CmaCh12G007070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G007070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein At5g39250-like
Location	Cma_Chr12: 3907640 .. 3908508 (-)
RNA-Seq Expression	CmaCh12G007070
Synteny	CmaCh12G007070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGGGAAATTTTGAATCTAGTTTTTCCTTTGTTGGACGATGTGGACCTTGCTTCATGCATGGCAGTATCCAGACAGTGGAGAGACGCAGCTCGAGATGATTACTTTTGGAAATGTTTGTGCGCTAAGAGGTGGCCTTCAACCTACAAAACGTCTAATTTTCCGACTGGGACATACTATAAACTATATCAAAATTCTTACAAATGTCCTCAAAGGCGAAGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAGATTAGTCTTCTCAAAGGTGGTTCCGGGTGAAGTTCTTCAAGATGGTATTAAGAACCCAACGCCTCGTACAGTTAATGTGCTTAGTTATCTATTAGAAGCCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACAATCAGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAGGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGTATTTTATTATGACTACCTTGATTTTCCACATCTCTACCCTCTTGTGTCCGGAATTCGAGTATGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGGTGTAGCTGATGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCACACACAAAGGAGGAGGTATTATGTCTTTTGGACTTGCTCGATTGGAAATGAATGAAGTATTCATCATTTTCTCTAGAAAGTTAGAGTAAGACTCACTCGTGAATGTTGCTCACATGTATTTGGTATCACCGAATATCTGTACTTATGTATTATTTTTTCAGTTCAGTAAATAG

mRNA sequence

ATGTCATGGGAAATTTTGAATCTAGTTTTTCCTTTGTTGGACGATGTGGACCTTGCTTCATGCATGGCAGTATCCAGACAGTGGAGAGACGCAGCTCGAGATGATTACTTTTGGAAATGTTTGTGCGCTAAGAGGTGGCCTTCAACCTACAAAACGTCTAATTTTCCGACTGGGACATACTATAAACTATATCAAAATTCTTACAAATGTCCTCAAAGGCGAAGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAGATTAGTCTTCTCAAAGGTGGTTCCGGGTGAAGTTCTTCAAGATGGTATTAAGAACCCAACGCCTCGTACAGTTAATGTGCTTAGTTATCTATTAGAAGCCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACAATCAGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAGGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGTATTTTATTATGACTACCTTGATTTTCCACATCTCTACCCTCTTGTGTCCGGAATTCGAGTATGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGGTGTAGCTGATGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCACACACAAAGGAGGAGTTCAGTAAATAG

Coding sequence (CDS)

ATGTCATGGGAAATTTTGAATCTAGTTTTTCCTTTGTTGGACGATGTGGACCTTGCTTCATGCATGGCAGTATCCAGACAGTGGAGAGACGCAGCTCGAGATGATTACTTTTGGAAATGTTTGTGCGCTAAGAGGTGGCCTTCAACCTACAAAACGTCTAATTTTCCGACTGGGACATACTATAAACTATATCAAAATTCTTACAAATGTCCTCAAAGGCGAAGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAGATTAGTCTTCTCAAAGGTGGTTCCGGGTGAAGTTCTTCAAGATGGTATTAAGAACCCAACGCCTCGTACAGTTAATGTGCTTAGTTATCTATTAGAAGCCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACAATCAGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAGGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGTATTTTATTATGACTACCTTGATTTTCCACATCTCTACCCTCTTGTGTCCGGAATTCGAGTATGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGGTGTAGCTGATGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCACACACAAAGGAGGAGTTCAGTAAATAG

Protein sequence

MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTYYKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRTVNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEEFSK

Homology

[Close]

BLAST of CmaCh12G007070 vs. ExPASy Swiss-Prot
Match: Q9FL82 (F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.5e-66
Identity = 127/239 (53.14%), Postives = 164/239 (68.62%), Query Frame = 0


Query: 2   SWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTYY 61
           S E+L  VFPLL+  DLASCM V +QWRD ARDD++WKC CAK+WPS  K    PT TYY
Sbjct: 3   SEEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYY 62

Query: 62  KLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRTV 121
           K+YQ   K    R+L  PRLSF++LEFFIDIWSE RLVFS ++PG  L++GI+       
Sbjct: 63  KMYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGIS 122

Query: 122 NVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQTS 181
           NVL   L  P +KM +  EP F+IP+  ++SVSV+V   DS KVA+I+N+S+FDY+D++S
Sbjct: 123 NVLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSS 182

Query: 182 CRVFYYDYLDFPHLYPLVSGIRVCISFLFL---GNGNGGVADVSGIVMDFSDVAHTKEE 238
            R   ++YLD    YP +SGIR  IS LF+      + G+ DV GI +DF+DVA TKEE
Sbjct: 183 YRALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEE 241

[Close]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL
Match: A0A6J1KS59 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111496001 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.2e-135
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY
Sbjct: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT
Sbjct: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE
Sbjct: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL
Match: A0A6J1GHM7 (F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111454022 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 213/237 (89.87%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           M+WEILNLVFPLL+DVDLASCMAVSR+WRD ARDDYFWKCLC KRWPSTYK SNFPTGTY
Sbjct: 1   MAWEILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLY+NSY+CP  R LLSPRLSFDDLEFFIDIWSEG LVFSKVVPG+VLQDG+KNPTPRT
Sbjct: 61  YKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           +NVLSYLLE PGFKMTLAVEPGFSIPMCDTI VSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 INVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCR FY+DYL+FPHLYPL SGIRVCISFLFLGNGNG VA+VSGIVMDFSDVA+TKEE
Sbjct: 181 SCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL
Match: A0A6J1EVM4 (F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.3e-91
Identity = 169/235 (71.91%), Postives = 193/235 (82.13%), Query Frame = 0


Query: 4   EILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTYYKL 63
           E+LNL+FPLL+DVDLASCMAV +QWRD ARDDY WKCLC K+WPS  K  N   GTYYKL
Sbjct: 5   EVLNLIFPLLEDVDLASCMAVCKQWRDIARDDYLWKCLCTKKWPSICKRPNI-YGTYYKL 64

Query: 64  YQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRTVNV 123
           Y+N Y+CP+ R LL+PRLSFDDLEFFIDIW E  L+FS+VV GEVLQDG+KNPTPRT NV
Sbjct: 65  YRNLYECPKSRCLLTPRLSFDDLEFFIDIWCENTLLFSRVVSGEVLQDGLKNPTPRTHNV 124

Query: 124 LSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           LSYL E PGFKMTLAVEPGFSI + DT+SVSV+V  K+S+KV Q+VNKS+FDY D+ S R
Sbjct: 125 LSYLQEGPGFKMTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGR 184

Query: 184 VFYYDYLDFPHLYPLVSGIRVCISFLFLGNG-NGGVADVSGIVMDFSDVAHTKEE 238
            F +DYLDF HLYPLVSGIR  +S LFL N  N GV DV+GIVMDF DVA TK+E
Sbjct: 185 AFCFDYLDFSHLYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE 238

[Close]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL
Match: A0A6J1ITK0 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 167/234 (71.37%), Postives = 193/234 (82.48%), Query Frame = 0


Query: 4   EILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTYYKL 63
           E+LNL+FPLL+DVDLASCMAV +QWRD AR+DY WKCLCAK+WPS  K  N  + TYYKL
Sbjct: 5   EVLNLIFPLLEDVDLASCMAVCKQWRDVARNDYLWKCLCAKKWPSMCKRPNI-SRTYYKL 64

Query: 64  YQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRTVNV 123
           Y+N Y+ P+ R LL+PRLSFDDLEFFIDIWS+  L+FS++V GEVLQDG+KNPT RT NV
Sbjct: 65  YRNLYERPKSRCLLTPRLSFDDLEFFIDIWSKNTLLFSRMVLGEVLQDGLKNPTSRTNNV 124

Query: 124 LSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           LSYL E PGFKMTLAVEPGFSI + DT+SVSV+V  K+S+KVA IVNKSIFDY D+ SCR
Sbjct: 125 LSYLQEGPGFKMTLAVEPGFSISISDTMSVSVLVRCKNSNKVAHIVNKSIFDYFDKMSCR 184

Query: 184 VFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
            F +DYLDF HLYP VSGIR  +S LFL N N GV DV+GIVMDF DVA TK+E
Sbjct: 185 AFCFDYLDFSHLYPFVSGIRAWVSLLFLDNENDGVVDVNGIVMDFCDVAKTKDE 237

[Close]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL
Match: A0A1S3BL55 (F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.1e-88
Identity = 161/238 (67.65%), Postives = 191/238 (80.25%), Query Frame = 0


Query: 1   MSW-EILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGT 60
           M+W E+L ++FPLL+ VDLASCMAV +QWRD ARDDYFWKCLCAK+WPST KTS+ PT T
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPR 120
           YYKLY+N YK P  R LL PRLSFDDLEFFIDIWSE RL+FS+ V G +LQ+G+K+P P 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 121 TVNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQ 180
           T NVLSY LE P FKMTL VEP FSIP+ + +S SV+VG KDS+KVA+IVNKS+FDY+D+
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           TS R   +DYLDF  L+P VSGIR  IS LF+ +GN G  DV GIVMDF D A+TK+E
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGAIDVFGIVMDFCDAANTKDE 238

[Close]

BLAST of CmaCh12G007070 vs. NCBI nr
Match: XP_023001983.1 (F-box protein At5g39250-like [Cucurbita maxima])

HSP 1 Score: 492.3 bits (1266), Expect = 2.4e-135
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY
Sbjct: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT
Sbjct: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE
Sbjct: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. NCBI nr
Match: XP_022951059.1 (F-box protein At5g39250-like [Cucurbita moschata])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 213/237 (89.87%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           M+WEILNLVFPLL+DVDLASCMAVSR+WRD ARDDYFWKCLC KRWPSTYK SNFPTGTY
Sbjct: 1   MAWEILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLY+NSY+CP  R LLSPRLSFDDLEFFIDIWSEG LVFSKVVPG+VLQDG+KNPTPRT
Sbjct: 61  YKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           +NVLSYLLE PGFKMTLAVEPGFSIPMCDTI VSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 INVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCR FY+DYL+FPHLYPL SGIRVCISFLFLGNGNG VA+VSGIVMDFSDVA+TKEE
Sbjct: 181 SCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. NCBI nr
Match: KAG6585809.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 212/237 (89.45%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           M+WEILNLVFPLL+DVDLASCMAVSR+WRD ARDDYFWKCLC KRWPSTYK SNFPTGTY
Sbjct: 1   MAWEILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLY+NSY+CP  R LLSPRLSFDDLEFFIDIWSEG LVFSKVVPG+VLQDG+KNPTPRT
Sbjct: 61  YKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           +NVLSYLLE PGFKMTLAVEPGFSIPMCDTI VSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 INVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCR FY+DYL+FPHLYPL SGIRVCISFLFLGNGNG VA+VSGIVMDF+DVA+TKEE
Sbjct: 181 SCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFNDVANTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. NCBI nr
Match: KAG7020741.1 (F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-122
Identity = 212/237 (89.45%), Postives = 224/237 (94.51%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           M+WEILNLVFPLL+DVDLASCMAVSR+WRD ARDDYFWKCLC KRWPSTYK SNFP GTY
Sbjct: 1   MAWEILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPIGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLY+NSY+CP  R LLSPRLSFDDLEFFIDIWSEG LVFSKVVPG+VLQDG+KNPTPRT
Sbjct: 61  YKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           +NVLSYLLE PGFKMTLAVEPGFSIPMCDTI VSVIVGYKDSSKVAQIVNKSIFDYVDQT
Sbjct: 121 INVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SCR FY+DYL+FPHLYPL SGIRVCISFLFLGNGNG VA+VSGIVMDFSDVA+TKEE
Sbjct: 181 SCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. NCBI nr
Match: XP_023536935.1 (F-box protein At5g39250-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.1 bits (1128), Expect = 2.4e-119
Identity = 208/237 (87.76%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MSWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTY 60
           MSWEILNLVFPLL+DVDL SCMAVSR+WRDAARDDYFWKCLC KRWPSTYK SNFPTGTY
Sbjct: 1   MSWEILNLVFPLLEDVDLGSCMAVSREWRDAARDDYFWKCLCIKRWPSTYKMSNFPTGTY 60

Query: 61  YKLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRT 120
           YKLY+NSY+C   R LLSPRLSFDDLEFFIDIWSEG+LVFSKVVPG+VLQDG+KNPTPRT
Sbjct: 61  YKLYRNSYQCSNSRRLLSPRLSFDDLEFFIDIWSEGKLVFSKVVPGKVLQDGVKNPTPRT 120

Query: 121 VNVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQT 180
           VNVLSYLLE PGFKMTLAVEPGFSIPMCDTI VSV+VGYKDSSKVAQIVNKSIFDYV+QT
Sbjct: 121 VNVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVMVGYKDSSKVAQIVNKSIFDYVNQT 180

Query: 181 SCRVFYYDYLDFPHLYPLVSGIRVCISFLFLGNGNGGVADVSGIVMDFSDVAHTKEE 238
           SC  FY+DYL+ PHLYPL SGIRVCISFLFL NGNGGVA++S IVMDFSDVA+TKEE
Sbjct: 181 SCSAFYFDYLNSPHLYPLASGIRVCISFLFLDNGNGGVAELSRIVMDFSDVANTKEE 237

[Close]

BLAST of CmaCh12G007070 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 252.3 bits (643), Expect = 3.9e-67
Identity = 127/239 (53.14%), Postives = 164/239 (68.62%), Query Frame = 0


Query: 2   SWEILNLVFPLLDDVDLASCMAVSRQWRDAARDDYFWKCLCAKRWPSTYKTSNFPTGTYY 61
           S E+L  VFPLL+  DLASCM V +QWRD ARDD++WKC CAK+WPS  K    PT TYY
Sbjct: 3   SEEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYY 62

Query: 62  KLYQNSYKCPQRRSLLSPRLSFDDLEFFIDIWSEGRLVFSKVVPGEVLQDGIKNPTPRTV 121
           K+YQ   K    R+L  PRLSF++LEFFIDIWSE RLVFS ++PG  L++GI+       
Sbjct: 63  KMYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGIS 122

Query: 122 NVLSYLLEAPGFKMTLAVEPGFSIPMCDTISVSVIVGYKDSSKVAQIVNKSIFDYVDQTS 181
           NVL   L  P +KM +  EP F+IP+  ++SVSV+V   DS KVA+I+N+S+FDY+D++S
Sbjct: 123 NVLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSS 182

Query: 182 CRVFYYDYLDFPHLYPLVSGIRVCISFLFL---GNGNGGVADVSGIVMDFSDVAHTKEE 238
            R   ++YLD    YP +SGIR  IS LF+      + G+ DV GI +DF+DVA TKEE
Sbjct: 183 YRALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEE 241

The following BLAST results are available for this feature:

BLAST of CmaCh12G007070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL82	5.5e-66	53.14	F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1	[more]

BLAST of CmaCh12G007070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KS59	1.2e-135	100.00	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111496001 PE=4 SV...	[more]
A0A6J1GHM7	1.0e-123	89.87	F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111454022 PE=4 ...	[more]
A0A6J1EVM4	2.3e-91	71.91	F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 ...	[more]
A0A6J1ITK0	2.6e-90	71.37	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV...	[more]
A0A1S3BL55	4.1e-88	67.65	F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1	[more]

BLAST of CmaCh12G007070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001983.1	2.4e-135	100.00	F-box protein At5g39250-like [Cucurbita maxima]	[more]
XP_022951059.1	2.1e-123	89.87	F-box protein At5g39250-like [Cucurbita moschata]	[more]
KAG6585809.1	4.7e-123	89.45	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7020741.1	1.1e-122	89.45	F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023536935.1	2.4e-119	87.76	F-box protein At5g39250-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh12G007070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39250.1	3.9e-67	53.14	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 1..41 e-value: 5.2E-6 score: 36.0
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 4..42 e-value: 4.2E-9 score: 36.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..41 score: 8.941087
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..72 e-value: 7.0E-10 score: 40.7
IPR044207	F-box protein At5g39250-like	PANTHER	PTHR47722	EXPRESSED PROTEIN	coord: 4..237
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G007070.1	CmaCh12G007070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding