CmaCh12G007770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G007770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionChloroplast envelope membrane protein
LocationCma_Chr12: 5166800 .. 5168032 (-)
RNA-Seq ExpressionCmaCh12G007770
SyntenyCmaCh12G007770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAGAATCTGACCCACCCCACGAGAGAGAAATTCAAAATTGAGCAAAAGGCTGCCAAATTGGCTGACCTATTTCTTGCGTGTACCAATTGAAGTTTCCTTGAGGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGGATAAAACGGAAAAGAAAGAATAGTCTTTTTTATAGACCCTAGTATAACTTAACGGGAATTTCTGAAGAATGCTTATTCATTTGAGCCAAAGCAGACGTATAGGGAACAGACGGAAAACTGTCTTTCTTTGTCTGAAATTATGATGCGTATGTAACTCCACAGTAACAAAAGTGGATTCTTTGATATTTGCTTTTTGTATTATTTCGAAATTCAAGGATTAACTAATGAATAGGGAATGGATTCATAATAGTATCCATATAACTTTACATAGAACTTATGTTTGATATAAATATCAGTAGTGTAGAGAGGGAACGAATGAAGTGAGTTCATTAACAAATCAAAGACGAATGGCAAACAAGAAAGCATTCATTCCCCTTTTATATCTTGCATCTATAGTCTTTTTTCCCTGGTGGATCTCTATTTAATAAAAGCCTAGAATCTTGGGTTACTCATTGGTGGAATATTGGTCAATCCGAAATGTTGTTGAATTAGATGAAAGAAAAGATTATTATAACAAAAGTGAGAGAATTAGAGGAACTCTTTCCCTTGGACGAAATGTTAAAGGAATACCCAGAAAGACATCTATTTACAAAAGCTTCGTATCGGAATCTACAAAGAAAAGAAAGGATCCATCCAATTGATCAAGATGCACAATGAATGAGGATCGTATCCATACGATTTTGCACTTCTGGACAAATAGAATCCGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGATAATTAAGAACTTGTTATTCTTCACTCTTGGATTCACGACTTCCTATATAATTTAAGCGACACAATCAAAGTTTTTTCTATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTTTTGTTTCCACTTTGCCAGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

mRNA sequence

ATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAGAATCTGACCCACCCCACGAGAGAGAAATTCAAAATTGAGCAAAAGGCTGCCAAATTGGCTGACCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTTTTGTTTCCACTTTGCCAGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Coding sequence (CDS)

ATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAGAATCTGACCCACCCCACGAGAGAGAAATTCAAAATTGAGCAAAAGGCTGCCAAATTGGCTGACCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTTTTGTTTCCACTTTGCCAGTCATTCTGGACACAACAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Protein sequence

MHVVSFIWKSEAKGPLTRTDQNLTHPTREKFKIEQKAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDTTNIGSLFKSSISVTCSD
Homology
[Close]
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match: Q70XZ1 (Chloroplast envelope membrane protein OS=Amborella trichopoda OX=13333 GN=cemA PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SG VST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match: A6MM48 (Chloroplast envelope membrane protein OS=Buxus microphylla OX=153571 GN=cemA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-17
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SG VST PVILDT
Sbjct: 147 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 200

[Close]
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match: Q0G9K7 (Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-17
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SG VST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match: B1NWG2 (Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-17
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SG VST PVILDT
Sbjct: 152 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 205

[Close]
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match: Q0ZJ08 (Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-17
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SG VST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh12G007770 vs. TAIR 10
Match: ATCG00530.1 (CemA-like proton extrusion protein-related )

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-16
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 36  KAAKLADLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGFVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIG +YKDF F+H +QILSG VST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

The following BLAST results are available for this feature:
BLAST of CmaCh12G007770 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q70XZ11.6e-1777.78Chloroplast envelope membrane protein OS=Amborella trichopoda OX=13333 GN=cemA P... [more]
A6MM486.1e-1775.93Chloroplast envelope membrane protein OS=Buxus microphylla OX=153571 GN=cemA PE=... [more]
Q0G9K76.1e-1775.93Chloroplast envelope membrane protein OS=Liriodendron tulipifera OX=3415 GN=cemA... [more]
B1NWG26.1e-1775.93Chloroplast envelope membrane protein OS=Manihot esculenta OX=3983 GN=cemA PE=3 ... [more]
Q0ZJ086.1e-1775.93Chloroplast envelope membrane protein OS=Vitis vinifera OX=29760 GN=cemA PE=3 SV... [more]
BLAST of CmaCh12G007770 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00530.14.1e-1670.37CemA-like proton extrusion protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 47..90
e-value: 1.5E-14
score: 54.5
IPR004282Chloroplast envelope membrane protein, CemAPANTHERPTHR33650CHLOROPLAST ENVELOPE MEMBRANE PROTEIN-RELATEDcoord: 46..89
NoneNo IPR availablePANTHERPTHR33650:SF2CHLOROPLAST ENVELOPE MEMBRANE PROTEINcoord: 46..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007770.1CmaCh12G007770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015078 proton transmembrane transporter activity