CmaCh12G008150 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G008150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function, DUF584
LocationCma_Chr12: 5960697 .. 5961185 (+)
RNA-Seq ExpressionCmaCh12G008150
SyntenyCmaCh12G008150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTGGTAAGAGCTACTCCTCCCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGCCGCAGTACTGGCTGCGGCGATTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGACGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTAGAGACGGAAGCGTAACGACAGCGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAAGGATCGATTTAGGATTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGAATTGGAAGAACGTTGAAAGGGAGAGATTTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

mRNA sequence

ATGGCGACTGGTAAGAGCTACTCCTCCCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGCCGCAGTACTGGCTGCGGCGATTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGACGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTAGAGACGGAAGCGTAACGACAGCGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAAGGATCGATTTAGGATTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGAATTGGAAGAACGTTGAAAGGGAGAGATTTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

Coding sequence (CDS)

ATGGCGACTGGTAAGAGCTACTCCTCCCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGCCGCAGTACTGGCTGCGGCGATTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGACGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTAGAGACGGAAGCGTAACGACAGCGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAAGGATCGATTTAGGATTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGAATTGGAAGAACGTTGAAAGGGAGAGATTTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

Protein sequence

MATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTRISKRISAKVVDARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDRFRIPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Homology
BLAST of CmaCh12G008150 vs. TAIR 10
Match: AT5G60680.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-35
Identity = 86/167 (51.50%), Postives = 110/167 (65.87%), Query Frame = 0

Query: 1   MATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTR-ISKR 60
           MATGKSY +R  +RFL  ++ P++  ++  G    E DESDLFN    D     R IS  
Sbjct: 1   MATGKSYYARPSYRFL-GTDQPSYFTASDSG---LEFDESDLFNPIHSDSPDFCRKISSS 60

Query: 61  I-SAKVVDARDGSVTTAAA---LPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDR 120
           + S K    R  + ++AAA   LPVN+PDWSKILR EY +NRR   E+  +  D+ E   
Sbjct: 61  VRSGKKSSNRPSAASSAAAASSLPVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDGG 120

Query: 121 FRIPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 163
             +PPHEF+A+TRMASFSV EG+GRTLKGRDLSRVR+AI+ K GF+D
Sbjct: 121 DWLPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGFQD 163

BLAST of CmaCh12G008150 vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 75/161 (46.58%), Postives = 93/161 (57.76%), Query Frame = 0

Query: 2   ATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTRISKRIS 61
           AT KSY  R   RFLP     N       GD  FE DESDL+ S R D     R     +
Sbjct: 4   ATRKSYYQRPSHRFLPTDRTYN-----VTGDSEFEFDESDLY-SNRSDSPEFRRKLITSN 63

Query: 62  AKVVDARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDRFRIPPH 121
            K   A   + T A++LP+N+ +WSKIL  E     R   E + + G+       ++PPH
Sbjct: 64  RKSSPATVTTTTVASSLPMNVQNWSKILGKE----NRKSIENDDDGGEG------KLPPH 123

Query: 122 EFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 163
           E++A+TRMASFSV EGIGRTLKGRD+SRVR+AI  KTGF D
Sbjct: 124 EYLAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

BLAST of CmaCh12G008150 vs. TAIR 10
Match: AT2G28400.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 73/170 (42.94%), Postives = 93/170 (54.71%), Query Frame = 0

Query: 1   MATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTRISKRI 60
           MAT K Y  R   RF    +       T   D  FE+DE DLFN+      S +     I
Sbjct: 1   MATSKCYYPRPSHRFFTTDQ-----HVTATSD--FELDEWDLFNTGSDSSSSFSFSDLTI 60

Query: 61  SA------KVVDARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDEL--E 120
           ++      + +     S   A++LPVN+PDWSKIL +E    R+   EEE + GDE+   
Sbjct: 61  TSGRTGTNRQIHGGSDSGKAASSLPVNVPDWSKILGDESRRQRKISNEEEVD-GDEILCG 120

Query: 121 KDRFRIPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 163
           +   R+PPHE +A  RMASFSV EG GRTLKGRDLSRVR+ I+   G ED
Sbjct: 121 EGTRRVPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED 162

BLAST of CmaCh12G008150 vs. TAIR 10
Match: AT5G03230.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-24
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 0

Query: 34  VFEIDESDL-----------FNSPRGDGVSKTRISKRISAKVVDARDGSVTTAAALPVNI 93
           VFE DESD+           F++ R   +S+ R   R   K  D+ +  +T   +LPVNI
Sbjct: 27  VFEFDESDIHNLGDHQLPNSFDAKRSISISRLR---RKPTKTGDSGNREITKTGSLPVNI 86

Query: 94  PDWSKILRNEYIENR---RDRFEEEANCGDELEKDRFRIPPHEFVARTRMASFSVEEGIG 153
           PDWSKIL++EY  +     D  +++ +  D  +  R  IPPHE++AR R +SF+V EGIG
Sbjct: 87  PDWSKILKSEYRGHAIPDDDSDDDDEDDDDSNDGGRRMIPPHEYLARRRGSSFTVHEGIG 146

Query: 154 RTLKGRDLSRVRDAIWLKTGFED 163
            T KGRDL R+R+AIW K GF+D
Sbjct: 147 GTAKGRDLRRLRNAIWEKIGFQD 166

BLAST of CmaCh12G008150 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-17
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 67  ARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDRFRIPPHEFV-- 126
           +++ S    ++ P+N+PDWSK+  +     R       A   D+ + D   +PPHE+V  
Sbjct: 69  SKEVSGVKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVAR 128

Query: 127 --ARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGF 161
             ART+++SFS+ EG+GRTLKGRDLS+VR+A+  KTGF
Sbjct: 129 KLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGF 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G60680.16.0e-3551.50Protein of unknown function, DUF584 [more]
AT3G45210.11.3e-2646.58Protein of unknown function, DUF584 [more]
AT2G28400.13.6e-2442.94Protein of unknown function, DUF584 [more]
AT5G03230.16.2e-2443.36Protein of unknown function, DUF584 [more]
AT4G04630.17.3e-1742.86Protein of unknown function, DUF584 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 61..162
e-value: 1.7E-33
score: 116.8
NoneNo IPR availablePANTHERPTHR46525EMB|CAB72159.1coord: 1..162
NoneNo IPR availablePANTHERPTHR46525:SF2EMB|CAB72159.1coord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G008150.1CmaCh12G008150.1mRNA