CmaCh12G007590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G007590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein S3
Location	Cma_Chr12: 4732523 .. 4733402 (-)
RNA-Seq Expression	CmaCh12G007590
Synteny	CmaCh12G007590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATAATGAGAAAAAGAAGAATTCCATATGGGTACAACTCTTATTTGAACGAAGTGCAAAAAATGCGGTCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAGTGAGTCAGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTTCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTTAGGTCGATCAGAAGGAGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATTTCATATAAAAAACAAAAAAAGGAACGTGTTATATCCGAAACATACGAAATATATTAAATCTCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGACGGTACATAACTTGGTTTTGGAAGATATGGCACTTAAAGTTATAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCATCTCGTAGGGCTCTAATCAGACAATTCCATCGTGCTATGAGTGGACAATTCCGAAGAAATGGTCAAATATGGGTCAGAGTTCTCGCGGATCTCCCTATTACCGGGAACTACAGAAGTCAGAATGAGAAGAGGAAAAGGAAATCCTACGAGTTGGATTGCTCATGTGTCCACGGGACAAATCCCATTTGA

mRNA sequence

ATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATAATGAGAAAAAGAAGAATTCCATATGGGTACAACTCTTATTTGAACGAAGTGCAAAAAATGCGGTCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAGTGAGTCAGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTTCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTTAGGTCGATCAGAAGGAGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCATCTCGTAGGGCTCTAATCAGACAATTCCATCGTGCTATGAGTGGACAATTCCGAAGAAATGGTCAAATATGGGTCAGAGTTCTCGCGGATCTCCCTATTACCGGGAACTACAGAAGTCAGAATGAGAAGAGGAAAAGGAAATCCTACGAGTTGGATTGCTCATGTGTCCACGGGACAAATCCCATTTGA

Coding sequence (CDS)

ATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATAATGAGAAAAAGAAGAATTCCATATGGGTACAACTCTTATTTGAACGAAGTGCAAAAAATGCGGTCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAGTGAGTCAGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTTCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTTAGGTCGATCAGAAGGAGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCATCTCGTAGGGCTCTAATCAGACAATTCCATCGTGCTATGAGTGGACAATTCCGAAGAAATGGTCAAATATGGGTCAGAGTTCTCGCGGATCTCCCTATTACCGGGAACTACAGAAGTCAGAATGAGAAGAGGAAAAGGAAATCCTACGAGTTGGATTGCTCATGTGTCCACGGGACAAATCCCATTTGA

Protein sequence

MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIRICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITGNYRSQNEKRKRKSYELDCSCVHGTNPI

Homology

[Close]

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot
Match: P27754 (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-80
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFIDLGGIGELIKGIE+MIEII+R RRIPYGYNSYLNEV+KMRSLLSNR
Sbjct: 375 MGKDKVMELIEKFIDLGGIGELIKGIEIMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNR 434

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           TKTNT+ ESVKIKSVYQSASPIAQDISFQ RNK RSFRSI ++IVKDI LVMKKGVEGIR
Sbjct: 435 TKTNTIIESVKIKSVYQSASPIAQDISFQPRNKRRSFRSIFSQIVKDIPLVMKKGVEGIR 494

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 171
           ICC GRS+GAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV
Sbjct: 495 ICCSGRSKGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 544

[Close]

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot
Match: Q04716 (Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-77
Identity = 152/170 (89.41%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFIDL  IGELI+GIEMMIEII+R RRIPYGYN YLNEV+KMRSLL NR
Sbjct: 374 MGKDKVMELIEKFIDLNRIGELIRGIEMMIEIILRNRRIPYGYNYYLNEVKKMRSLLYNR 433

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSASPIAQDISFQ RNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 434 TNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 493

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 171
           ICC GR EGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI GVKV
Sbjct: 494 ICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKV 543

[Close]

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot
Match: P27928 (Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.9e-74
Identity = 151/176 (85.80%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFIDLG IG+LIKGIEMMIEII+RKRRIPYGYNSYLNEVQKMRS LSNR
Sbjct: 371 MGKDKVMELIEKFIDLGRIGKLIKGIEMMIEIILRKRRIPYGYNSYLNEVQKMRSFLSNR 430

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSAS IAQDISFQLRN   SFRSI +KIVKDI L+M KGVEGIR
Sbjct: 431 TNTNTLIESVKIKSVYQSASLIAQDISFQLRNNPISFRSIFSKIVKDIPLIMPKGVEGIR 490

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKVAGRLSY 177
           ICC GR  GAEIARTECGKYGKTS NVFNQKIDYAPAEVSTR GI GVKV  R+SY
Sbjct: 491 ICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYAPAEVSTRDGISGVKV--RISY 544

[Close]

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot
Match: P46773 (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-70
Identity = 146/176 (82.95%), Postives = 153/176 (86.93%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFI LG IG+LIKGIEMMIEII+RKR IPYGYNSYLNEVQKMRS LSNR
Sbjct: 350 MGKDKVMELIEKFIYLGRIGKLIKGIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNR 409

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSAS IAQDISFQL N   SFRSI ++IVKDI L+M KGVEGIR
Sbjct: 410 TNTNTLIESVKIKSVYQSASLIAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIR 469

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKVAGRLSY 177
           ICC GR  GAEIARTECGKYGKTS NVFNQKIDYA AEVSTR GI GVKV  R+SY
Sbjct: 470 ICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYALAEVSTRNGISGVKV--RISY 523

[Close]

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot
Match: P49386 (Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.6e-60
Identity = 131/171 (76.61%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           +GKDKV+ELIEKF DLGGI ELIK I+MMIEII+RKR IPYGYNSY NEVQKMRS LSNR
Sbjct: 370 LGKDKVMELIEKFKDLGGIEELIKVIDMMIEIILRKRGIPYGYNSYFNEVQKMRSFLSNR 429

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T T TL ESVKIKSVYQSAS IAQDISFQL+NK RS  SI  KIVK+I     K VEGIR
Sbjct: 430 TNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSTHSIFAKIVKEI----PKRVEGIR 489

Query: 121 ICCLGR-SEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 171
           IC  GR  + AE A+T+C K+ KTSRNVFNQKIDYAPAEVSTRYGI GVKV
Sbjct: 490 ICFSGRLKDAAEKAQTKCYKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKV 536

[Close]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL
Match: A0A5N6L0R0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025339 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.2e-99
Identity = 198/237 (83.54%), Postives = 208/237 (87.76%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKD+VIELIEKFIDLGGIGELIKGIEMMIEII+R R IPYGYNSYLNEV+KMRSLLSNR
Sbjct: 347 MGKDRVIELIEKFIDLGGIGELIKGIEMMIEIILRNRIIPYGYNSYLNEVKKMRSLLSNR 406

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           TKTNTL ESVKIKSVYQSASPIAQDISF+LRNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 407 TKTNTLIESVKIKSVYQSASPIAQDISFELRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 466

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGIL-------------- 180
           ICC GRSEGAEIARTECGKYGKTSRN+FNQKIDYAPAEVSTRYGIL              
Sbjct: 467 ICCSGRSEGAEIARTECGKYGKTSRNIFNQKIDYAPAEVSTRYGILGRCSRGCKPDGTQL 526

Query: 181 -----GVKV--AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                G+K   AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 527 GFGRYGIKSCRAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 583

[Close]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL
Match: B9TAP3 (60S ribosomal protein L16, putative OS=Ricinus communis OX=3988 GN=RCOM_2145580 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 6.4e-97
Identity = 194/237 (81.86%), Postives = 206/237 (86.92%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFI+LGGIGELIKGIEMMIEII+R RRIPYGYNSYLNE++KMRSLLSNR
Sbjct: 373 MGKDKVMELIEKFINLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEMKKMRSLLSNR 432

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ES+K+KSVYQSASPIAQDISFQLRNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 433 TNTNTLIESIKMKSVYQSASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 492

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI-----LGVKV----- 180
           ICC GR EGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI      G K+     
Sbjct: 493 ICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKLDGTQL 552

Query: 181 -----------AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 553 GFGRYGTKSCKAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 609

[Close]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL
Match: A0A7J0D6P3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0001640 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.2e-96
Identity = 192/237 (81.01%), Postives = 204/237 (86.08%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           +GKDKV+ELI+KFI+LGGIGELIKGIE++IEII+RKRRIPYGYN YLNEV+KMRSLLSNR
Sbjct: 126 LGKDKVMELIDKFIELGGIGELIKGIEILIEIILRKRRIPYGYNYYLNEVKKMRSLLSNR 185

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           TKTNTL ESVKIKSVYQSASPIAQDISFQ R KTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 186 TKTNTLIESVKIKSVYQSASPIAQDISFQPRKKTRSFRSIFSKIVKDIPLVMKKGVEGIR 245

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILG------------- 180
           ICC GRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI G             
Sbjct: 246 ICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKPDGTQL 305

Query: 181 --------VKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 306 GFGRYGTQSCRAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 362

[Close]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL
Match: A0A5C7GR71 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027810 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.6e-95
Identity = 193/237 (81.43%), Postives = 201/237 (84.81%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFI+LGGIGELIKGIEMMIEII+R RRIPYGYNSYLNEV+KMRSLLSNR
Sbjct: 383 MGKDKVMELIEKFINLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNR 442

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSASPIAQDISFQLRNK RSFRSI +KIVK+I LVM KGVEGIR
Sbjct: 443 TNTNTLIESVKIKSVYQSASPIAQDISFQLRNKKRSFRSIFSKIVKNIPLVMNKGVEGIR 502

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILG------------- 180
           ICC GR EGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI G             
Sbjct: 503 ICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKPDGTQL 562

Query: 181 --------VKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 563 GFGRYGTKSYKAGRLSYRAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITG 619

[Close]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL
Match: A0A2J6K897 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38040 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.5e-95
Identity = 195/253 (77.08%), Postives = 203/253 (80.24%), Query Frame = 0


Query: 3   KDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNRTK 62
           KDKV+ELIEKFIDLGGIGELIKGIEMMIEII+R RRIPYGYN YLNEV+KMRSLLSNRTK
Sbjct: 391 KDKVMELIEKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNFYLNEVKKMRSLLSNRTK 450

Query: 63  TNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIRIC 122
           TNTL ESVKIKSVYQSASPIAQDISFQ RNKTRSFRSI ++IVKDI LVMKKGVEGIRIC
Sbjct: 451 TNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSQIVKDIRLVMKKGVEGIRIC 510

Query: 123 CLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV------------ 182
           C GRSEGAEIARTECGKYGKTS NVFNQKIDYAPAEVSTRYGI GVKV            
Sbjct: 511 CSGRSEGAEIARTECGKYGKTSSNVFNQKIDYAPAEVSTRYGISGVKVWISYSQKERGRA 570

Query: 183 ---------------------------AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQ 217
                                      AGRLSYRAIEA+RRA+I QFHR MSGQFRRNG+
Sbjct: 571 ISETCSRGCKPDGTRLGFGRYGTKSLRAGRLSYRAIEAARRAIIGQFHRTMSGQFRRNGK 630

[Close]

BLAST of CmaCh12G007590 vs. NCBI nr
Match: KAF8364943.1 (hypothetical protein HHK36_033022 [Tetracentron sinense] >KAF8376877.1 hypothetical protein HHK36_031382 [Tetracentron sinense])

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-99
Identity = 198/232 (85.34%), Postives = 207/232 (89.22%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGK+KV+ELI+KFIDLGGIGELIKGIEMMIEII+RKRRIPYGYNSYLNEV+KMRSLLSNR
Sbjct: 373 MGKEKVMELIDKFIDLGGIGELIKGIEMMIEIILRKRRIPYGYNSYLNEVKKMRSLLSNR 432

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSASPIAQDISFQ RNKTRSFRSI ++IVKDI LVMKKGVEGIR
Sbjct: 433 TNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSQIVKDIPLVMKKGVEGIR 492

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV---------- 180
           ICC GRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI GVKV          
Sbjct: 493 ICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVRISYSKKNKG 552

Query: 181 ------AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                 AGRLSYRAIEA+RRA I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 553 RAISETAGRLSYRAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITG 604

[Close]

BLAST of CmaCh12G007590 vs. NCBI nr
Match: KAB8477473.1 (hypothetical protein FH972_025339 [Carpinus fangiana])

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98
Identity = 198/237 (83.54%), Postives = 208/237 (87.76%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKD+VIELIEKFIDLGGIGELIKGIEMMIEII+R R IPYGYNSYLNEV+KMRSLLSNR
Sbjct: 347 MGKDRVIELIEKFIDLGGIGELIKGIEMMIEIILRNRIIPYGYNSYLNEVKKMRSLLSNR 406

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           TKTNTL ESVKIKSVYQSASPIAQDISF+LRNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 407 TKTNTLIESVKIKSVYQSASPIAQDISFELRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 466

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGIL-------------- 180
           ICC GRSEGAEIARTECGKYGKTSRN+FNQKIDYAPAEVSTRYGIL              
Sbjct: 467 ICCSGRSEGAEIARTECGKYGKTSRNIFNQKIDYAPAEVSTRYGILGRCSRGCKPDGTQL 526

Query: 181 -----GVKV--AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                G+K   AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 527 GFGRYGIKSCRAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 583

[Close]

BLAST of CmaCh12G007590 vs. NCBI nr
Match: XP_030965048.1 (uncharacterized protein LOC115986320 [Quercus lobata])

HSP 1 Score: 367.5 bits (942), Expect = 9.1e-98
Identity = 197/237 (83.12%), Postives = 205/237 (86.50%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKD+V+ELIEKFIDLGGIGE IKGIEMMIEII+R RRIPYGYNSYLNEV+KMRSLLSNR
Sbjct: 375 MGKDRVMELIEKFIDLGGIGEFIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNR 434

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           TKTNTL ESVKIKSVYQSAS IAQDISFQLRNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 435 TKTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 494

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILG------------- 180
           ICC GRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILG             
Sbjct: 495 ICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGRCRRGCKPDGTQL 554

Query: 181 --------VKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 555 GFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 611

[Close]

BLAST of CmaCh12G007590 vs. NCBI nr
Match: KAF3452254.1 (hypothetical protein FNV43_RR08352 [Rhamnella rubrinervis])

HSP 1 Score: 365.5 bits (937), Expect = 3.5e-97
Identity = 195/237 (82.28%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFIDLGGIGEL+KGIEMMIEII+R RRIPYGYNSYLNEV+KMRSLLSNR
Sbjct: 338 MGKDKVMELIEKFIDLGGIGELVKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNR 397

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ESVKIKSVYQSASPIAQDISFQLRNKTRSFRSI +KIVKDI L+MKKGVEGIR
Sbjct: 398 TNTNTLIESVKIKSVYQSASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLIMKKGVEGIR 457

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILG------------- 180
           ICC GR EGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI G             
Sbjct: 458 ICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSKGCKPDGTQL 517

Query: 181 --------VKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 518 GFGRYGTQSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITG 574

[Close]

BLAST of CmaCh12G007590 vs. NCBI nr
Match: EEF27073.1 (60S ribosomal protein L16, putative [Ricinus communis])

HSP 1 Score: 363.6 bits (932), Expect = 1.3e-96
Identity = 194/237 (81.86%), Postives = 206/237 (86.92%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           MGKDKV+ELIEKFI+LGGIGELIKGIEMMIEII+R RRIPYGYNSYLNE++KMRSLLSNR
Sbjct: 373 MGKDKVMELIEKFINLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEMKKMRSLLSNR 432

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T TNTL ES+K+KSVYQSASPIAQDISFQLRNKTRSFRSI +KIVKDI LVMKKGVEGIR
Sbjct: 433 TNTNTLIESIKMKSVYQSASPIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIR 492

Query: 121 ICCLGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI-----LGVKV----- 180
           ICC GR EGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGI      G K+     
Sbjct: 493 ICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGRCSRGCKLDGTQL 552

Query: 181 -----------AGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
                      AGRLSYRAIEA+RRA+I QFHRAMSGQFRRNG+IWVRVLADLPITG
Sbjct: 553 GFGRYGTKSCKAGRLSYRAIEAARRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITG 609

[Close]

BLAST of CmaCh12G007590 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 228.0 bits (580), Expect = 8.0e-60
Identity = 127/171 (74.27%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 1   MGKDKVIELIEKFIDLGGIGELIKGIEMMIEIIMRKRRIPYGYNSYLNEVQKMRSLLSNR 60
           +GKDK++ELIEK  +LGGI ELIK I+MMIEII+RKR IPY YNSY  EV+KMRS LSNR
Sbjct: 371 VGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNR 430

Query: 61  TKTNTLSESVKIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIR 120
           T T TL ESVKIKSVYQSASPIAQDISFQL+NK RSF SI  KIVK+I     KGVEGIR
Sbjct: 431 TNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEI----PKGVEGIR 490

Query: 121 ICCLGR-SEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 171
           IC  GR  + AE A+T+C K+ KTSRNVFN KIDYAPAEVSTRYGI GVKV
Sbjct: 491 ICFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKV 537

[Close]

BLAST of CmaCh12G007590 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 162 RYGILGVKVAGRLSYRAIEASRRALIRQFHRAMSGQFRRNGQIWVRVLADLPITG 217
           RYG    K AGRLSYRAIEA+RRA+I  FHRAMSGQFRRNG+IWVRV ADLPITG
Sbjct: 67  RYGTKSCK-AGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITG 120

[Close]

BLAST of CmaCh12G007590 vs. TAIR 10
Match: ATCG00800.1 (structural constituent of ribosome )

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 71  KIKSVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDISLVMKKGVEGIRICCLGRSEGA 130
           +I + Y   + +A+ I+ QL+N+  SFR  + K    I L  +   +GI++   GR +G 
Sbjct: 116 RISNPYGDPNILAEFIAGQLKNRV-SFRKAMKKA---IELTEQANTKGIQVQIAGRIDGK 175

Query: 131 EIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKV 171
           EIAR E  + G+        KIDY    V T YG+LG+K+
Sbjct: 176 EIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKI 211

The following BLAST results are available for this feature:

BLAST of CmaCh12G007590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27754	1.4e-80	91.18	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3...	[more]
Q04716	1.4e-77	89.41	Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=...	[more]
P27928	1.9e-74	85.80	Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1	[more]
P46773	3.7e-70	82.95	Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P49386	4.6e-60	76.61	Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1	[more]

BLAST of CmaCh12G007590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6L0R0	5.2e-99	83.54	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025339 PE=3 SV=1	[more]
B9TAP3	6.4e-97	81.86	60S ribosomal protein L16, putative OS=Ricinus communis OX=3988 GN=RCOM_2145580 ...	[more]
A0A7J0D6P3	9.2e-96	81.01	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0001640 PE=3 SV=1	[more]
A0A5C7GR71	1.6e-95	81.43	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027810 PE=3 SV=1	[more]
A0A2J6K897	3.5e-95	77.08	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38040 PE=3 SV=1	[more]

BLAST of CmaCh12G007590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8364943.1	1.3e-99	85.34	hypothetical protein HHK36_033022 [Tetracentron sinense] >KAF8376877.1 hypotheti...	[more]
KAB8477473.1	1.1e-98	83.54	hypothetical protein FH972_025339 [Carpinus fangiana]	[more]
XP_030965048.1	9.1e-98	83.12	uncharacterized protein LOC115986320 [Quercus lobata]	[more]
KAF3452254.1	3.5e-97	82.28	hypothetical protein FNV43_RR08352 [Rhamnella rubrinervis]	[more]
EEF27073.1	1.3e-96	81.86	60S ribosomal protein L16, putative [Ricinus communis]	[more]

BLAST of CmaCh12G007590 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00090.1	8.0e-60	74.27	structural constituent of ribosome;protein binding	[more]
ATMG00080.1	2.2e-17	80.00	ribosomal protein L16	[more]
ATCG00800.1	1.9e-08	35.00	structural constituent of ribosome	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 198..227 score: 30.67 coord: 174..185 score: 57.0
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 94..170 e-value: 4.6E-18 score: 65.5
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 74..173 e-value: 5.7E-27 score: 96.0
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 74..170
IPR044954	Ribosomal protein S3, mitochondrial, plant	PANTHER	PTHR35928	RIBOSOMAL PROTEIN S3, MITOCHONDRIAL	coord: 3..162
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 133..167
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 199..210
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 168..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G007590.1	CmaCh12G007590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome