CmaCh12G007740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G007740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome b559 subunit beta
Location	Cma_Chr12: 5164277 .. 5164487 (+)
RNA-Seq Expression	CmaCh12G007740
Synteny	CmaCh12G007740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATGGTTGGGGGGGTTAGTTGTTCACGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAGTTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCCGAATGAACACGATGTTGAATTGAATCGTACCTGTCTTTACTGG

mRNA sequence

ATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATGGTTGGGGGGGTTAGTTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAGTTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCCGAATGAACACGATGTTGAATTGAATCGTACCTGTCTTTACTGG

Coding sequence (CDS)

ATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATGGTTGGGGGGGTTAGTTGTTCACGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAGTTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCCGAATGAACACGATGTTGAATTGAATCGTACCTGTCTTTACTGG

Protein sequence

MTIDQTYPILTVRWLGGLVVHGLAVPTGQYQQCSSSNEKPNPNYGALTQSNPNEHDVELNRTCLYW

Homology

[Close]

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot
Match: Q7J1C5 (Cytochrome b559 subunit beta OS=Acorus calamus OX=4465 GN=psbF PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

[Close]

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot
Match: Q6EYW3 (Cytochrome b559 subunit beta OS=Agathis robusta OX=60854 GN=psbF PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

[Close]

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot
Match: P60248 (Cytochrome b559 subunit beta OS=Amborella trichopoda OX=13333 GN=psbF PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

[Close]

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot
Match: Q67HN7 (Cytochrome b559 subunit beta OS=Ananas comosus OX=4615 GN=psbF PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

[Close]

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot
Match: P60249 (Cytochrome b559 subunit beta OS=Anthoceros angustus OX=48387 GN=psbF PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

[Close]

BLAST of CmaCh12G007740 vs. TAIR 10
Match: ATCG00570.1 (photosystem II reaction center protein F )

HSP 1 Score: 44.3 bits (103), Expect = 4.5e-05
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  MTIDQTYPILTVRWLGGLVVHGLAVPT 28
          MTID+TYPI TVRW   L VHGLAVPT
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPT 24

The following BLAST results are available for this feature:

BLAST of CmaCh12G007740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7J1C5	6.3e-04	77.78	Cytochrome b559 subunit beta OS=Acorus calamus OX=4465 GN=psbF PE=3 SV=1	[more]
Q6EYW3	6.3e-04	77.78	Cytochrome b559 subunit beta OS=Agathis robusta OX=60854 GN=psbF PE=3 SV=1	[more]
P60248	6.3e-04	77.78	Cytochrome b559 subunit beta OS=Amborella trichopoda OX=13333 GN=psbF PE=3 SV=1	[more]
Q67HN7	6.3e-04	77.78	Cytochrome b559 subunit beta OS=Ananas comosus OX=4615 GN=psbF PE=3 SV=1	[more]
P60249	6.3e-04	77.78	Cytochrome b559 subunit beta OS=Anthoceros angustus OX=48387 GN=psbF PE=2 SV=1	[more]

BLAST of CmaCh12G007740 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00570.1	4.5e-05	77.78	photosystem II reaction center protein F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013081	Photosystem II cytochrome b559, N-terminal	PFAM	PF00283	Cytochrom_B559	coord: 1..27 e-value: 2.3E-7 score: 30.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..53
IPR037266	Photosystem II PsbL superfamily	SUPERFAMILY	161017	Photosystem II reaction center protein L, PsbL	coord: 48..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G007740.1	CmaCh12G007740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding