CmaCh12G007100 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G007100
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 3951372 .. 3951916 (-)
RNA-Seq ExpressionCmaCh12G007100
SyntenyCmaCh12G007100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAATTCTCGCTTCCAAACAAAACGAATTATGGGACTTGCAGGAGCAGCTTCAGACTTCGGCTCACGCATGCGCCCCAGTTGGCTAACCCAACTCCTCTCAATACGACGTCGTCCTCCACTTCTACCCATTTCTCCCTCACTTTGACCGACATTCCTCCTCTATATTCGGATCTCTTCTCCAATTTCCCTCCCGCTCCTTCATTCCCTCCGGCCATCGACGGAACGCGGCGGCGGCTTGCACCAGTGATCTCACTTAATCCTCGACAACTTGTTCATCGGTGAGCGATCTGGCGATAGATCCGAGGATCTGGAGCTTTTTCGCCGGATAAACTAGAGCTTTGAGTCGTATCTACTTCTTTATTTTATTTCTTTTTATCGATGATCCCGTAACCTCTTGACTGAACTGGAATTTGGATAATCGGTGATTGCTTCGAAGCTTGTAGCTTCTATTTATCCCCCATTTTACCTAAGGTTTTCAATTCTGAAGGGAGGCTCGTGAAGTGAACAAGAAATCTATCTTGTATTGGGCGGAGTGCTAG

mRNA sequence

ATGACAAAATTCTCGCTTCCAAACAAAACGAATTATGGGACTTGCAGGAGCAGCTTCAGACTTCGGCTCACGCATGCGCCCCAGTTGGCTAACCCAACTCCTCTCAATACGACGTCGTCCTCCACTTCTACCCATTTCTCCCTCACTTTGACCGACATTCCTCCTCTATATTCGGATCTCTTCTCCAATTTCCCTCCCGCTCCTTCATTCCCTCCGGCCATCGACGGAACGCGGCGGCGGCTTGCACCAGTGATCTCACTTAATCCTCGACAACTTGTTCATCGGGAGGCTCGTGAAGTGAACAAGAAATCTATCTTGTATTGGGCGGAGTGCTAG

Coding sequence (CDS)

ATGACAAAATTCTCGCTTCCAAACAAAACGAATTATGGGACTTGCAGGAGCAGCTTCAGACTTCGGCTCACGCATGCGCCCCAGTTGGCTAACCCAACTCCTCTCAATACGACGTCGTCCTCCACTTCTACCCATTTCTCCCTCACTTTGACCGACATTCCTCCTCTATATTCGGATCTCTTCTCCAATTTCCCTCCCGCTCCTTCATTCCCTCCGGCCATCGACGGAACGCGGCGGCGGCTTGCACCAGTGATCTCACTTAATCCTCGACAACTTGTTCATCGGGAGGCTCGTGAAGTGAACAAGAAATCTATCTTGTATTGGGCGGAGTGCTAG

Protein sequence

MTKFSLPNKTNYGTCRSSFRLRLTHAPQLANPTPLNTTSSSTSTHFSLTLTDIPPLYSDLFSNFPPAPSFPPAIDGTRRRLAPVISLNPRQLVHREAREVNKKSILYWAEC
Homology
[Close]
BLAST of CmaCh12G007100 vs. NCBI nr
Match: KAG6585812.1 (hypothetical protein SDJN03_18545, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 3   KFSLPNKTNYGTCRSSFRLRLTHAPQLANPTPLNTTSSSTSTHFSLTLTDIPPLYSDL-- 62
           K     + NYG+C SSFRLRLTHAPQLANP PLNTTS S+STHFSL LTDIPPLYSDL  
Sbjct: 78  KILASKQNNYGSCGSSFRLRLTHAPQLANPIPLNTTSFSSSTHFSLALTDIPPLYSDLFG 137

Query: 63  FSNFPPAPSFPPAIDGTRRRLAPVISLNPRQLVHR 96
           FSNFPPAPSFPPAI GTRRRLAPVISLNP +LVHR
Sbjct: 138 FSNFPPAPSFPPAIHGTRRRLAPVISLNPPKLVHR 172

[Close]
BLAST of CmaCh12G007100 vs. NCBI nr
Match: KAG7020744.1 (hypothetical protein SDJN02_17432, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 3   KFSLPNKTNYGTCRSSFRLRLTHAPQLANPTPLNTTSSSTSTHFSLTLTDIPPLYSDL-- 62
           K     + NYG+C SSFRLRLTHAPQLANP PLNTTS S+STHFSL LTDIPPLYSDL  
Sbjct: 47  KILASKQNNYGSCGSSFRLRLTHAPQLANPIPLNTTSFSSSTHFSLALTDIPPLYSDLFG 106

Query: 63  FSNFPPAPSFPPAIDGTRRRLAPVISLNPRQLVHR 96
           FSNFPPAPSFPPAI GTRRRLAPVISLNP +LVHR
Sbjct: 107 FSNFPPAPSFPPAIHGTRRRLAPVISLNPPKLVHR 141

The following BLAST results are available for this feature:
BLAST of CmaCh12G007100 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007100 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585812.13.0e-3281.05hypothetical protein SDJN03_18545, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020744.13.0e-3281.05hypothetical protein SDJN02_17432, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh12G007100 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007100.1CmaCh12G007100.1mRNA