAAAAGCACCGGTTCGGGTGGGAAGAAAAAAAGGGCGGCGCCGTACAGAATATTTAACTTGGGGAATACGTCGCCGGTGACGGTGCCGACATTGGTGAGTATACTGGAGAAGCATTTGAAGGTGAAGGCGAAGAAGAAAGTGGTGGAGATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAGTTCGGCTCGGAGTCAGCTCGGGTATAAACCGACGACCGATTTGCAGACCGGGTTGAAGAAGTTCGTTAAATGGTATTTGTCTTATTATGGCTATAATCATGGCAAACCTGTAAATTAA

Protein sequence

MPSLEDDPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIALTASYISFQSFVDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAGVRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTVPTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKWYLSYYGYNHGKPVN

Homology

[Close]

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot
Match: Q9M0B6 (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 6.6e-219
Identity = 370/427 (86.65%), Postives = 396/427 (92.74%), Query Frame = 0


Query: 1   MPSLEDDPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIALTASYISFQSF 60
           MPS+ED+ FPSTPGKFKID       NR  HRCF+STST+FLWALFLIALTASY+SFQSF
Sbjct: 1   MPSIEDELFPSTPGKFKIDR-----SNRQLHRCFASTSTMFLWALFLIALTASYLSFQSF 60

Query: 61  VDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGVV 120
           VDSGSRYLTASWGGIQWEKQ+R SA  H    +SVLVTGA GFVG+HVSLAL+KRGDGVV
Sbjct: 61  VDSGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVV 120

Query: 121 GLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAGV 180
           GLDNFN+YYDPSLK+AR+SLLS+ GIFVVEGDLND  LL KLFDVV FTHVMHLAAQAGV
Sbjct: 121 GLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGV 180

Query: 181 RYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQP 240
           RYA+ENP SYV SNIAGLVNLLE+CK+ANPQPA+VWASSSSVYGLNEKVPFSESDRTDQP
Sbjct: 181 RYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQP 240

Query: 241 ASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV 300
           ASLYAATKKAGEEITHTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+
Sbjct: 241 ASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITI 300

Query: 301 YRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTVP 360
           YRGKNRVDLARDFTYIDDIVKGCLGSLD+SGKSTGSGGKK+ AAPYRIFNLGNTSPVTVP
Sbjct: 301 YRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVP 360

Query: 361 TLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKWY 420
            LV ILEKHLKVKAK+  VEMPGNGDVPFTHANISSAR++ GYKPTTDL+TGLKKFV+WY
Sbjct: 361 ILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWY 420

Query: 421 LSYYGYN 428
           LSYYGYN
Sbjct: 421 LSYYGYN 422

[Close]

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot
Match: Q9LPC1 (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 9.0e-168
Identity = 299/421 (71.02%), Postives = 344/421 (81.71%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWAL--FLIALTASYISFQSFVDSG 66
           D  PSTPGKFK+  ++  P   H  R  SS + L  W+L  F +     Y S  S  DS 
Sbjct: 5   DDIPSTPGKFKMMDKS--PFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSS 64

Query: 67  SRYL-TASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 126
            R L T SWGG  WEK++R+SA     + +SVLVTGAAGFVGTHVS ALK+RGDGV+GLD
Sbjct: 65  RRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 124

Query: 127 NFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAGVRYA 186
           NFN YYD SLK++R++LL   G+F+VEGD+ND+ LL+KLF+VV FTHVMHLAAQAGVRYA
Sbjct: 125 NFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYA 184

Query: 187 MENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 246
           MENP SYV SNIAG VNLLEVCKSANPQPA+VWASSSSVYGLN KVPFSE DRTDQPASL
Sbjct: 185 MENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 244

Query: 247 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 306
           YAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G
Sbjct: 245 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 304

Query: 307 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTVPTLV 366
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKK+ AA  R+FNLGNTSPV V  LV
Sbjct: 305 ANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 364

Query: 367 SILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKWYLSY 425
           SILE+ LKVKAK+ ++++P NGDVPFTHANISSA+ + GYKP+TDLQTGLKKFV+WYL Y
Sbjct: 365 SILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGY 423

[Close]

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot
Match: O81312 (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 2.2e-166
Identity = 300/431 (69.61%), Postives = 340/431 (78.89%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRC--FSSTSTLFLWALFLIALT-----ASYISFQS 66
           D  PSTPGKFK           +FHR    SS + L  W+L  + L       S +S   
Sbjct: 8   DDIPSTPGKFK----------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNP 67

Query: 67  FVDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGV 126
              S     T SWGG  WEK++R+SA        SVLVTGAAGFVGTHVS ALK+RGDGV
Sbjct: 68  ADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGV 127

Query: 127 VGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAG 186
           +GLDNFN YYDPSLK+AR++LL   G+FVVEGD+ND  LL+KLF+VV FTHVMHLAAQAG
Sbjct: 128 LGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAG 187

Query: 187 VRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQ 246
           VRYAMENP+SYV SNIAG VNLLEVCKSANPQPA+VWASSSSVYGLN KVPFSE DRTDQ
Sbjct: 188 VRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 247

Query: 247 PASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT 306
           PASLYAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+
Sbjct: 248 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAIS 307

Query: 307 VYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTV 366
           ++ G N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKK+ AA  R+FNLGNTSPV V
Sbjct: 308 IFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPV 367

Query: 367 PTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKW 426
             LV+ILE+ LKVKAK+ ++++P NGDV FTHANISSA+ +LGYKPTTDLQTGLKKF +W
Sbjct: 368 TDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARW 426

Query: 427 YLSYYGYNHGK 431
           YL Y  YN GK
Sbjct: 428 YLGY--YNGGK 426

[Close]

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot
Match: Q9STI6 (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 6.7e-163
Identity = 291/426 (68.31%), Postives = 339/426 (79.58%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIALTASYI--------SFQ 66
           D  PSTPGK+K D    + +  H HR +   S L LWA   +AL   Y+        S +
Sbjct: 5   DDLPSTPGKYKTDKVPPYGI-LHHHR-YLRLSKLTLWASLFLALFLFYLVLSPPPSPSRR 64

Query: 67  SFVDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDG 126
           +  DS S    A +GG  WEKQ+R SA P     L+VLVTGA+GFVGTHVS+AL++RGDG
Sbjct: 65  NLNDSSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDG 124

Query: 127 VVGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQA 186
           V+GLDNFN YYDP LK+AR+ LL   G+FVVEGD+ND  LL+KLFDVV+FTHVMHLAAQA
Sbjct: 125 VLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQA 184

Query: 187 GVRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTD 246
           GVRYAM+NP SYV SNIAG VNLLEV KSANPQPA+VWASSSSVYGLN KVPFSE DRTD
Sbjct: 185 GVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTD 244

Query: 247 QPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 306
           QPASLYAATKKAGE I HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I
Sbjct: 245 QPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTI 304

Query: 307 TVYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVT 366
           TV+   ++  +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKKK  A +RI+NLGNTSPV 
Sbjct: 305 TVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVP 364

Query: 367 VPTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVK 425
           V  LV+ILEK LK+KAKKK++ +P NGDV FTHANI+ A+++LGYKP  DL+TGLKKFVK
Sbjct: 365 VTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVK 424

[Close]

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot
Match: O22141 (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana OX=3702 GN=GAE4 PE=1 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 4.4e-162
Identity = 291/428 (67.99%), Postives = 342/428 (79.91%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIAL-------TASYISFQS 66
           D  PS+PGKFK++  ++     H  R  SS +    ++ FL+ L       +   I+  S
Sbjct: 5   DDIPSSPGKFKMEKSSY----LHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSS 64

Query: 67  FVDSGSRYL-TASWGGIQWEKQLRNSALPHPPSS--LSVLVTGAAGFVGTHVSLALKKRG 126
             D   R L T ++GG  WEK+LR+SA     ++  ++VLVTGAAGFVGTHVS ALK+RG
Sbjct: 65  PSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRG 124

Query: 127 DGVVGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAA 186
           DGV+GLDNFN YYDPSLK+AR++LL   GIF+VEGD+NDV LL+KLF +V FTHVMHLAA
Sbjct: 125 DGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAA 184

Query: 187 QAGVRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDR 246
           QAGVRYAMENP+SYV SNIAG VNLLE+CKS NPQPA+VWASSSSVYGLN KVPFSE D+
Sbjct: 185 QAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDK 244

Query: 247 TDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK 306
           TDQPASLYAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK
Sbjct: 245 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGK 304

Query: 307 PITVYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSP 366
            I+++   N   +ARDFTYIDDIVKGCL +LDT+ KSTGSGGKK+  A  R+FNLGNTSP
Sbjct: 305 SISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSP 364

Query: 367 VTVPTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKF 425
           V V  LV ILE+ LKVKAKK +++MP NGDVPFTHANIS A+ +LGYKPTTDLQTGLKKF
Sbjct: 365 VPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 424

[Close]

BLAST of CmaCh12G008320 vs. TAIR 10
Match: AT4G30440.1 (UDP-D-glucuronate 4-epimerase 1 )

HSP 1 Score: 761.1 bits (1964), Expect = 4.7e-220
Identity = 370/427 (86.65%), Postives = 396/427 (92.74%), Query Frame = 0


Query: 1   MPSLEDDPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIALTASYISFQSF 60
           MPS+ED+ FPSTPGKFKID       NR  HRCF+STST+FLWALFLIALTASY+SFQSF
Sbjct: 1   MPSIEDELFPSTPGKFKIDR-----SNRQLHRCFASTSTMFLWALFLIALTASYLSFQSF 60

Query: 61  VDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGVV 120
           VDSGSRYLTASWGGIQWEKQ+R SA  H    +SVLVTGA GFVG+HVSLAL+KRGDGVV
Sbjct: 61  VDSGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVV 120

Query: 121 GLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAGV 180
           GLDNFN+YYDPSLK+AR+SLLS+ GIFVVEGDLND  LL KLFDVV FTHVMHLAAQAGV
Sbjct: 121 GLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGV 180

Query: 181 RYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQP 240
           RYA+ENP SYV SNIAGLVNLLE+CK+ANPQPA+VWASSSSVYGLNEKVPFSESDRTDQP
Sbjct: 181 RYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQP 240

Query: 241 ASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV 300
           ASLYAATKKAGEEITHTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+
Sbjct: 241 ASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITI 300

Query: 301 YRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTVP 360
           YRGKNRVDLARDFTYIDDIVKGCLGSLD+SGKSTGSGGKK+ AAPYRIFNLGNTSPVTVP
Sbjct: 301 YRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVP 360

Query: 361 TLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKWY 420
            LV ILEKHLKVKAK+  VEMPGNGDVPFTHANISSAR++ GYKPTTDL+TGLKKFV+WY
Sbjct: 361 ILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWY 420

Query: 421 LSYYGYN 428
           LSYYGYN
Sbjct: 421 LSYYGYN 422

[Close]

BLAST of CmaCh12G008320 vs. TAIR 10
Match: AT1G02000.1 (UDP-D-glucuronate 4-epimerase 2 )

HSP 1 Score: 591.3 bits (1523), Expect = 6.4e-169
Identity = 299/421 (71.02%), Postives = 344/421 (81.71%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWAL--FLIALTASYISFQSFVDSG 66
           D  PSTPGKFK+  ++  P   H  R  SS + L  W+L  F +     Y S  S  DS 
Sbjct: 5   DDIPSTPGKFKMMDKS--PFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSS 64

Query: 67  SRYL-TASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 126
            R L T SWGG  WEK++R+SA     + +SVLVTGAAGFVGTHVS ALK+RGDGV+GLD
Sbjct: 65  RRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 124

Query: 127 NFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAGVRYA 186
           NFN YYD SLK++R++LL   G+F+VEGD+ND+ LL+KLF+VV FTHVMHLAAQAGVRYA
Sbjct: 125 NFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYA 184

Query: 187 MENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 246
           MENP SYV SNIAG VNLLEVCKSANPQPA+VWASSSSVYGLN KVPFSE DRTDQPASL
Sbjct: 185 MENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 244

Query: 247 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 306
           YAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G
Sbjct: 245 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 304

Query: 307 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTVPTLV 366
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKK+ AA  R+FNLGNTSPV V  LV
Sbjct: 305 ANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 364

Query: 367 SILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKWYLSY 425
           SILE+ LKVKAK+ ++++P NGDVPFTHANISSA+ + GYKP+TDLQTGLKKFV+WYL Y
Sbjct: 365 SILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGY 423

[Close]

BLAST of CmaCh12G008320 vs. TAIR 10
Match: AT4G00110.1 (UDP-D-glucuronate 4-epimerase 3 )

HSP 1 Score: 586.6 bits (1511), Expect = 1.6e-167
Identity = 300/431 (69.61%), Postives = 340/431 (78.89%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRC--FSSTSTLFLWALFLIALT-----ASYISFQS 66
           D  PSTPGKFK           +FHR    SS + L  W+L  + L       S +S   
Sbjct: 8   DDIPSTPGKFK----------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNP 67

Query: 67  FVDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDGV 126
              S     T SWGG  WEK++R+SA        SVLVTGAAGFVGTHVS ALK+RGDGV
Sbjct: 68  ADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGV 127

Query: 127 VGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQAG 186
           +GLDNFN YYDPSLK+AR++LL   G+FVVEGD+ND  LL+KLF+VV FTHVMHLAAQAG
Sbjct: 128 LGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAG 187

Query: 187 VRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQ 246
           VRYAMENP+SYV SNIAG VNLLEVCKSANPQPA+VWASSSSVYGLN KVPFSE DRTDQ
Sbjct: 188 VRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQ 247

Query: 247 PASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT 306
           PASLYAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+
Sbjct: 248 PASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAIS 307

Query: 307 VYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVTV 366
           ++ G N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKK+ AA  R+FNLGNTSPV V
Sbjct: 308 IFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPV 367

Query: 367 PTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVKW 426
             LV+ILE+ LKVKAK+ ++++P NGDV FTHANISSA+ +LGYKPTTDLQTGLKKF +W
Sbjct: 368 TDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARW 426

Query: 427 YLSYYGYNHGK 431
           YL Y  YN GK
Sbjct: 428 YLGY--YNGGK 426

[Close]

BLAST of CmaCh12G008320 vs. TAIR 10
Match: AT4G12250.1 (UDP-D-glucuronate 4-epimerase 5 )

HSP 1 Score: 575.1 bits (1481), Expect = 4.8e-164
Identity = 291/426 (68.31%), Postives = 339/426 (79.58%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIALTASYI--------SFQ 66
           D  PSTPGK+K D    + +  H HR +   S L LWA   +AL   Y+        S +
Sbjct: 5   DDLPSTPGKYKTDKVPPYGI-LHHHR-YLRLSKLTLWASLFLALFLFYLVLSPPPSPSRR 64

Query: 67  SFVDSGSRYLTASWGGIQWEKQLRNSALPHPPSSLSVLVTGAAGFVGTHVSLALKKRGDG 126
           +  DS S    A +GG  WEKQ+R SA P     L+VLVTGA+GFVGTHVS+AL++RGDG
Sbjct: 65  NLNDSSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDG 124

Query: 127 VVGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAAQA 186
           V+GLDNFN YYDP LK+AR+ LL   G+FVVEGD+ND  LL+KLFDVV+FTHVMHLAAQA
Sbjct: 125 VLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQA 184

Query: 187 GVRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDRTD 246
           GVRYAM+NP SYV SNIAG VNLLEV KSANPQPA+VWASSSSVYGLN KVPFSE DRTD
Sbjct: 185 GVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTD 244

Query: 247 QPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 306
           QPASLYAATKKAGE I HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I
Sbjct: 245 QPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTI 304

Query: 307 TVYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSPVT 366
           TV+   ++  +ARDFTYIDDIVKGCLG+LDT+ KSTGSGGKKK  A +RI+NLGNTSPV 
Sbjct: 305 TVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVP 364

Query: 367 VPTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKFVK 425
           V  LV+ILEK LK+KAKKK++ +P NGDV FTHANI+ A+++LGYKP  DL+TGLKKFVK
Sbjct: 365 VTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVK 424

[Close]

BLAST of CmaCh12G008320 vs. TAIR 10
Match: AT2G45310.1 (UDP-D-glucuronate 4-epimerase 4 )

HSP 1 Score: 572.4 bits (1474), Expect = 3.1e-163
Identity = 291/428 (67.99%), Postives = 342/428 (79.91%), Query Frame = 0


Query: 7   DPFPSTPGKFKIDHRNHHPMNRHFHRCFSSTSTLFLWALFLIAL-------TASYISFQS 66
           D  PS+PGKFK++  ++     H  R  SS +    ++ FL+ L       +   I+  S
Sbjct: 5   DDIPSSPGKFKMEKSSY----LHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSS 64

Query: 67  FVDSGSRYL-TASWGGIQWEKQLRNSALPHPPSS--LSVLVTGAAGFVGTHVSLALKKRG 126
             D   R L T ++GG  WEK+LR+SA     ++  ++VLVTGAAGFVGTHVS ALK+RG
Sbjct: 65  PSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRG 124

Query: 127 DGVVGLDNFNSYYDPSLKKARKSLLSNHGIFVVEGDLNDVGLLQKLFDVVVFTHVMHLAA 186
           DGV+GLDNFN YYDPSLK+AR++LL   GIF+VEGD+NDV LL+KLF +V FTHVMHLAA
Sbjct: 125 DGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAA 184

Query: 187 QAGVRYAMENPNSYVRSNIAGLVNLLEVCKSANPQPAVVWASSSSVYGLNEKVPFSESDR 246
           QAGVRYAMENP+SYV SNIAG VNLLE+CKS NPQPA+VWASSSSVYGLN KVPFSE D+
Sbjct: 185 QAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDK 244

Query: 247 TDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK 306
           TDQPASLYAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK
Sbjct: 245 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGK 304

Query: 307 PITVYRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKRAAPYRIFNLGNTSP 366
            I+++   N   +ARDFTYIDDIVKGCL +LDT+ KSTGSGGKK+  A  R+FNLGNTSP
Sbjct: 305 SISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSP 364

Query: 367 VTVPTLVSILEKHLKVKAKKKVVEMPGNGDVPFTHANISSARSQLGYKPTTDLQTGLKKF 425
           V V  LV ILE+ LKVKAKK +++MP NGDVPFTHANIS A+ +LGYKPTTDLQTGLKKF
Sbjct: 365 VPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKF 424

The following BLAST results are available for this feature:

BLAST of CmaCh12G008320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B6	6.6e-219	86.65	UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1	[more]
Q9LPC1	9.0e-168	71.02	UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1	[more]
O81312	2.2e-166	69.61	UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1	[more]
Q9STI6	6.7e-163	68.31	UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1	[more]
O22141	4.4e-162	67.99	UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana OX=3702 GN=GAE4 PE=1 SV=1	[more]

BLAST of CmaCh12G008320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30440.1	4.7e-220	86.65	UDP-D-glucuronate 4-epimerase 1	[more]
AT1G02000.1	6.4e-169	71.02	UDP-D-glucuronate 4-epimerase 2	[more]
AT4G00110.1	1.6e-167	69.61	UDP-D-glucuronate 4-epimerase 3	[more]
AT4G12250.1	4.8e-164	68.31	UDP-D-glucuronate 4-epimerase 5	[more]
AT2G45310.1	3.1e-163	67.99	UDP-D-glucuronate 4-epimerase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01713	NUCEPIMERASE	coord: 311..326 score: 68.98 coord: 386..403 score: 45.68 coord: 346..361 score: 48.84 coord: 121..137 score: 67.97
None	No IPR available	GENE3D	3.40.50.720		coord: 94..426 e-value: 1.8E-84 score: 285.6
None	No IPR available	PANTHER	PTHR43574:SF53	UDP-GLUCURONATE 5-EPIMERASE	coord: 3..431
None	No IPR available	PANTHER	PTHR43574	EPIMERASE-RELATED	coord: 3..431
IPR016040	NAD(P)-binding domain	PFAM	PF16363	GDP_Man_Dehyd	coord: 96..415 e-value: 8.9E-51 score: 173.3
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 93..424

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008320.1	CmaCh12G008320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016853	isomerase activity