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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAATGAGGTACTAAACAACTATGCTGACATAATGCCAGAGAGCTTGCCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGAGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGATGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAGCTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTGCAGCTACTTTCTGCACGTTGATGAACCAAGTTTTCTACGAATACTTGCATCAGTTTGTCATAGTATACCTCGACGACATAGTGATTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAAAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATTTGCAGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACACTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATCTGAAAACAACCATGATGAGGGGTCCTGTCCTCGGATTGGTAGATGTTACAAAGCTATTTGAAATAGAAACAGACGCTTCTGACTTTGCCCTAGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTTCGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTGTCTCCGAAAAAGAAATGCTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAATATCTCTTGGGATCACAGTTCATAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCTGAATTCGACTTCAAGTTCGAACACAAAGCAGGGAAGAGTAATCAAGCAGCCGACGCACTAAGTCGGAACGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCGATGCGCGACATCATCAAGGAACATTTACATAAAGACCCATCGGCCAAAGCCGTCTTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGAGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCTCTAATAAAAAAAGGGTACTTCTGGCCAAACATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGGACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGGAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCGACGTTCATCCCCACTCCCAACTTATGCTCGGCCGAACTCACAGCTCAACTATTTTTCAAACACATTGTAAAGTTATGGGGTATTCCGTCGAGCATCATCAGTGATCGGGATGGCAGATTCATTGGGACATTCTGGACCGAGTTATTCGCCTTCTTGGGAACAACCTTAAACATCTCCTCGAGTTACCACCCTCAAACCGATGGTCAGACAGAACGGCTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTAG mRNA sequence ATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAATGAGGTACTAAACAACTATGCTGACATAATGCCAGAGAGCTTGCCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGAGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGATGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAGCTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTGCAGCTACTTTCTGCACGTTGATGAACCAAGTTTTCTACGAATACTTGCATCAGTTTGTCATAGTATACCTCGACGACATAGTGATTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAAAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATTTGCAGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACACTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATCTGAAAACAACCATGATGAGGGGTCCTGTCCTCGGATTGGTAGATGTTACAAAGCTATTTGAAATAGAAACAGACGCTTCTGACTTTGCCCTAGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTTCGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTGTCTCCGAAAAAGAAATGCTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAATATCTCTTGGGATCACAGTTCATAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCTGAATTCGACTTCAAGTTCGAACACAAAGCAGGGAAGAGTAATCAAGCAGCCGACGCACTAAGTCGGAACGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCGATGCGCGACATCATCAAGGAACATTTACATAAAGACCCATCGGCCAAAGCCGTCTTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGAGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCTCTAATAAAAAAAGGGTACTTCTGGCCAAACATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGGACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGGAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCGACGTTCATCCCCACTCCCAACTTATGCTCGGCCGAACTCACAGCTCAACTATTTTTCAAACACATTGTAAAGTTATGGGGTATTCCGTCGAGCATCATCAGTGATCGGGATGGCAGATTCATTGGGACATTCTGGACCGAGTTATTCGCCTTCTTGGGAACAACCTTAAACATCTCCTCGAGTTACCACCCTCAAACCGATGGTCAGACAGAACGGCTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTAG Coding sequence (CDS) ATGGCCATACCATTGATGGAAGTAACAACCACCGAAGAAACTGTCCCAAATGAAATCAATGAGGTACTAAACAACTATGCTGACATAATGCCAGAGAGCTTGCCCCAAACATTACCACCTCGTCGAGGCATTGATCACGAAATCGAACTCATCCCCGGGGTTAAACCGCCAGCGAAGAACGCATACCGGATGGCTCCGCCCGAGCTAGCCGAATTAAGGAAACAACTGGATGAGTTGCTGAAGGCGAGATTCATCCGCCCGGCAAAGGCACCCTACGGAGCCCCCGTACTGTTCCAGAAGAAGAAGGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGATGGTACGCAACAAATATCCACTGCCGATAATATCCGACTTGTTCGACCAGCTTCACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGGTATTACCAAGTACGTATTGCCGAAGGGGACGAGCCCAAGACGACGTGCGTAACAAGATATGGGGCCTTTGAATTCCTAGTAATGCCCTTTGGCTTGACAAACGCTGCAGCTACTTTCTGCACGTTGATGAACCAAGTTTTCTACGAATACTTGCATCAGTTTGTCATAGTATACCTCGACGACATAGTGATTTACAGCACAACCCTAGAGGAACACAAAGTGCACTTGAAGCTGGTGTTCGACAAGCTACGACAAAACCAACTGTATGTCAAGAAAGAGAAATGTGCATTCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAAATGTGGACAGATTAGTATGGATAGCGATAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTATCCGATTTGCAGTCCTTCTTAGGATTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACACTTGGTCGTGGTCAAATGATTGTCAAATGGCCTTTGAAGATCTGAAAACAACCATGATGAGGGGTCCTGTCCTCGGATTGGTAGATGTTACAAAGCTATTTGAAATAGAAACAGACGCTTCTGACTTTGCCCTAGGTGGGGTCCTTATTCAAGAAGGCCACCCCATCGCTTTCGAAAGTCGAAAGCTCAATGACGCCGAACGTAGATACACTGTCTCCGAAAAAGAAATGCTGGCAGTAGTCCATTGCCTTCGAGTCTGGAGACAATATCTCTTGGGATCACAGTTCATAGTGAAGACGGATAACAGCGCCATTTGCCACTTCTTTGATCAACCAAAATTGACGGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCTGAATTCGACTTCAAGTTCGAACACAAAGCAGGGAAGAGTAATCAAGCAGCCGACGCACTAAGTCGGAACGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATTCACTCAAGTAAGATCGATGGATCGATGCGCGACATCATCAAGGAACATTTACATAAAGACCCATCGGCCAAAGCCGTCTTCGAACTAGCTAAAGCTGGGAAAACACGACAGTTTTGGGTTGAGAGAGACCTTCTGATGACAAAAGGAAACAGATTGTATGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGTCGGACACCCTGGGTGGCAAAGAACATACGCTCTAATAAAAAAAGGGTACTTCTGGCCAAACATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGTCAACAGGACAAAGTCGAGAAAGCCAAAGTCTCAGGACTCTTGGAACCTCTACCTGTGCCGACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCTATCTTGGTTATCGTAGACCGATTCTCAAAATATGCGACGTTCATCCCCACTCCCAACTTATGCTCGGCCGAACTCACAGCTCAACTATTTTTCAAACACATTGTAAAGTTATGGGGTATTCCGTCGAGCATCATCAGTGATCGGGATGGCAGATTCATTGGGACATTCTGGACCGAGTTATTCGCCTTCTTGGGAACAACCTTAAACATCTCCTCGAGTTACCACCCTCAAACCGATGGTCAGACAGAACGGCTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCGTCGACGCTCGCCAGAAGAACTAG Protein sequence MAIPLMEVTTTEETVPNEINEVLNNYADIMPESLPQTLPPRRGIDHEIELIPGVKPPAKNAYRMAPPELAELRKQLDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQVFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLKKDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEGHPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFIVKTDNSAICHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDGSMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERDLLMTKGNRLYVPRTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSAELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERLNCLLEEYLRHFVDARQKN
Homology
BLAST of CmaCh12G007680 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 9.7e-122 Identity = 250/731 (34.20%), Postives = 398/731 (54.45%), Query Frame = 0
Query: 18 EINEVLNNYADIMPESLPQTLP-PRRGIDHEIELI-PGVKPPAKNAYRMAPPELAELRKQ 77
E+ ++ + DI E+ + LP P +G++ E+EL + P +N Y + P ++ + +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432
Query: 78 LDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQ 137
+++ LK+ IR +KA PV+F KK+GTLR+ +DY+ LNK + N YPLP+I L +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492
Query: 138 LHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQ 197
+ G+ FTKLDL+S Y+ +R+ +GDE K G FE+LVMP+G++ A A F +N
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552
Query: 198 VFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFL 257
+ E V+ Y+DDI+I+S + EH H+K V KL+ L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612
Query: 258 GHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLK 317
G+ + + + I + +WK P + +L+ FLG NY R+F+ S+ PL LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672
Query: 318 KDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEG---- 377
KD W W+ A E++K ++ PVL D +K +ETDASD A+G VL Q+
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732
Query: 378 -HPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFIVKTDN-SAICHFF 437
+P+ + S K++ A+ Y+VS+KEMLA++ L+ WR YL + F + TD+ + I
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792
Query: 438 DQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDG 497
++ + K+ ARWQ L +F+F+ ++ G +N ADALSR + I D
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET-----EPIPKDSEDN 852
Query: 498 SMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERD------------LLMTKGNRLYVP 557
S+ + + + D + V E K D LL+ +++ +P
Sbjct: 853 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLP 912
Query: 558 RTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVE 617
+L + +I++ H+ + HPG + +I + + W +R I +Y + C CQ +K
Sbjct: 913 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 972
Query: 618 KAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSA 677
K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDRFSK A +P +A
Sbjct: 973 NHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITA 1032
Query: 678 ELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTE 726
E TA++F + ++ +G P II+D D F W + + S Y PQTDGQTE
Sbjct: 1033 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1092
BLAST of CmaCh12G007680 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 9.7e-122 Identity = 250/731 (34.20%), Postives = 398/731 (54.45%), Query Frame = 0
Query: 18 EINEVLNNYADIMPESLPQTLP-PRRGIDHEIELI-PGVKPPAKNAYRMAPPELAELRKQ 77
E+ ++ + DI E+ + LP P +G++ E+EL + P +N Y + P ++ + +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432
Query: 78 LDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQ 137
+++ LK+ IR +KA PV+F KK+GTLR+ +DY+ LNK + N YPLP+I L +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492
Query: 138 LHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQ 197
+ G+ FTKLDL+S Y+ +R+ +GDE K G FE+LVMP+G++ A A F +N
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552
Query: 198 VFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFL 257
+ E V+ Y+DDI+I+S + EH H+K V KL+ L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612
Query: 258 GHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLK 317
G+ + + + I + +WK P + +L+ FLG NY R+F+ S+ PL LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672
Query: 318 KDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEG---- 377
KD W W+ A E++K ++ PVL D +K +ETDASD A+G VL Q+
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732
Query: 378 -HPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFIVKTDN-SAICHFF 437
+P+ + S K++ A+ Y+VS+KEMLA++ L+ WR YL + F + TD+ + I
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792
Query: 438 DQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDG 497
++ + K+ ARWQ L +F+F+ ++ G +N ADALSR + I D
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET-----EPIPKDSEDN 852
Query: 498 SMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERD------------LLMTKGNRLYVP 557
S+ + + + D + V E K D LL+ +++ +P
Sbjct: 853 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLP 912
Query: 558 RTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVE 617
+L + +I++ H+ + HPG + +I + + W +R I +Y + C CQ +K
Sbjct: 913 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 972
Query: 618 KAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSA 677
K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDRFSK A +P +A
Sbjct: 973 NHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITA 1032
Query: 678 ELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTE 726
E TA++F + ++ +G P II+D D F W + + S Y PQTDGQTE
Sbjct: 1033 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1092
BLAST of CmaCh12G007680 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 9.7e-122 Identity = 250/731 (34.20%), Postives = 398/731 (54.45%), Query Frame = 0
Query: 18 EINEVLNNYADIMPESLPQTLP-PRRGIDHEIELI-PGVKPPAKNAYRMAPPELAELRKQ 77
E+ ++ + DI E+ + LP P +G++ E+EL + P +N Y + P ++ + +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432
Query: 78 LDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQ 137
+++ LK+ IR +KA PV+F KK+GTLR+ +DY+ LNK + N YPLP+I L +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492
Query: 138 LHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQ 197
+ G+ FTKLDL+S Y+ +R+ +GDE K G FE+LVMP+G++ A A F +N
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552
Query: 198 VFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFL 257
+ E V+ Y+DDI+I+S + EH H+K V KL+ L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612
Query: 258 GHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLK 317
G+ + + + I + +WK P + +L+ FLG NY R+F+ S+ PL LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672
Query: 318 KDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEG---- 377
KD W W+ A E++K ++ PVL D +K +ETDASD A+G VL Q+
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732
Query: 378 -HPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFIVKTDN-SAICHFF 437
+P+ + S K++ A+ Y+VS+KEMLA++ L+ WR YL + F + TD+ + I
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792
Query: 438 DQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDG 497
++ + K+ ARWQ L +F+F+ ++ G +N ADALSR + I D
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET-----EPIPKDSEDN 852
Query: 498 SMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERD------------LLMTKGNRLYVP 557
S+ + + + D + V E K D LL+ +++ +P
Sbjct: 853 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLP 912
Query: 558 RTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVE 617
+L + +I++ H+ + HPG + +I + + W +R I +Y + C CQ +K
Sbjct: 913 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 972
Query: 618 KAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSA 677
K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDRFSK A +P +A
Sbjct: 973 NHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITA 1032
Query: 678 ELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTE 726
E TA++F + ++ +G P II+D D F W + + S Y PQTDGQTE
Sbjct: 1033 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1092
BLAST of CmaCh12G007680 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 9.7e-122 Identity = 250/731 (34.20%), Postives = 398/731 (54.45%), Query Frame = 0
Query: 18 EINEVLNNYADIMPESLPQTLP-PRRGIDHEIELI-PGVKPPAKNAYRMAPPELAELRKQ 77
E+ ++ + DI E+ + LP P +G++ E+EL + P +N Y + P ++ + +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432
Query: 78 LDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQ 137
+++ LK+ IR +KA PV+F KK+GTLR+ +DY+ LNK + N YPLP+I L +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492
Query: 138 LHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQ 197
+ G+ FTKLDL+S Y+ +R+ +GDE K G FE+LVMP+G++ A A F +N
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552
Query: 198 VFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFL 257
+ E V+ Y+DDI+I+S + EH H+K V KL+ L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612
Query: 258 GHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLK 317
G+ + + + I + +WK P + +L+ FLG NY R+F+ S+ PL LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672
Query: 318 KDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEG---- 377
KD W W+ A E++K ++ PVL D +K +ETDASD A+G VL Q+
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732
Query: 378 -HPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFIVKTDN-SAICHFF 437
+P+ + S K++ A+ Y+VS+KEMLA++ L+ WR YL + F + TD+ + I
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792
Query: 438 DQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDG 497
++ + K+ ARWQ L +F+F+ ++ G +N ADALSR + I D
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET-----EPIPKDSEDN 852
Query: 498 SMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERD------------LLMTKGNRLYVP 557
S+ + + + D + V E K D LL+ +++ +P
Sbjct: 853 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLP 912
Query: 558 RTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVE 617
+L + +I++ H+ + HPG + +I + + W +R I +Y + C CQ +K
Sbjct: 913 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 972
Query: 618 KAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSA 677
K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDRFSK A +P +A
Sbjct: 973 NHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITA 1032
Query: 678 ELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTE 726
E TA++F + ++ +G P II+D D F W + + S Y PQTDGQTE
Sbjct: 1033 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1092
BLAST of CmaCh12G007680 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 9.7e-122 Identity = 250/731 (34.20%), Postives = 398/731 (54.45%), Query Frame = 0
Query: 18 EINEVLNNYADIMPESLPQTLP-PRRGIDHEIELI-PGVKPPAKNAYRMAPPELAELRKQ 77
E+ ++ + DI E+ + LP P +G++ E+EL + P +N Y + P ++ + +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432
Query: 78 LDELLKARFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVMVRNKYPLPIISDLFDQ 137
+++ LK+ IR +KA PV+F KK+GTLR+ +DY+ LNK + N YPLP+I L +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492
Query: 138 LHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAAATFCTLMNQ 197
+ G+ FTKLDL+S Y+ +R+ +GDE K G FE+LVMP+G++ A A F +N
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552
Query: 198 VFYEYLHQFVIVYLDDIVIYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFL 257
+ E V+ Y+DDI+I+S + EH H+K V KL+ L + + KC F Q+ + F+
Sbjct: 553 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 612
Query: 258 GHVVKCGQISMDSDKIKAIQEWKVPTSVSDLQSFLGLANYYRRFVEGFSRRAAPLTELLK 317
G+ + + + I + +WK P + +L+ FLG NY R+F+ S+ PL LLK
Sbjct: 613 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 672
Query: 318 KDHTWSWSNDCQMAFEDLKTTMMRGPVLGLVDVTKLFEIETDASDFALGGVLIQEG---- 377
KD W W+ A E++K ++ PVL D +K +ETDASD A+G VL Q+
Sbjct: 673 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDK 732
Query: 378 -HPIAFESRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFIVKTDN-SAICHFF 437
+P+ + S K++ A+ Y+VS+KEMLA++ L+ WR YL + F + TD+ + I
Sbjct: 733 YYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRIT 792
Query: 438 DQPKLTAKQ-ARWQESLAEFDFKFEHKAGKSNQAADALSRNGEHAALCMLAHIHSSKIDG 497
++ + K+ ARWQ L +F+F+ ++ G +N ADALSR + I D
Sbjct: 793 NESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET-----EPIPKDSEDN 852
Query: 498 SMRDIIKEHLHKDPSAKAVFELAKAGKTRQFWVERD------------LLMTKGNRLYVP 557
S+ + + + D + V E K D LL+ +++ +P
Sbjct: 853 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLP 912
Query: 558 RTGELRKKLIQECHDTLWVGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVE 617
+L + +I++ H+ + HPG + +I + + W +R I +Y + C CQ +K
Sbjct: 913 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 972
Query: 618 KAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPNLCSA 677
K G L+P+P RPWES+S+DFIT LP+ Y+A+ V+VDRFSK A +P +A
Sbjct: 973 NHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITA 1032
Query: 678 ELTAQLFFKHIVKLWGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTE 726
E TA++F + ++ +G P II+D D F W + + S Y PQTDGQTE
Sbjct: 1033 EQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTE 1092
BLAST of CmaCh12G007680 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 97.1 bits (240), Expect = 6.5e-20 Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 0
Query: 225 HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLG--HVVKCGQISMDSDKIKAIQEWKVPTS 284
HL +V Q+Q Y ++KCAF Q I +LG H++ +S D K++A+ W P +
Sbjct: 3 HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62
Query: 285 VSDLQSFLGLANYYRRFVEGFSRRAAPLTELLKKDHTWSWSNDCQMAFEDLKTTMMRGPV 344
++L+ FLGL YYRRFV+ + + PLTELLKK ++ W+ +AF+ LK + PV
Sbjct: 63 TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122
Query: 345 LGLVDV 349
L L D+
Sbjct: 123 LALPDL 127
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P0CT41 | 9.7e-122 | 34.20 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... | [more] |
| P0CT34 | 9.7e-122 | 34.20 | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT35 | 9.7e-122 | 34.20 | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT36 | 9.7e-122 | 34.20 | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| P0CT37 | 9.7e-122 | 34.20 | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ATMG00860.1 | 6.5e-20 | 39.68 | DNA/RNA polymerases superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 374..394 |
| None | No IPR available | GENE3D | 3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | coord: 44..184
e-value: 4.1E-87
score: 292.9 |
| None | No IPR available | GENE3D | 1.10.340.70 | | coord: 504..592
e-value: 6.3E-21
score: 76.4 |
| None | No IPR available | PANTHER | PTHR34072 | ENZYMATIC POLYPROTEIN-RELATED | coord: 55..718 |
| None | No IPR available | CDD | cd01647 | RT_LTR | coord: 84..259
e-value: 1.4194E-86
score: 268.309 |
| None | No IPR available | CDD | cd09274 | RNase_HI_RT_Ty3 | coord: 353..467
e-value: 9.67581E-58
score: 190.011 |
| IPR036397 | Ribonuclease H superfamily | GENE3D | 3.30.420.10 | | coord: 602..734
e-value: 2.7E-32
score: 113.6 |
| IPR041588 | Integrase zinc-binding domain | PFAM | PF17921 | Integrase_H2C2 | coord: 538..592
e-value: 6.8E-21
score: 74.1 |
| IPR000477 | Reverse transcriptase domain | PFAM | PF00078 | RVT_1 | coord: 100..258
e-value: 7.3E-28
score: 97.6 |
| IPR000477 | Reverse transcriptase domain | PROSITE | PS50878 | RT_POL | coord: 80..259
score: 13.569888 |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | GENE3D | 3.30.70.270 | | coord: 268..357
e-value: 7.6E-29
score: 101.6 |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | GENE3D | 3.30.70.270 | | coord: 124..259
e-value: 4.1E-87
score: 292.9 |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain | PFAM | PF17919 | RT_RNaseH_2 | coord: 322..416
e-value: 5.2E-31
score: 106.6 |
| IPR001584 | Integrase, catalytic core | PROSITE | PS50994 | INTEGRASE | coord: 607..734
score: 19.43248 |
| IPR012337 | Ribonuclease H-like superfamily | SUPERFAMILY | 53098 | Ribonuclease H-like | coord: 604..732 |
| IPR043502 | DNA/RNA polymerase superfamily | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 22..453 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
| biological_process |
GO:0006508 |
proteolysis |
| biological_process |
GO:0006278 |
RNA-dependent DNA biosynthetic process |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0004519 |
endonuclease activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003964 |
RNA-directed DNA polymerase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
|
