CmaCh12G008130 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Histone H2B
Location	Cma_Chr12: 5943044 .. 5943466 (-)
RNA-Seq Expression	CmaCh12G008130
Synteny	CmaCh12G008130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGACAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGTAAGGCCATGGGGATTATGAACAGTTTTATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCGACCATCACCTCTCGGGAGATCCAAACCGCTGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAGTTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCGAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGACAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGTAAGGCCATGGGGATTATGAACAGTTTTATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCGACCATCACCTCTCGGGAGATCCAAACCGCTGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAGTTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCGAAGGCCGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGACAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGCGCCGATAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGTAAGGCCATGGGGATTATGAACAGTTTTATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAACTCGCTCGCTACAACAAGAAGCCGACCATCACCTCTCGGGAGATCCAAACCGCTGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAGTTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKDGADKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 130/148 (87.84%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKK---ADKAPAEKKPRAEKKLPKDGAD-----KKKKAKKSVET 60
           MAPK EKKPAEKKPAEEKK   A+KAPAEKKP+A KKLPK+G       KKK++KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 130/147 (88.44%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKK--ADKAPAEKKPRAEKKLPKDGA-----DKKKKAKKSVETY 60
           MAPKAEKKPAEKKPAEEKK  A+KAPAEKKP+A KKLPK+G       KKK+ KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 141
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-57
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KADKAPAEKKPRAEKKLPKD---GADKKKK-AKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KA+KAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 141
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot
Match: O65821 (Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 221.1 bits (562), Expect = 8.0e-57
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKD-GAD-KKKKAKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKA++ PAEKKP+A KKLPKD GAD KKKK+KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 141
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-56
Identity = 132/150 (88.00%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KADKAPAEKKPRAEKKLPKD---GADKKKK-AKKSV 60
           MAPKAEKKPAEKKPA EK      KA+KAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmaCh12G008130 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 2.5e-58
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KADKAPAEKKPRAEKKLPKD---GADKKKK-AKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KA+KAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 141
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CmaCh12G008130 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 7.4e-58
Identity = 132/150 (88.00%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KADKAPAEKKPRAEKKLPKD---GADKKKK-AKKSV 60
           MAPKAEKKPAEKKPA EK      KA+KAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmaCh12G008130 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-57
Identity = 131/150 (87.33%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KADKAPAEKKPRAEKKLPKD---GADKKKK-AKKSV 60
           MAP+AEKKPAEKKPA EK      KA+KAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmaCh12G008130 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 6.9e-56
Identity = 129/151 (85.43%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKADKAPAEKKPRAEKKLPKD----GADKKKK-AKKS 60
           MAPKA KKPAEKKPA      EEK A+KAPAEKKP+A KKLPK+    G +KKKK  KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmaCh12G008130 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 128/148 (86.49%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKADKAPAEKKPRAEKKL-PKDGADKKKK-AKKSVET 60
           MAP+AEKKPAEKK A      E K A+KAPAEKKP+A KKL PK+  DKKKK +KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 141
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of CmaCh12G008130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1S9I9	1.6e-57	87.84	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
O22582	1.6e-57	88.44	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q9LZT0	3.6e-57	91.03	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
O65821	8.0e-57	90.14	Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4	[more]
P40283	1.0e-56	88.00	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

BLAST of CmaCh12G008130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46030.1	2.5e-58	91.03	Histone superfamily protein	[more]
AT5G59910.1	7.4e-58	88.00	Histone superfamily protein	[more]
AT3G45980.1	3.7e-57	87.33	Histone superfamily protein	[more]
AT2G28720.1	6.9e-56	85.43	Histone superfamily protein	[more]
AT1G07790.1	1.2e-55	86.49	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 72..92 score: 75.74 coord: 94..111 score: 76.51 coord: 53..71 score: 80.55 coord: 124..137 score: 92.65 coord: 111..124 score: 92.45
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 43..139 e-value: 8.0E-73 score: 257.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..140
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 108..130
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..140 e-value: 4.8E-59 score: 199.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 23..140
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..116 e-value: 3.5E-22 score: 79.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR23428:SF278	HISTONE H2B	coord: 5..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008130.1	CmaCh12G008130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity