CmaCh12G008190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CASP-like protein
Location	Cma_Chr12: 6000218 .. 6004784 (-)
RNA-Seq Expression	CmaCh12G008190
Synteny	CmaCh12G008190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAAGAAAGTAGTATTGTTCATAACAATCTGTATTTTTTAAAAATATAAAATTACGAACAGTTTTGCAATTAATTCCCAAACCAGTACCTTATTGATCGGCCATCGCCGCGCCGAACGTTCTTGGTCGCAAATTCAAGGATTTCAATCCTTCGCTCACGCCAGATTCCCAGAGACATCAACATAGATTTGATTTTCGCATGAGGCTTCTTGAGATTCTCGATTAGATTGAGATTCTTTACAGTGTCCGAGAAGGAGAGGTTCAGAGACCGACGGCATCGCTGATTCCGCCCGAAGCGGAGACGATGCGATTGGGTGAAAGATGATGAATTGAGGCATCGTCGTCGTGGAGAAATGAGTGTGAGCCATGCGACGGTTCATCCGGTCGAGGATCCCCCTACAACCGACGGCGAGGATGCGCCAAGGGTCAGGATGAAGGACATGGAAGGAATGCCTGGCACTCGCGGAGGACTCGCCTTGCGGTTCTCTCAGTTTATGTTTGCGGCAGCAGCTCTGGTTGTCATGGCTACTACCAGCGATTTCCCTTCCGTTCCTGCCTTTTGGTAAATCTCAATTTCCCTAAATTGAACCCTTCCCTCTGGATTTTGAATTTGTTTTATCGGTTTCTAGACTTTTCTTCTATATCTGTTGAATGAAAGGCTATTTGTTCTATCTGTAGCCTTTGGATCTACGATTGGTTGGTTTGCATCTTTTCGGGTCTACGGCAGAGAGAGTACTTCGAAGTAATTCGACTTGCTTTGGGAATTAGATTTAGTGTTGCAGTGAATTAGATTCATTTACTTTGTTTTAATTGACATTTTTACTTGGCTACGAAATTATGGTCGAACTTTCAGATAAGCTAAGGCCGAACTTTGCCAACGAGCAAGCGTTCTGTAACATGCATCGGTTGGTTGTTGTTGGTTCAATACGCTGAACATCCAATCGATGTCTATTAAAATTTAATGGCGAACTCAAGCGGAAGCTTTAGTATAGAAGCACTGTTAGGGATTACGACTCTCCACAATGTTATGATATTGTCCACTTTGAGCACAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAATGCCTCATACCAATGGAGATATATTCCTTATTTATAAACCTATGATCATCCTCTAAATAGCCAATGTGGGACTCCCTCCCAACAATCCTCCCCCCAAACAAAGTACACTATAGAGCCCTCAAACAGCCTTCCCTTAATTGAGCTCGATTCCTTTCTTTGGAGTCTTCGAACAAAGTACACCCTTTGTTTGACACTTGAGTCACATTTTTTACTACACCTTCGAGGCTCACAACTTCTTTGTTCGACATTTGAGGATCCTATTGACATGGCTAAGTTAAAGGCATGACTCTGGTACCATGTTAAGAATCACGACTCTCTACAATGGGATAATATTGTCCAGTTTAACACAAACTCTCATGACTTTGCTTTAGGCTTCCCCAAAAAGTCTCATACCAATGGAGATGTATTTCTTACTTATAACCCATGATCATCCTCAAATTAGCCAATGTAAACCCATGATCATCTTCTAAATTAGCCGATGTGGGACTCCCTCCCAACAATCCTCAACAAGCCCTTAGAGGACATAGTTGATATTCTTGTGAACTTTCTCTTCACCAACCATCAGTAATCATAGACCTGGATTAATTGGTTATGATGTGTGTCGTTGGAGCATTTACTGTTCCTATTTTTGGAGGTTGTGAGAAAGAACATAGGAATTATGAATTCCTGGACATATAAAGAATGTTGATAACTTGTTCTGATTGTTATTATGCATTATCGAGGTAATAGTCATTTCTAATGTGGCTGGTTCCAGGATCATTGGCAACAAATTAAGATTTATCTTTTTATCATTTATTTCATGTTTGAGTTCTTAGCACGTGTATCTAAATCTTATCCCGAGTCATTATGTGTTGCTGTTCCTTGAAACAATCAACCTTCTGCTATTTCAGCTATCTTGTTGCAGCAGCTGGTTTGCAAAGTTTGTGGAGCCTCTTGTTAGCCTCCATTGACATATATGCTCTGTTAGTGAGAAGATCACTACGGAATTGCAGGATAGTCAGCTTATTCACTATTGGTGATGGGGTATGTTTCTATTAAAAGGATCGAAGACTTTGATTTACGCATACTTTTCATCCATAGATTCACTCTTATGATCTTGAATACTCTGGATGCTGATTGCTGGATTGCTAGTTAGTTCCAGTCCATCTTTCTTGGACTGGAATAGTGGAAATAATGCGTTTTAATATACTAACTTTAATCCTGATGGTATTTCTCATAGGATTGTTACTAATCAATGAACTACTTGGTATGGTTAGAGAAAATCGATGCTGTTACTTTTATTTGAATTCTCTGTTTTAGTATGCAACGTGGTTTACTGTGATGAAATTCCCATTTGGTATTTGGATGCTGAGAGGAGTTTTGGACCCTTGTTAGGTTTAATGTTTCTCCTTAAGTTTCAATGGTTAAGGAGGCTTGTAATTGTTTCTTCGGTCTTATTTTGGTAAATTAATATTTTGCTTTTTTCCTTAATTCAACCATAAAAATGAAATAATAATTCCATTGTTGTATGCAGTCATCTCATATGATGACATTGAATACTCGGAGATCCCCTTAGAACTCCCATAATTTCTGCAACCATTCTCTTAGGACTAATAATCGATGCTGTACTCCTGACTTATTATCTGGAATTTTACTAGTCTAGCAGCTGACACTTGAATGTTTTCTCTTGCAGATCACATCTACTCTCACGTTTGCTGCGGCTTGTTCTTCTGCAGGCATTACAATCCTTATAGACAATGATCTAGATAGCTGCAGAGAGAACCACTGTGTACAGTTGGAAATCGCAACGGCAATGGCATTCATTAGTTGGTTTATTGCATTGCCTTCTTTCTTCATGAACTTCTGGTCTCTTGCATCCCGGTGAATTGGCTATGAAAAAGAAATATAGAAACTTGTAAGAGTATGATTTACCCTACTTGTAACAAGTGGGTATAATTTGCAACTGAGGGGATGAAATGGCTGATTTGATCTGGATTTTCGTTTAACACCATAATTATTGGAACACAGTCTGATGGTAATCGTATACAAACTGTTAAAACATTGTAAATTCGATGCAAGTTAGTTCCAGAAATGCAACATTTTCCATTCTTGTCACAACAAAAGAATTTGACATCATCAGAAATTTTCTCTGCCGGATACATCCTTATAATTCAAACCTGCGGCTGATGTATAGATAAGATGTTACAAAATTGTAGAACCCCCCATCCTATTTTCTTGGACTGTTACATAATTTTCAACAAGTGTACAGGGAAAAGAATCATAGGAACGACCAGTTGACGAAGGAGAAAGCAAGACAGTGCACGGTGGACTCGTCTTCTGCAAGAACCTTCCATGCAATGGCTTGTTCAAAGGAAGCATGGCGCCCCATTGTCGATATGCAAATTCCAGCAGGTATGTAAGCAAAGCCCTGGTCATAAACAAATAAAATTCAGTTAGTTTGCATTGTTATATCGCAAATCGACCTTGTAATAGCTAATCATCTCAAGTTTTCTTTATTTATGCAGTATAGTCACAACCAAGCATGGCTGACAATGAACTGAATGGGAGAATATATATAGTAGGTAACCTGGTGCATTAAATTGGAAAAATCAGCAGAGAAGGCCTTATGGGCCGAGTCGCCGAGAATCTTATCCAAAGTGATGTCTTGCAACGCAACCAAGGTCGTCTCCAACATGTCGAGGCCTGCTTGGTTTGCAAACATGAACACTGGGGGCAGTGACTGCAGCCATTCAACGCATTGCTTAGGAGACAACCACATAACATGGTTAAAAATGTTCTTTTTCTTTTTCTTTTTTGTTTCTTACCTTGAGGGAACAACAGAGAATTGCATCCTGATGATTCCATAGGTGTTTCAACACTGAGTCACCACCATCCACACTGTCTGATAGCACCAATTCTGTTCCAGTATGGCATCTGTGTGACAGAAGGAGATAGACACTCAATTTTCTATTTTGACGGTTTATTACATTGAATTCGAAGTATAATTTTCTTTTATAGGTTGGGAAAGAGAGAACCTGTAGCTATAGCAGATCCATCGAGCCAGGGTAAGAGCTTCTGGACAAGCAGATGATAGCCTTCGTTCCGATGGCAAGCTTAATCCAGAGGGAGACATGGCAACTGCAACCCTCTGCACAGCTGAAACGACACTCCGAACGTACTGCCTTGCCATCGCCGCAACATCATCCTGTAGGTTGCTACCAAACGAGAACTGGAAGGCAATAGTCAAAACTGATCTGAAGTTAGATGTTGATGCAGCAGCAGCATCTTGTGAAGCAGATGAACCAACTTCAAGATTGGAAGTGAGATCCATAGTGCTATTCAAGTTCTTCCATGTATGTTTTGAGTCACCCTGGATGATTCAACCAAACAAAAGCATGTTGGTTAAAAGTTCACTCATGTGAAAGACATATCGAGTCAATTACAATGTTTTTTGCAAGGAAAATGTCCTCGTAAGACATATAATCGACCAAGAGATCGAGAG

mRNA sequence

TATGAAGAAAGTAGTATTGTTCATAACAATCTGTATTTTTTAAAAATATAAAATTACGAACAGTTTTGCAATTAATTCCCAAACCAGTACCTTATTGATCGGCCATCGCCGCGCCGAACGTTCTTGGTCGCAAATTCAAGGATTTCAATCCTTCGCTCACGCCAGATTCCCAGAGACATCAACATAGATTTGATTTTCGCATGAGGCTTCTTGAGATTCTCGATTAGATTGAGATTCTTTACAGTGTCCGAGAAGGAGAGGTTCAGAGACCGACGGCATCGCTGATTCCGCCCGAAGCGGAGACGATGCGATTGGGTGAAAGATGATGAATTGAGGCATCGTCGTCGTGGAGAAATGAGTGTGAGCCATGCGACGGTTCATCCGGTCGAGGATCCCCCTACAACCGACGGCGAGGATGCGCCAAGGGTCAGGATGAAGGACATGGAAGGAATGCCTGGCACTCGCGGAGGACTCGCCTTGCGGTTCTCTCAGTTTATGTTTGCGGCAGCAGCTCTGGTTGTCATGGCTACTACCAGCGATTTCCCTTCCGTTCCTGCCTTTTGCTATCTTGTTGCAGCAGCTGGTTTGCAAAGTTTGTGGAGCCTCTTGTTAGCCTCCATTGACATATATGCTCTGTTAGTGAGAAGATCACTACGGAATTGCAGGATAGTCAGCTTATTCACTATTGGTGATGGGATCACATCTACTCTCACGTTTGCTGCGGCTTGTTCTTCTGCAGGCATTACAATCCTTATAGACAATGATCTAGATAGCTGCAGAGAGAACCACTGTGTACAGTTGGAAATCGCAACGGCAATGGCATTCATTAGTTGGTTTATTGCATTGCCTTCTTTCTTCATGAACTTCTGGTCTCTTGCATCCCGGTGAATTGGCTATGAAAAAGAAATATAGAAACTTGTAAGAGTATGATTTACCCTACTTGTAACAAGTGGGTATAATTTGCAACTGAGGGGATGAAATGGCTGATTTGATCTGGATTTTCGTTTAACACCATAATTATTGGAACACAGTCTGATGGTAATCGTATACAAACTGTTAAAACATTGTAAATTCGATGCAAGTTAGTTCCAGAAATGCAACATTTTCCATTCTTGTCACAACAAAAGAATTTGACATCATCAGAAATTTTCTCTGCCGGATACATCCTTATAATTCAAACCTGCGGCTGATGTATAGATAAGATGTTACAAAATTGTAGAACCCCCCATCCTATTTTCTTGGACTGTTACATAATTTTCAACAAGTGTACAGGGAAAAGAATCATAGGAACGACCAGTTGACGAAGGAGAAAGCAAGACAGTGCACGGTGGACTCGTCTTCTGCAAGAACCTTCCATGCAATGGCTTGTTCAAAGGAAGCATGGCGCCCCATTGTCGATATGCAAATTCCAGCAGTATAGTCACAACCAAGCATGGCTGACAATGAACTGAATGGGAGAATATATATAGTAGGTAACCTGGTGCATTAAATTGGAAAAATCAGCAGAGAAGGCCTTATGGGCCGAGTCGCCGAGAATCTTATCCAAAGTGATGTCTTGCAACGCAACCAAGGTCGTCTCCAACATGTCGAGGCCTGCTTGGTTTGCAAACATGAACACTGGGGGCAGTGACTGCAGCCATTCAACGCATTGCTTAGGAGACAACCACATAACATGGTTGGGAAAGAGAGAACCTGTAGCTATAGCAGATCCATCGAGCCAGGGTAAGAGCTTCTGGACAAGCAGATGATAGCCTTCGTTCCGATGGCAAGCTTAATCCAGAGGGAGACATGGCAACTGCAACCCTCTGCACAGCTGAAACGACACTCCGAACGTACTGCCTTGCCATCGCCGCAACATCATCCTGTAGGTTGCTACCAAACGAGAACTGGAAGGCAATAGTCAAAACTGATCTGAAGTTAGATGTTGATGCAGCAGCAGCATCTTGTGAAGCAGATGAACCAACTTCAAGATTGGAAGTGAGATCCATAGTGCTATTCAAGTTCTTCCATGTATGTTTTGAGTCACCCTGGATGATTCAACCAAACAAAAGCATGTTGGTTAAAAGTTCACTCATGTGAAAGACATATCGAGTCAATTACAATGTTTTTTGCAAGGAAAATGTCCTCGTAAGACATATAATCGACCAAGAGATCGAGAG

Coding sequence (CDS)

ATGAGTGTGAGCCATGCGACGGTTCATCCGGTCGAGGATCCCCCTACAACCGACGGCGAGGATGCGCCAAGGGTCAGGATGAAGGACATGGAAGGAATGCCTGGCACTCGCGGAGGACTCGCCTTGCGGTTCTCTCAGTTTATGTTTGCGGCAGCAGCTCTGGTTGTCATGGCTACTACCAGCGATTTCCCTTCCGTTCCTGCCTTTTGCTATCTTGTTGCAGCAGCTGGTTTGCAAAGTTTGTGGAGCCTCTTGTTAGCCTCCATTGACATATATGCTCTGTTAGTGAGAAGATCACTACGGAATTGCAGGATAGTCAGCTTATTCACTATTGGTGATGGGATCACATCTACTCTCACGTTTGCTGCGGCTTGTTCTTCTGCAGGCATTACAATCCTTATAGACAATGATCTAGATAGCTGCAGAGAGAACCACTGTGTACAGTTGGAAATCGCAACGGCAATGGCATTCATTAGTTGGTTTATTGCATTGCCTTCTTTCTTCATGAACTTCTGGTCTCTTGCATCCCGGTGA

Protein sequence

MSVSHATVHPVEDPPTTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMATTSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLTFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR

Homology

[Close]

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot
Match: Q9SKN3 (CASP-like protein 5A2 OS=Arabidopsis thaliana OX=3702 GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.5e-71
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPP--TTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMA 60
           M+VSHA+VHPVEDPP   T+ E+ PRVRM DMEGMPGT  GLALRF QF+FAAAAL VMA
Sbjct: 1   MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query: 61  TTSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITST 120
           +TSDFPSV AFCYLVAA GLQSLWSL LA +D+YA++V+RSL+N R+VSLF IGDG+TST
Sbjct: 61  STSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTST 120

Query: 121 LTFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR 178
           LTFAAAC+SAGIT+LIDNDL+SC +NHCVQ E +TA+AFISWF ALPSF  NFWSLASR
Sbjct: 121 LTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLASR 179

[Close]

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot
Match: Q10Q78 (CASP-like protein 5A1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0206600 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.3e-58
Identity = 118/177 (66.67%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPPTTDGEDAPR-VRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMAT 60
           M  S   VHPVE PP  D  + PR V MKD+ GMPGT GGL LR +QF FAA AL VMA+
Sbjct: 1   MFASRPAVHPVEAPPPPDPAEQPRGVLMKDLPGMPGTAGGLGLRLAQFAFAAVALAVMAS 60

Query: 61  TSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITSTL 120
           T+DFPSV +FC+LVAAA LQ LWS  LA +DIYALLV+R LRN R V LF IGDGIT+ L
Sbjct: 61  TNDFPSVTSFCFLVAAAILQCLWSFSLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAAL 120

Query: 121 TFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLAS 177
           TF+AAC+S+GIT+LIDNDLD C ENHC   E ATAMAF+SWF   PSF +NFWS+AS
Sbjct: 121 TFSAACASSGITVLIDNDLDLCSENHCASFESATAMAFLSWFALSPSFLLNFWSMAS 177

[Close]

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot
Match: P0DI70 (CASP-like protein 5A1 OS=Ginkgo biloba OX=3311 GN=gba_locus_10451 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-58
Identity = 118/177 (66.67%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPPTTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMATT 60
           M+ SH  VHPVE PP TD   APRVRMKD +GMPGT GGLALR  QF FA  A  +M +T
Sbjct: 1   MNPSHPAVHPVEAPP-TDVHHAPRVRMKDYQGMPGTLGGLALRLGQFCFAVVAFSIMLST 60

Query: 61  SDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLT 120
            DF +V AFCYLVAA  LQ LWSL LA ID YALLV+RSLRN  +VSLF +GDG+T+TLT
Sbjct: 61  DDFSTVTAFCYLVAATVLQCLWSLALAVIDGYALLVKRSLRNSLVVSLFVVGDGVTATLT 120

Query: 121 FAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR 178
           FAAAC+SAGIT+LI NDL  C +NHC + E ATAMAF+SWF+  PSF + FW LASR
Sbjct: 121 FAAACASAGITVLIGNDLRECDQNHCGKYETATAMAFLSWFMVSPSFLLTFWLLASR 176

[Close]

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot
Match: P0DI68 (CASP-like protein 5A1 OS=Brachypodium distachyon OX=15368 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-57
Identity = 117/178 (65.73%), Postives = 134/178 (75.28%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPPTTDGEDAPR-VRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMAT 60
           M  S   VHPVE PP TD  + P  V MKD+ GMPGT GGL LR +QF+FA  AL VMA+
Sbjct: 1   MFASRPAVHPVEAPPPTDPVEQPTGVLMKDLPGMPGTAGGLGLRVAQFVFAGVALAVMAS 60

Query: 61  TSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITSTL 120
           TSDFPSV AFCYLVAA  +Q LWS  LA +DIYALLV+R LRN R V LF IGDGIT+ L
Sbjct: 61  TSDFPSVTAFCYLVAATIMQCLWSFSLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAAL 120

Query: 121 TFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR 178
           TF AACSSAGIT+LIDNDL+ C ENHC   + ATA+AF+SWF   PSF +NFWS+A+R
Sbjct: 121 TFGAACSSAGITVLIDNDLNICAENHCGSFKTATALAFMSWFALTPSFLLNFWSMAAR 178

[Close]

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot
Match: P0DI69 (CASP-like protein 5A2 OS=Ginkgo biloba OX=3311 GN=gba_locus_19756 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-53
Identity = 107/177 (60.45%), Postives = 131/177 (74.01%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPPTTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMATT 60
           M+ SH  VHPV  PP   G+  PR+RMK+++GMPGT GGL LR  QF FA  A  +M + 
Sbjct: 1   MNASHPAVHPVGVPPAVAGQLPPRMRMKEIQGMPGTIGGLLLRLGQFCFALVAFSIMVSI 60

Query: 61  SDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLT 120
            +F +V AFCYLVAA  LQ LWSL LA ID YALLV+RSLRN  +VSL  +GDG+T+TLT
Sbjct: 61  ENFSTVTAFCYLVAATVLQCLWSLALAIIDGYALLVKRSLRNSLLVSLLVVGDGVTATLT 120

Query: 121 FAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR 178
           FAAAC+SAGIT+LI NDL  C+ENHC + E ATA+AF+SWF+   SF + FW LA+R
Sbjct: 121 FAAACASAGITVLIGNDLRQCKENHCARYETATALAFLSWFMVSLSFILTFWLLATR 177

[Close]

BLAST of CmaCh12G008190 vs. TAIR 10
Match: AT2G28370.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 268.5 bits (685), Expect = 3.9e-72
Identity = 137/179 (76.54%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MSVSHATVHPVEDPP--TTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMA 60
           M+VSHA+VHPVEDPP   T+ E+ PRVRM DMEGMPGT  GLALRF QF+FAAAAL VMA
Sbjct: 1   MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query: 61  TTSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITST 120
           +TSDFPSV AFCYLVAA GLQSLWSL LA +D+YA++V+RSL+N R+VSLF IGDG+TST
Sbjct: 61  STSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTST 120

Query: 121 LTFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLASR 178
           LTFAAAC+SAGIT+LIDNDL+SC +NHCVQ E +TA+AFISWF ALPSF  NFWSLASR
Sbjct: 121 LTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLASR 179

[Close]

BLAST of CmaCh12G008190 vs. TAIR 10
Match: AT2G37200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 204.1 bits (518), Expect = 9.0e-53
Identity = 114/179 (63.69%), Postives = 129/179 (72.07%), Query Frame = 0


Query: 1   MSVSHATVHPVED---PPTTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVM 60
           M+VS   +HPV+     PT    D P VRMKD++GMPGT GGL LR SQF+ A  ++ VM
Sbjct: 2   MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVM 61

Query: 61  ATTSDFPSVPAFCYLVAAAGLQSLWSLLLASIDIYALLVRRSLRNCRIVSLFTIGDGITS 120
            TTSDF S  AFC LV A  LQSLWSL L  ID YALLVRRSLRN  +V  FTIGDG+TS
Sbjct: 62  VTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTS 121

Query: 121 TLTFAAACSSAGITILIDNDLDSCRENHCVQLEIATAMAFISWFIALPSFFMNFWSLAS 177
           TLTFAAA +SAGIT+LI NDL  C  NHC + E ATAMAFISWF   PSF +NFWSLA+
Sbjct: 122 TLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLAT 179

[Close]

BLAST of CmaCh12G008190 vs. TAIR 10
Match: AT5G02060.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-29
Identity = 68/151 (45.03%), Postives = 97/151 (64.24%), Query Frame = 0


Query: 27  MKDMEGMPGTRGGLALRFSQFMFAAAALVVMATTSDFPSVPAFCYLVAAAGLQSLWSLLL 86
           MK M G PGT  GL LR  Q   AAA++ VM ++ DF +  AFC+LVA+ GLQ +WS  L
Sbjct: 1   MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGL 60

Query: 87  ASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLTFAAACSSAGITILIDNDLDSCREN-- 146
           A +D+YA+  +  LR+  ++SLFT+GD +T+ L  AAACSSAG+T+L   D + CR+   
Sbjct: 61  ACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPA 120

Query: 147 -HCVQLEIATAMAFISWFIALPSFFMNFWSL 175
             C + +I+  ++F +WF+A  S    FW L
Sbjct: 121 LSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151

[Close]

BLAST of CmaCh12G008190 vs. TAIR 10
Match: AT3G53850.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-28
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 27  MKDMEGMPGTRGGLALRFSQFMFAAAALVVMATTSDFPSVPAFCYLVAAAGLQSLWSLLL 86
           MK + G PGT  GL LR  Q   AAA++ VM +  +F    AFCYL+A+ GLQ LWS  L
Sbjct: 1   MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGL 60

Query: 87  ASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLTFAAACSSAGITILIDNDLDSCR---E 146
           A +D+YAL  ++ L+N  +VSLF +GD +T+ L+ AAACSSAG+ +L + D+  C    +
Sbjct: 61  ACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQ 120

Query: 147 NHCVQLEIATAMAFISWFIALPSFFMNFWSLAS 177
             C++ E+A A++F++W     S  + FW LAS
Sbjct: 121 YPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153

[Close]

BLAST of CmaCh12G008190 vs. TAIR 10
Match: AT3G23200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-28
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 27  MKDMEGMPGTRGGLALRFSQFMFAAAALVVMATTSDFPSVPAFCYLVAAAGLQSLWSLLL 86
           M D+ G PGT  GL LR SQ +FAA ++  M T+  F S  AFCYL+AA GLQ +WS  L
Sbjct: 1   MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60

Query: 87  ASIDIYALLVRRSLRNCRIVSLFTIGDGITSTLTFAAACSSAGITILIDNDLDSCR-ENH 146
           A +D +AL+ +++L +  +VSLF +GD +TSTL+ A A SSAGIT+L   DL SC  E  
Sbjct: 61  AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE 120

Query: 147 CVQLEIATAMAFISWFIALPSFFMNFWSLAS 177
           C + +++ A+AF+ W     S     W LAS
Sbjct: 121 CWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151

The following BLAST results are available for this feature:

BLAST of CmaCh12G008190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKN3	5.5e-71	76.54	CASP-like protein 5A2 OS=Arabidopsis thaliana OX=3702 GN=At2g28370 PE=2 SV=1	[more]
Q10Q78	5.3e-58	66.67	CASP-like protein 5A1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0206600 P...	[more]
P0DI70	7.0e-58	66.67	CASP-like protein 5A1 OS=Ginkgo biloba OX=3311 GN=gba_locus_10451 PE=3 SV=1	[more]
P0DI68	2.6e-57	65.73	CASP-like protein 5A1 OS=Brachypodium distachyon OX=15368 PE=2 SV=1	[more]
P0DI69	2.3e-53	60.45	CASP-like protein 5A2 OS=Ginkgo biloba OX=3311 GN=gba_locus_19756 PE=2 SV=1	[more]

BLAST of CmaCh12G008190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28370.1	3.9e-72	76.54	Uncharacterised protein family (UPF0497)	[more]
AT2G37200.1	9.0e-53	63.69	Uncharacterised protein family (UPF0497)	[more]
AT5G02060.1	4.1e-29	45.03	Uncharacterised protein family (UPF0497)	[more]
AT3G53850.1	2.0e-28	44.44	Uncharacterised protein family (UPF0497)	[more]
AT3G23200.1	2.0e-28	47.02	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 34..161 e-value: 8.0E-27 score: 93.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR32021:SF16	CASP-LIKE PROTEIN 5A2	coord: 14..177
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 14..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008190.1	CmaCh12G008190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane