CmaCh12G008080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PLATZ transcription factor family protein
Location	Cma_Chr12: 5861464 .. 5862666 (-)
RNA-Seq Expression	CmaCh12G008080
Synteny	CmaCh12G008080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGGCAATGAAGCAATGCTTATAAAACCCAATTTTCTTGGGATTGTTTGGGATTTTCTCGGGAACCAAACAGAAAACAAAAGAAACCATGGTAATCCCAACATGGCTCGAATCTTTACTATCCACGCCGTTTTTCTACGCGTGTCCTTTGCATAAAGACGCTCCGAGAAGTGAATGCAATATGTTTTGCCTCGATTGTCATCATTGCGCGTTCTGCTTCTATTGCCGATCTGACCTACACCACGATCACCGTGTTATTCAGGTCGGTTTTCCTTATCATAATCGAACATGATCCTCTATTTCACAATGTGGGTATCAATTTTATCCTCTTGAATTTGTAATTCGTGTAGATTCGGAGATCATCGTACCATGACGTGGTAAGAGTGGCGGAGATCGAGAAAGTTTTGGATATAAGTGAAATCCAAACATATGTGATAAACAGCGCAAGAGTTTTGTTTTTGAATGAGAGGCCTCAACCGAAGAGCTCTGCTAGTAAAGGAGGCTCCCATGTGTGTGAGATTTGTAGTAGATGTCTCTTGGATCCCTTTCGTTTCTGTTCTCTTGGTTGCAAGGTAAATTTCTTTAGCTTCAAATTGAACTATGCTCGAGTTGATATTTTATGTATTATTTTAAATTTTACTGATAAAATGACGATATGGTAATGTCAAAATGTTAAATTTTTTCTTTATGCTTTAGTTTATGAAACCGACCTATCTAATGATGAAATTGATAATTTACCTACTTTATAATATGACCTAATATAGCATTATAACTTACCTAACCTTGAGTGGGTCCGTGCTATTATGGAAAATAATAATGTAACTACAGGTATTAACCGACCATCTCTTCTTCTTTATAAGCTTTCGACGAAAGTACTCTTTTCCATAAGTTGCAAACCTACTCGAGCGTAGTTCACTTTGAATCTCTCTTTTGGGTTTTATACTTTCAAATCAAGTGCCGTTTTCGTAAGTGATTTAGGTCAAGAACGAGGATTCAAACTTTTACCCGAACGAGCAGAAACACGAGGAGGTGTCGAGAAGAAGGGAAAGAATAGGAAGAAGATTGGGAGAAGAAGAGGAAGAGGAGGAAGAAGAATTGCGTGTAAGGAGAAACCAAGAAGGTGAAATTTACCAAAATCACACGCATCCTTCACATTCAAATTCAAGGAGGAGGAAAGGCATCCCTCAAAGAGCACCTTTTTAA

mRNA sequence

TATGGCAATGAAGCAATGCTTATAAAACCCAATTTTCTTGGGATTGTTTGGGATTTTCTCGGGAACCAAACAGAAAACAAAAGAAACCATGGTAATCCCAACATGGCTCGAATCTTTACTATCCACGCCGTTTTTCTACGCGTGTCCTTTGCATAAAGACGCTCCGAGAAGTGAATGCAATATGTTTTGCCTCGATTGTCATCATTGCGCGTTCTGCTTCTATTGCCGATCTGACCTACACCACGATCACCGTGTTATTCAGATTCGGAGATCATCGTACCATGACGTGGTAAGAGTGGCGGAGATCGAGAAAGTTTTGGATATAAGTGAAATCCAAACATATGTGATAAACAGCGCAAGAGTTTTGTTTTTGAATGAGAGGCCTCAACCGAAGAGCTCTGCTAGTAAAGGAGGCTCCCATGTGTGTGAGATTTGTAGTAGATGTCTCTTGGATCCCTTTCGTTTCTGTTCTCTTGGTTGCAAGGTCAAGAACGAGGATTCAAACTTTTACCCGAACGAGCAGAAACACGAGGAGGTGTCGAGAAGAAGGGAAAGAATAGGAAGAAGATTGGGAGAAGAAGAGGAAGAGGAGGAAGAAGAATTGCGTGTAAGGAGAAACCAAGAAGGTGAAATTTACCAAAATCACACGCATCCTTCACATTCAAATTCAAGGAGGAGGAAAGGCATCCCTCAAAGAGCACCTTTTTAA

Coding sequence (CDS)

ATGGTAATCCCAACATGGCTCGAATCTTTACTATCCACGCCGTTTTTCTACGCGTGTCCTTTGCATAAAGACGCTCCGAGAAGTGAATGCAATATGTTTTGCCTCGATTGTCATCATTGCGCGTTCTGCTTCTATTGCCGATCTGACCTACACCACGATCACCGTGTTATTCAGATTCGGAGATCATCGTACCATGACGTGGTAAGAGTGGCGGAGATCGAGAAAGTTTTGGATATAAGTGAAATCCAAACATATGTGATAAACAGCGCAAGAGTTTTGTTTTTGAATGAGAGGCCTCAACCGAAGAGCTCTGCTAGTAAAGGAGGCTCCCATGTGTGTGAGATTTGTAGTAGATGTCTCTTGGATCCCTTTCGTTTCTGTTCTCTTGGTTGCAAGGTCAAGAACGAGGATTCAAACTTTTACCCGAACGAGCAGAAACACGAGGAGGTGTCGAGAAGAAGGGAAAGAATAGGAAGAAGATTGGGAGAAGAAGAGGAAGAGGAGGAAGAAGAATTGCGTGTAAGGAGAAACCAAGAAGGTGAAATTTACCAAAATCACACGCATCCTTCACATTCAAATTCAAGGAGGAGGAAAGGCATCCCTCAAAGAGCACCTTTTTAA

Protein sequence

MVIPTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSSYHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDPFRFCSLGCKVKNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRRNQEGEIYQNHTHPSHSNSRRRKGIPQRAPF

Homology

[Close]

BLAST of CmaCh12G008080 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27
Identity = 58/130 (44.62%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WL++L +  FF  CP H+ A ++E N+ CLDC   + C +C    H  HR++Q+RR  
Sbjct: 6   PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDC-CTSLCPHCVPS-HRFHRLLQVRRYV 65

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDP 123
           YHDVVR+ +++K++D S +Q Y INSA+V+F+ +RPQ +    KG  + C  C R L +P
Sbjct: 66  YHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQ--FKGAGNYCTSCDRSLQEP 125

Query: 124 FRFCSLGCKV 134
           +  CSLGCKV
Sbjct: 126 YIHCSLGCKV 131

[Close]

BLAST of CmaCh12G008080 vs. TAIR 10
Match: AT2G27930.1 (PLATZ transcription factor family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.6e-56
Identity = 119/211 (56.40%), Postives = 137/211 (64.93%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WLE LL T FF  CP H++ PR+ECNMFCL C + AFCFYCRS  H DH V+QIRRSS
Sbjct: 4   PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPK-------SSASKGGSHVCEIC 123
           YHDVVRV+EIE  LDI  +QTYVINSARVLFLNERPQPK       SS  K  S+ CE C
Sbjct: 64  YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query: 124 SRCLLDPFRFCSLGCKVKNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRR 183
            R LLDPFRFCSLGCKV+                           G  + +EEEE R+R+
Sbjct: 124 CRTLLDPFRFCSLGCKVE---------------------------GMRKNKEEEEERLRK 183

Query: 184 NQEGEIYQNHTHPSH-SNSRRRKGIPQRAPF 207
            ++ E ++    P+H SNSRRRKGIP RAPF
Sbjct: 184 ERQQETHKGTHPPTHTSNSRRRKGIPHRAPF 187

[Close]

BLAST of CmaCh12G008080 vs. TAIR 10
Match: AT1G32700.1 (PLATZ transcription factor family protein )

HSP 1 Score: 164.5 bits (415), Expect = 9.2e-41
Identity = 96/211 (45.50%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WL+ LL   FF  C LH D+ +SECNM+CLDC +   C  C S  H DH  IQIRRSS
Sbjct: 12  PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLS-FHKDHHAIQIRRSS 71

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDP 123
           YHDV+RV+EI+K LDI+ +QTYVINSA+V+FLNERPQP+    KG  + CE+C R L+D 
Sbjct: 72  YHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPR--PGKGVINTCEVCYRSLVDS 131

Query: 124 FRFCSLGCKVKNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRRNQEGEIY 183
           FRFCSLGCK+                  ++R+     L + ++        R  +  +I 
Sbjct: 132 FRFCSLGCKISGIS-------------KKKRKEWTNNLSDSDDSYSSTSIGRLKKNDDIM 191

Query: 184 QNHTHPS--------HSNSRRRKGIPQRAPF 207
            N   PS           ++RRKGIP RAPF
Sbjct: 192 NNSFTPSTPPLSAVNRRIAKRRKGIPHRAPF 206

[Close]

BLAST of CmaCh12G008080 vs. TAIR 10
Match: AT1G21000.1 (PLATZ transcription factor family protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-40
Identity = 102/242 (42.15%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WL  +L   +F  C +H D+ ++ECN+FCLDC   AFC YC    H DHRV+QIRRSS
Sbjct: 16  PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVK-HKDHRVVQIRRSS 75

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDP 123
           YH+VVRV EI+K +DI+ +QTY+INSA+++FLNERPQP+    KG ++ CEIC R LLD 
Sbjct: 76  YHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPR--IGKGVTNTCEICCRSLLDS 135

Query: 124 FRFCSLGCKV----KNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRR--- 183
           FRFCSLGCK+    + + S  +  + KH      RE +G   G E +E     ++R+   
Sbjct: 136 FRFCSLGCKLGGMRRGDLSLTFSLKGKH-----GREYLG---GSESDEATTPTKMRKTNA 195

Query: 184 ------------------------------NQEGEIYQNHTHP--SHSNSRRRKGIPQRA 207
                                         ++ G  +   T P  +H NS RRKG+P RA
Sbjct: 196 FNRLMSGLSISTVRFDDYGPNGDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRA 246

[Close]

BLAST of CmaCh12G008080 vs. TAIR 10
Match: AT1G21000.2 (PLATZ transcription factor family protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-40
Identity = 102/242 (42.15%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WL  +L   +F  C +H D+ ++ECN+FCLDC   AFC YC    H DHRV+QIRRSS
Sbjct: 13  PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVK-HKDHRVVQIRRSS 72

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDP 123
           YH+VVRV EI+K +DI+ +QTY+INSA+++FLNERPQP+    KG ++ CEIC R LLD 
Sbjct: 73  YHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPR--IGKGVTNTCEICCRSLLDS 132

Query: 124 FRFCSLGCKV----KNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRR--- 183
           FRFCSLGCK+    + + S  +  + KH      RE +G   G E +E     ++R+   
Sbjct: 133 FRFCSLGCKLGGMRRGDLSLTFSLKGKH-----GREYLG---GSESDEATTPTKMRKTNA 192

Query: 184 ------------------------------NQEGEIYQNHTHP--SHSNSRRRKGIPQRA 207
                                         ++ G  +   T P  +H NS RRKG+P RA
Sbjct: 193 FNRLMSGLSISTVRFDDYGPNGDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRA 243

[Close]

BLAST of CmaCh12G008080 vs. TAIR 10
Match: AT1G76590.1 (PLATZ transcription factor family protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.9e-39
Identity = 104/239 (43.51%), Postives = 133/239 (55.65%), Query Frame = 0


Query: 4   PTWLESLLSTPFFYACPLHKDAPRSECNMFCLDCHHCAFCFYCRSDLHHDHRVIQIRRSS 63
           P WL  +L   +F  C +H  + +SECNMFCLDC   AFC YC  + H +HRV+QIRRSS
Sbjct: 18  PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLN-HRNHRVLQIRRSS 77

Query: 64  YHDVVRVAEIEKVLDISEIQTYVINSARVLFLNERPQPKSSASKGGSHVCEICSRCLLDP 123
           YH+VVRV EI+K +DIS +QTY+INSAR++FLNERPQP+    KG ++ CEIC R LLD 
Sbjct: 78  YHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPR--IGKGVTNTCEICCRSLLDS 137

Query: 124 FRFCSLGCK---VKNEDSNFYPNEQKHEEVSRRRERIGRRLGEEEEEEEEELRVRR---- 183
           FRFCSLGCK   +K + S  +    KH      RE  G     E +E     ++R+    
Sbjct: 138 FRFCSLGCKLGGMKRDPSLTFSLRGKH-----GREYEGE---WESDEATTPTKIRKTCAF 197

Query: 184 ---------------------------NQEGEIYQNHTHP--SHSNSRRRKGIPQRAPF 207
                                      ++ G      T P  +H NS RRKG+P RAPF
Sbjct: 198 NRLMSGLSISTVKCDYLSGDQPSSSSGDESGFKLSPGTPPIYNHRNSSRRKGVPHRAPF 245

The following BLAST results are available for this feature:

BLAST of CmaCh12G008080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3Q4	4.3e-27	44.62	Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh12G008080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27930.1	1.6e-56	56.40	PLATZ transcription factor family protein	[more]
AT1G32700.1	9.2e-41	45.50	PLATZ transcription factor family protein	[more]
AT1G21000.1	7.8e-40	42.15	PLATZ transcription factor family protein	[more]
AT1G21000.2	7.8e-40	42.15	PLATZ transcription factor family protein	[more]
AT1G76590.1	3.9e-39	43.51	PLATZ transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..206
None	No IPR available	PANTHER	PTHR31065:SF43	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 2..206
None	No IPR available	PANTHER	PTHR31065	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 2..206
IPR006734	PLATZ transcription factor	PFAM	PF04640	PLATZ	coord: 60..133 e-value: 4.0E-30 score: 104.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008080.1	CmaCh12G008080.1	mRNA