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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGCGCGCTTAAATTCTTGTCAGCCCTCCAACGGAAGGTCGAACCGAAGGAGATAGTAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAATTCTCGACCGAGCAAAAGCACTCTGATAGATTCAAGAGCGACTCACAACTTCATCGTCGATCAAGAAGCCCGAAGATTGGGACTCACTATAGGAAAGAACCCGAGGAAAATGAAAGCTGTTAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAAATAGAGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGTACTTGGGATGGAGTTTCTCCTAGAATAAAAAGTTATCCCAATGCCGCTGACAAAATGCTTAATCATCACCGACCGCAACCCCACAGTAATACCTACAAGCATCAAGCAACTAGGTAATTTTCGAATGATCTCGGCCATACAATTGAAAAGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGAAAGTAGCGCCACCGAAGAAACTGTCCCAAATGAAATCAAGGAGGTACTAAACAGTTATGCTGACATAATGCTGGAGAGCTTACCTCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAATAACGCATATCGGATGGCTCCGTCCGAGCTAGCCGAATTAAGGAAGCAACTAGATGAGTTGCTGAAGGTGGGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAAAAAGGTGACGATACGCAACAAATATCCACTGCTAATAATATCCGACTTTTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTAGACTTACGATCAGGGTATTACCAAGTACGTATTGTCGAAGGGGACGAGCCCAAGACGACGTGTGTAACAAGATATGGGGCCTTCAAATTCTTAGTAATGTCCTTTGGCTTGACAAACGCCCCAGCTACTTTTTGCACATTGATGAACCAAGTTTTCAACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATAGTGGTTTATAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAGAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATATTGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATGTGCGGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCATCGAAGGGTTTTCACGACGAGCTGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATATGAAAACAACCATGACGAGGGGTCCTGTCCTAGGATTGGTAGATGTTACAAAGTCATTTGAAATAGAAACAGATGCTTCCGACTTTGCCCTAGGTAGGGTTCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTATCTCCGAGAAAGAAATGTTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAGTATCTCTTGGGATCAAAGTTCGTAGTGAAGACGGATAACAGCGCTATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCGAACACAAAGCAGGTAAGAGTAATCAAGCAGCTGACGCACTGAATCGGAAGGGCGAACATGCGACCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCAATGCATGACATCATCAAGGAACATTTACACAAAGACCCATCGGCTAAAGCCGTCGTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGGGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAAAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAAAAGGGGTACATCTGGCCAAACATGCAAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGAACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGAAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGATGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCAACGTTCATCCCCACTCCCAAATTATGCTCGGCCGAACTCACAACTCAACTATTTTTCAAACACATTGTAAAGTTATGTGGCATTCCGTCGAGCATCATCAATGATAGGGATGGAAGATTCATTGGGACATTCTGGATTGAGTTATTTGCCTTCTTGGGAACAACCTTAAACATCTCCTTGAGTTACCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTTCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTGGATACAACTCTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACCAACTAG mRNA sequence ATGAGCGCGCTTAAATTCTTGTCAGCCCTCCAACGGAAGGTCGAACCGAAGGAGATAGTAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAATTCTCGACCGAGCAAAAGCACTCTGATAGATTCAAGAGCGACTCACAACTTCATCGTCGATCAAGAAGCCCGAAGATTGGGACTCACTATAGGAAAGAACCCGAGGAAAATGAAAGCTGTTAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAAATAGAGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGAAAGTAGCGCCACCGAAGAAACTGTCCCAAATGAAATCAAGGAGGTACTAAACAGTTATGCTGACATAATGCTGGAGAGCTTACCTCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAATAACGCATATCGGATGGCTCCGTCCGAGCTAGCCGAATTAAGGAAGCAACTAGATGAGTTGCTGAAGGTGGGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAAAAAGGTGACGATACGCAACAAATATCCACTGCTAATAATATCCGACTTTTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTAGACTTACGATCAGGGTATTACCAAGTACGTATTGTCGAAGGGGACGAGCCCAAGACGACGTGTGTAACAAGATATGGGGCCTTCAAATTCTTAGTAATGTCCTTTGGCTTGACAAACGCCCCAGCTACTTTTTGCACATTGATGAACCAAGTTTTCAACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATAGTGGTTTATAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAGAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATATTGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATGTGCGGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCATCGAAGGGTTTTCACGACGAGCTGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATATGAAAACAACCATGACGAGGGGTCCTGTCCTAGGATTGGTAGATGTTACAAAGTCATTTGAAATAGAAACAGATGCTTCCGACTTTGCCCTAGGTAGGGTTCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTATCTCCGAGAAAGAAATGTTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAGTATCTCTTGGGATCAAAGTTCGTAGTGAAGACGGATAACAGCGCTATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCGAACACAAAGCAGGTAAGAGTAATCAAGCAGCTGACGCACTGAATCGGAAGGGCGAACATGCGACCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCAATGCATGACATCATCAAGGAACATTTACACAAAGACCCATCGGCTAAAGCCGTCGTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGGGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAAAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAAAAGGGGTACATCTGGCCAAACATGCAAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGAACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGAAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGATGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCAACGTTCATCCCCACTCCCAAATTATGCTCGGCCGAACTCACAACTCAACTATTTTTCAAACACATTGTAAAGTTATGTGGCATTCCGTCGAGCATCATCAATGATAGGGATGGAAGATTCATTGGGACATTCTGGATTGAGTTATTTGCCTTCTTGGGAACAACCTTAAACATCTCCTTGAGTTACCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTTCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTGGATACAACTCTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACCAACTAG Coding sequence (CDS) ATGAGCGCGCTTAAATTCTTGTCAGCCCTCCAACGGAAGGTCGAACCGAAGGAGATAGTAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAATTCTCGACCGAGCAAAAGCACTCTGATAGATTCAAGAGCGACTCACAACTTCATCGTCGATCAAGAAGCCCGAAGATTGGGACTCACTATAGGAAAGAACCCGAGGAAAATGAAAGCTGTTAACTCTGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAAATAGAGGATTGGACAGGAGAGCTAGATCTTGTCGTAGCTCGCATGGACGACTTTGACGTGGGGACTCGCACGAGAGGAACCTACATTTATGGCCATACCATTGATGAAAGTAGCGCCACCGAAGAAACTGTCCCAAATGAAATCAAGGAGGTACTAAACAGTTATGCTGACATAATGCTGGAGAGCTTACCTCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAATAACGCATATCGGATGGCTCCGTCCGAGCTAGCCGAATTAAGGAAGCAACTAGATGAGTTGCTGAAGGTGGGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAAAAAGGTGACGATACGCAACAAATATCCACTGCTAATAATATCCGACTTTTTCGACCAACTTCACGGGGCCAAGTACTTCACGAAGTTAGACTTACGATCAGGGTATTACCAAGTACGTATTGTCGAAGGGGACGAGCCCAAGACGACGTGTGTAACAAGATATGGGGCCTTCAAATTCTTAGTAATGTCCTTTGGCTTGACAAACGCCCCAGCTACTTTTTGCACATTGATGAACCAAGTTTTCAACGAATACTTGGATCAGTTCGTCATAGTATACCTCGACGACATAGTGGTTTATAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAGAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATATTGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATGTGCGGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCATCGAAGGGTTTTCACGACGAGCTGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATATGAAAACAACCATGACGAGGGGTCCTGTCCTAGGATTGGTAGATGTTACAAAGTCATTTGAAATAGAAACAGATGCTTCCGACTTTGCCCTAGGTAGGGTTCTTATTCAAGAAGGCCACCCCATCGCTTACGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTATCTCCGAGAAAGAAATGTTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAGTATCTCTTGGGATCAAAGTTCGTAGTGAAGACGGATAACAGCGCTATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCGAACACAAAGCAGGTAAGAGTAATCAAGCAGCTGACGCACTGAATCGGAAGGGCGAACATGCGACCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCAATGCATGACATCATCAAGGAACATTTACACAAAGACCCATCGGCTAAAGCCGTCGTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGGGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAAAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAAAAGGGGTACATCTGGCCAAACATGCAAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGAACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGAAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGATGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCAACGTTCATCCCCACTCCCAAATTATGCTCGGCCGAACTCACAACTCAACTATTTTTCAAACACATTGTAAAGTTATGTGGCATTCCGTCGAGCATCATCAATGATAGGGATGGAAGATTCATTGGGACATTCTGGATTGAGTTATTTGCCTTCTTGGGAACAACCTTAAACATCTCCTTGAGTTACCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTTCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTGGATACAACTCTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACCAACTAG Protein sequence MSALKFLSALQRKVEPKEIVEKGLMFVDATINSRPSKSTLIDSRATHNFIVDQEARRLGLTIGKNPRKMKAVNSEALPIVGVSKRVPFKIEDWTGELDLVVARMDDFDVGTRTRGTYIYGHTIDESSATEETVPNEIKEVLNSYADIMLESLPQTLPPRRGIDHEIELIPGVKPPANNAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVTIRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMSFGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFIEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDASDFALGRVLIQEGHPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGSKFVVKTDNSAICHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADALNRKGEHATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDIMQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTTLNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFNCQTN
Homology
BLAST of CmaCh12G007990 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-123 Identity = 252/769 (32.77%), Postives = 407/769 (52.93%), Query Frame = 0
Query: 121 HTIDESSATEETVPN-EIKEVLNSYADIMLESLPQTLP-PRRGIDHEIELI-PGVKPPAN 180
HT+ + + V E+ ++ + DI E+ + LP P +G++ E+EL + P
Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416
Query: 181 NAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVT 240
N Y + P ++ + ++++ LK G IR +KA PV+F KK+GTLR+ +DY+ L K
Sbjct: 417 N-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 476
Query: 241 IRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMS 300
N YPL +I ++ G+ FTKLDL+S Y+ +R+ +GDE K G F++LVM
Sbjct: 477 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 536
Query: 301 FGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLY 360
+G++ APA F +N + E + V+ Y+DDI+++S + EH H+K V KL+ L
Sbjct: 537 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 596
Query: 361 VKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRF 420
+ + KC F Q+ + F+G+ + + + I + +WK P + ++R FLG NY R+F
Sbjct: 597 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 656
Query: 421 IEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDAS 480
I S+ PL LLKKD W W+ A E++K + PVL D +K +ETDAS
Sbjct: 657 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 716
Query: 481 DFALGRVLIQEG-----HPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGS-- 540
D A+G VL Q+ +P+ Y S K++ A+ Y++S+KEMLA++ L+ WR YL +
Sbjct: 717 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIE 776
Query: 541 KFVVKTDN-SAICHFFDQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALNRKGEH 600
F + TD+ + I ++ + K+ ARWQ L +F+F+ ++ G +N ADAL+R +
Sbjct: 777 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE 836
Query: 601 ATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGK------------TRQFW 660
I D S++ + + + D + V E K
Sbjct: 837 T-----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ 896
Query: 661 VEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDI 720
++ LL+ +++ +P +L + +I++ H+ + HPG + +I + + W ++ I
Sbjct: 897 LKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQI 956
Query: 721 MQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDR 780
+Y + C CQ NK K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDR
Sbjct: 957 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDR 1016
Query: 781 FSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTT 840
FSK A +P K +AE T ++F + ++ G P II D D F W +
Sbjct: 1017 FSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFV 1076
Query: 841 LNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFN 866
+ SL Y PQTDGQTER N +E+ LR W+ + + Q +N
Sbjct: 1077 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
BLAST of CmaCh12G007990 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-123 Identity = 252/769 (32.77%), Postives = 407/769 (52.93%), Query Frame = 0
Query: 121 HTIDESSATEETVPN-EIKEVLNSYADIMLESLPQTLP-PRRGIDHEIELI-PGVKPPAN 180
HT+ + + V E+ ++ + DI E+ + LP P +G++ E+EL + P
Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416
Query: 181 NAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVT 240
N Y + P ++ + ++++ LK G IR +KA PV+F KK+GTLR+ +DY+ L K
Sbjct: 417 N-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 476
Query: 241 IRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMS 300
N YPL +I ++ G+ FTKLDL+S Y+ +R+ +GDE K G F++LVM
Sbjct: 477 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 536
Query: 301 FGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLY 360
+G++ APA F +N + E + V+ Y+DDI+++S + EH H+K V KL+ L
Sbjct: 537 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 596
Query: 361 VKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRF 420
+ + KC F Q+ + F+G+ + + + I + +WK P + ++R FLG NY R+F
Sbjct: 597 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 656
Query: 421 IEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDAS 480
I S+ PL LLKKD W W+ A E++K + PVL D +K +ETDAS
Sbjct: 657 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 716
Query: 481 DFALGRVLIQEG-----HPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGS-- 540
D A+G VL Q+ +P+ Y S K++ A+ Y++S+KEMLA++ L+ WR YL +
Sbjct: 717 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIE 776
Query: 541 KFVVKTDN-SAICHFFDQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALNRKGEH 600
F + TD+ + I ++ + K+ ARWQ L +F+F+ ++ G +N ADAL+R +
Sbjct: 777 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE 836
Query: 601 ATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGK------------TRQFW 660
I D S++ + + + D + V E K
Sbjct: 837 T-----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ 896
Query: 661 VEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDI 720
++ LL+ +++ +P +L + +I++ H+ + HPG + +I + + W ++ I
Sbjct: 897 LKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQI 956
Query: 721 MQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDR 780
+Y + C CQ NK K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDR
Sbjct: 957 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDR 1016
Query: 781 FSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTT 840
FSK A +P K +AE T ++F + ++ G P II D D F W +
Sbjct: 1017 FSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFV 1076
Query: 841 LNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFN 866
+ SL Y PQTDGQTER N +E+ LR W+ + + Q +N
Sbjct: 1077 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
BLAST of CmaCh12G007990 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-123 Identity = 252/769 (32.77%), Postives = 407/769 (52.93%), Query Frame = 0
Query: 121 HTIDESSATEETVPN-EIKEVLNSYADIMLESLPQTLP-PRRGIDHEIELI-PGVKPPAN 180
HT+ + + V E+ ++ + DI E+ + LP P +G++ E+EL + P
Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416
Query: 181 NAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVT 240
N Y + P ++ + ++++ LK G IR +KA PV+F KK+GTLR+ +DY+ L K
Sbjct: 417 N-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 476
Query: 241 IRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMS 300
N YPL +I ++ G+ FTKLDL+S Y+ +R+ +GDE K G F++LVM
Sbjct: 477 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 536
Query: 301 FGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLY 360
+G++ APA F +N + E + V+ Y+DDI+++S + EH H+K V KL+ L
Sbjct: 537 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 596
Query: 361 VKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRF 420
+ + KC F Q+ + F+G+ + + + I + +WK P + ++R FLG NY R+F
Sbjct: 597 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 656
Query: 421 IEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDAS 480
I S+ PL LLKKD W W+ A E++K + PVL D +K +ETDAS
Sbjct: 657 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 716
Query: 481 DFALGRVLIQEG-----HPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGS-- 540
D A+G VL Q+ +P+ Y S K++ A+ Y++S+KEMLA++ L+ WR YL +
Sbjct: 717 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIE 776
Query: 541 KFVVKTDN-SAICHFFDQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALNRKGEH 600
F + TD+ + I ++ + K+ ARWQ L +F+F+ ++ G +N ADAL+R +
Sbjct: 777 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE 836
Query: 601 ATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGK------------TRQFW 660
I D S++ + + + D + V E K
Sbjct: 837 T-----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ 896
Query: 661 VEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDI 720
++ LL+ +++ +P +L + +I++ H+ + HPG + +I + + W ++ I
Sbjct: 897 LKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQI 956
Query: 721 MQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDR 780
+Y + C CQ NK K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDR
Sbjct: 957 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDR 1016
Query: 781 FSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTT 840
FSK A +P K +AE T ++F + ++ G P II D D F W +
Sbjct: 1017 FSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFV 1076
Query: 841 LNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFN 866
+ SL Y PQTDGQTER N +E+ LR W+ + + Q +N
Sbjct: 1077 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
BLAST of CmaCh12G007990 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-123 Identity = 252/769 (32.77%), Postives = 407/769 (52.93%), Query Frame = 0
Query: 121 HTIDESSATEETVPN-EIKEVLNSYADIMLESLPQTLP-PRRGIDHEIELI-PGVKPPAN 180
HT+ + + V E+ ++ + DI E+ + LP P +G++ E+EL + P
Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416
Query: 181 NAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVT 240
N Y + P ++ + ++++ LK G IR +KA PV+F KK+GTLR+ +DY+ L K
Sbjct: 417 N-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 476
Query: 241 IRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMS 300
N YPL +I ++ G+ FTKLDL+S Y+ +R+ +GDE K G F++LVM
Sbjct: 477 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 536
Query: 301 FGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLY 360
+G++ APA F +N + E + V+ Y+DDI+++S + EH H+K V KL+ L
Sbjct: 537 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 596
Query: 361 VKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRF 420
+ + KC F Q+ + F+G+ + + + I + +WK P + ++R FLG NY R+F
Sbjct: 597 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 656
Query: 421 IEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDAS 480
I S+ PL LLKKD W W+ A E++K + PVL D +K +ETDAS
Sbjct: 657 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 716
Query: 481 DFALGRVLIQEG-----HPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGS-- 540
D A+G VL Q+ +P+ Y S K++ A+ Y++S+KEMLA++ L+ WR YL +
Sbjct: 717 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIE 776
Query: 541 KFVVKTDN-SAICHFFDQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALNRKGEH 600
F + TD+ + I ++ + K+ ARWQ L +F+F+ ++ G +N ADAL+R +
Sbjct: 777 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE 836
Query: 601 ATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGK------------TRQFW 660
I D S++ + + + D + V E K
Sbjct: 837 T-----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ 896
Query: 661 VEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDI 720
++ LL+ +++ +P +L + +I++ H+ + HPG + +I + + W ++ I
Sbjct: 897 LKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQI 956
Query: 721 MQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDR 780
+Y + C CQ NK K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDR
Sbjct: 957 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDR 1016
Query: 781 FSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTT 840
FSK A +P K +AE T ++F + ++ G P II D D F W +
Sbjct: 1017 FSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFV 1076
Query: 841 LNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFN 866
+ SL Y PQTDGQTER N +E+ LR W+ + + Q +N
Sbjct: 1077 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
BLAST of CmaCh12G007990 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-123 Identity = 252/769 (32.77%), Postives = 407/769 (52.93%), Query Frame = 0
Query: 121 HTIDESSATEETVPN-EIKEVLNSYADIMLESLPQTLP-PRRGIDHEIELI-PGVKPPAN 180
HT+ + + V E+ ++ + DI E+ + LP P +G++ E+EL + P
Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416
Query: 181 NAYRMAPSELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALKKVT 240
N Y + P ++ + ++++ LK G IR +KA PV+F KK+GTLR+ +DY+ L K
Sbjct: 417 N-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 476
Query: 241 IRNKYPLLIISDFFDQLHGAKYFTKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFKFLVMS 300
N YPL +I ++ G+ FTKLDL+S Y+ +R+ +GDE K G F++LVM
Sbjct: 477 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 536
Query: 301 FGLTNAPATFCTLMNQVFNEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLY 360
+G++ APA F +N + E + V+ Y+DDI+++S + EH H+K V KL+ L
Sbjct: 537 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 596
Query: 361 VKKEKCAFAQTCINFLGHIVKCGQISMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRF 420
+ + KC F Q+ + F+G+ + + + I + +WK P + ++R FLG NY R+F
Sbjct: 597 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 656
Query: 421 IEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPVLGLVDVTKSFEIETDAS 480
I S+ PL LLKKD W W+ A E++K + PVL D +K +ETDAS
Sbjct: 657 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 716
Query: 481 DFALGRVLIQEG-----HPIAYESRKLNDAERRYTISEKEMLAVVHCLRVWRQYLLGS-- 540
D A+G VL Q+ +P+ Y S K++ A+ Y++S+KEMLA++ L+ WR YL +
Sbjct: 717 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIE 776
Query: 541 KFVVKTDN-SAICHFFDQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALNRKGEH 600
F + TD+ + I ++ + K+ ARWQ L +F+F+ ++ G +N ADAL+R +
Sbjct: 777 PFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE 836
Query: 601 ATLCMLAHIHSSKIDGSMHDIIKEHLHKDPSAKAVVELAKAGK------------TRQFW 660
I D S++ + + + D + V E K
Sbjct: 837 T-----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQ 896
Query: 661 VEGDLLMTKGNRLYVPRTGKLRKKLIQECHDTLWVGHPGWQRTYALIKKGYIWPNMQDDI 720
++ LL+ +++ +P +L + +I++ H+ + HPG + +I + + W ++ I
Sbjct: 897 LKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQI 956
Query: 721 MQYTKTCLICQQNKVEKAKVSGLLKPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDR 780
+Y + C CQ NK K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDR
Sbjct: 957 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDR 1016
Query: 781 FSKYATFIPTPKLCSAELTTQLFFKHIVKLCGIPSSIINDRDGRFIGTFWIELFAFLGTT 840
FSK A +P K +AE T ++F + ++ G P II D D F W +
Sbjct: 1017 FSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFV 1076
Query: 841 LNISLSYHPQTDGQTERFNFLLEEYLRHFVDARQKNWIQLLDVAQFCFN 866
+ SL Y PQTDGQTER N +E+ LR W+ + + Q +N
Sbjct: 1077 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYN 1119
BLAST of CmaCh12G007990 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 1.2e-20 Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 343 HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLG--HIVKCGQISMDSDKIKAIQEWKVPTS 402
HL +V Q+Q Y ++KCAF Q I +LG HI+ +S D K++A+ W P +
Sbjct: 3 HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62
Query: 403 VSDVRSFLGLANYYRRFIEGFSRRAAPLTELLKKDHPWSWSNDCQMAFEDMKTTMTRGPV 462
+++R FLGL YYRRF++ + + PLTELLKK + W+ +AF+ +K +T PV
Sbjct: 63 TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122
Query: 463 LGLVDVTKSF 471
L L D+ F
Sbjct: 123 LALPDLKLPF 131
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P0CT41 | 8.0e-123 | 32.77 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... | [more] |
| P0CT34 | 8.0e-123 | 32.77 | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT35 | 8.0e-123 | 32.77 | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT36 | 8.0e-123 | 32.77 | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT37 | 8.0e-123 | 32.77 | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ATMG00860.1 | 1.2e-20 | 39.23 | DNA/RNA polymerases superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR021109 | Aspartic peptidase domain superfamily | GENE3D | 2.40.70.10 | Acid Proteases | coord: 8..110
e-value: 5.2E-11
score: 44.3 |
| None | No IPR available | GENE3D | 3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | coord: 162..302
e-value: 3.5E-84
score: 283.4 |
| None | No IPR available | PFAM | PF08284 | RVP_2 | coord: 30..109
e-value: 1.1E-4
score: 22.0 |
| None | No IPR available | GENE3D | 1.10.340.70 | | coord: 621..710
e-value: 7.3E-20
score: 73.0 |
| None | No IPR available | GENE3D | 3.10.20.370 | | coord: 470..536
e-value: 6.8E-7
score: 31.2 |
| None | No IPR available | PANTHER | PTHR24559 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN | coord: 137..857 |
| None | No IPR available | PANTHER | PTHR24559:SF324 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN | coord: 137..857 |
| None | No IPR available | CDD | cd01647 | RT_LTR | coord: 201..377
e-value: 7.81501E-83
score: 261.376 |
| None | No IPR available | CDD | cd00303 | retropepsin_like | coord: 27..109
e-value: 3.38571E-12
score: 61.1984 |
| None | No IPR available | CDD | cd09274 | RNase_HI_RT_Ty3 | coord: 471..585
e-value: 2.41286E-54
score: 181.922 |
| IPR041588 | Integrase zinc-binding domain | PFAM | PF17921 | Integrase_H2C2 | coord: 656..711
e-value: 4.0E-20
score: 71.6 |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | GENE3D | 3.30.70.270 | | coord: 386..469
e-value: 3.8E-29
score: 102.5 |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | GENE3D | 3.30.70.270 | | coord: 242..377
e-value: 3.5E-84
score: 283.4 |
| IPR000477 | Reverse transcriptase domain | PFAM | PF00078 | RVT_1 | coord: 218..376
e-value: 1.0E-25
score: 90.6 |
| IPR000477 | Reverse transcriptase domain | PROSITE | PS50878 | RT_POL | coord: 198..377
score: 13.098412 |
| IPR036397 | Ribonuclease H superfamily | GENE3D | 3.30.420.10 | | coord: 720..869
e-value: 3.3E-33
score: 116.6 |
| IPR041373 | Reverse transcriptase, RNase H-like domain | PFAM | PF17917 | RT_RNaseH | coord: 465..564
e-value: 7.0E-31
score: 106.6 |
| IPR001584 | Integrase, catalytic core | PROSITE | PS50994 | INTEGRASE | coord: 725..869
score: 19.512712 |
| IPR043502 | DNA/RNA polymerase superfamily | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 140..570 |
| IPR012337 | Ribonuclease H-like superfamily | SUPERFAMILY | 53098 | Ribonuclease H-like | coord: 722..866 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
| biological_process |
GO:0006508 |
proteolysis |
| biological_process |
GO:0006278 |
RNA-dependent DNA biosynthetic process |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0004519 |
endonuclease activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003964 |
RNA-directed DNA polymerase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
|
