CmaCh12G007750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G007750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome f
Location	Cma_Chr12: 5165729 .. 5166092 (-)
RNA-Seq Expression	CmaCh12G007750
Synteny	CmaCh12G007750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGTAACCGTGGAAGGGGTCAGATTTACCAAGGAGTCAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCAAGGACCAGAACTTCTTGTTTCAGATGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCAATCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

mRNA sequence

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGTAACCGTGGAAGGGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCAAGGACCAGAACTTCTTGTTTCAGATGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCAATCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

Coding sequence (CDS)

ATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGTAACCGTGGAAGGGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCAAGGACCAGAACTTCTTGTTTCAGATGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCAATCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

Protein sequence

MFTSENIPYTEAVTVEGWMHRMSGKWLILSLKDQNFLFQMAGESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFFYLL

Homology

[Close]

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot
Match: A8SEB6 (Cytochrome f OS=Ceratophyllum demersum OX=4428 GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 42  GESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFFY 84
           GESIKI+QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF+
Sbjct: 253 GESIKIDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot
Match: A1E9K3 (Cytochrome f OS=Hordeum vulgare OX=4513 GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 42  GESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFFY 84
           GESIKI+QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF+
Sbjct: 253 GESIKIDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot
Match: A1EA21 (Cytochrome f OS=Agrostis stolonifera OX=63632 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-13
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 24  GKWLILSLKDQNFLFQMAGESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFFY 83
           G+ +I ++     L    GESIK++QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF+
Sbjct: 235 GRQVIDTIPPGPELLVSEGESIKLDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot
Match: A8Y999 (Cytochrome f OS=Lolium perenne OX=4522 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-13
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 24  GKWLILSLKDQNFLFQMAGESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFFY 83
           G+ +I ++     L    GESIK++QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF+
Sbjct: 235 GRQVIDTIPPGPELLVSEGESIKLDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFFF 293

[Close]

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot
Match: Q14FE4 (Cytochrome f OS=Populus alba OX=43335 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-13
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 24  GKWLILSLKDQNFLFQMAGESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFF 83
           G+ +I S+     L    GESIK++QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 235 GRQVIDSIPPGPELLVSEGESIKLDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]

BLAST of CmaCh12G007750 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 42  GESIKINQPLTSNQSNVGGFGQGDAEIVLQDPLRVQGLLFF 83
           GESIK++QPLTSN  NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 253 GESIKLDQPLTSN-PNVGGFGQGDAEIVLQDPLRVQGLLFF 292

The following BLAST results are available for this feature:

BLAST of CmaCh12G007750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8SEB6	1.9e-13	90.48	Cytochrome f OS=Ceratophyllum demersum OX=4428 GN=petA PE=3 SV=1	[more]
A1E9K3	1.9e-13	90.48	Cytochrome f OS=Hordeum vulgare OX=4513 GN=petA PE=3 SV=1	[more]
A1EA21	2.5e-13	66.67	Cytochrome f OS=Agrostis stolonifera OX=63632 GN=petA PE=3 SV=1	[more]
A8Y999	2.5e-13	66.67	Cytochrome f OS=Lolium perenne OX=4522 GN=petA PE=3 SV=1	[more]
Q14FE4	2.5e-13	69.49	Cytochrome f OS=Populus alba OX=43335 GN=petA PE=3 SV=1	[more]

BLAST of CmaCh12G007750 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00540.1	5.2e-14	90.24	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 49..69 score: 57.76 coord: 70..85 score: 49.28
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 37..83 e-value: 1.3E-13 score: 51.1
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 1..85 score: 14.047212
IPR036826	Cytochrome f large domain superfamily	GENE3D	2.60.40.830	Cytochrome f large domain	coord: 54..75 e-value: 3.9E-10 score: 41.6
IPR036826	Cytochrome f large domain superfamily	SUPERFAMILY	49441	Cytochrome f, large domain	coord: 52..75
None	No IPR available	GENE3D	2.40.50.100		coord: 19..53 e-value: 3.9E-10 score: 41.6
None	No IPR available	PANTHER	PTHR33288:SF3	CYTOCHROME F	coord: 39..83
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 39..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G007750.1	CmaCh12G007750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding