CmaCh12G006470 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G006470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 3426637 .. 3427238 (-)
RNA-Seq ExpressionCmaCh12G006470
SyntenyCmaCh12G006470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGGACTGGAAGCCACGTGGAGAATTCTTATTGGTGAATCGACCGAAAGGTTGATTGTACCTGATTCTCCAACGCATCACGTTTCCGAAATGGAAGATGAAAGACAAGAGAAAAAATCACAATTTTAAAATCCCATTAGAAGCGCCTTGAAAGAACAAACCAATCCAGATTTCAGAGGAGCGGAGAGGAGAGGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCATCGCGGTTGTCGAGAACGGTTTCGTTTTATGTCTTTTTCACTAAGCTTTCGACAACAAACTGCGATTTCTACTGCCTCTCTCCCGTCTCCACTCCGTTAAATCACGAGTACGTTTTTTTCTTTTCTTTATCTTTTGTTTGATTCTCTATTTTCGATGAATTTCCTTGTTTAGATAGGTTCTTTGGGGATTAGGTATTTTGTAGTTTTCGATTTCGAACTCTCTCTTGGAATTGGGGTTTTGATTTCATCGAAATCTGAATTGGAGGTTGAAGCGGATACTTGTTTTGATGGGATTTGTTGTGTTTGA

mRNA sequence

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGGACTGGAAGCCACGTGGAGAATTCTTATTGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCATCGCGGTTGTCGAGAACGGTTTCGTTTTATGTCTTTTTCACTAAGCTTTCGACAACAAACTGCGATTTCTACTGCCTCTCTCCCGTCTCCACTCCGTTAAATCACGAGTATTTTGTAGTTTTCGATTTCGAACTCTCTCTTGGAATTGGGGTTTTGATTTCATCGAAATCTGAATTGGAGGTTGAAGCGGATACTTGTTTTGATGGGATTTGTTGTGTTTGA

Coding sequence (CDS)

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGGACTGGAAGCCACGTGGAGAATTCTTATTGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCATCGCGGTTGTCGAGAACGGTTTCGTTTTATGTCTTTTTCACTAAGCTTTCGACAACAAACTGCGATTTCTACTGCCTCTCTCCCGTCTCCACTCCGTTAAATCACGAGTATTTTGTAGTTTTCGATTTCGAACTCTCTCTTGGAATTGGGGTTTTGATTTCATCGAAATCTGAATTGGAGGTTGAAGCGGATACTTGTTTTGATGGGATTTGTTGTGTTTGA

Protein sequence

MNHNQLRLIRSTVDWKPRGEFLLTGDPAVPRGKIPFPSRLSRTVSFYVFFTKLSTTNCDFYCLSPVSTPLNHEYFVVFDFELSLGIGVLISSKSELEVEADTCFDGICCV
Homology
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BLAST of CmaCh12G006470 vs. NCBI nr
Match: KAG6585750.1 (hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020661.1 hypothetical protein SDJN02_17347, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16
Identity = 56/110 (50.91%), Postives = 63/110 (57.27%), Query Frame = 0 

Query: 1   MNHNQLRLIRSTVDWKPRGEFLL--------------------TGDPAVPRGKI------ 60
           MNHNQLRLIRSTV+WKPRGEFLL                     G P   R  I      
Sbjct: 1   MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREE 60

Query: 61  PFPSRLSRTVSF-YVFFTKLSTTNCDFYCLSPVSTPLNHEYFVVFDFELS 84
            FP R      F +VFFTKLSTTNCD+YCLSPVSTPLNHE  ++   ++S
Sbjct: 61  RFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVS 110

The following BLAST results are available for this feature:
BLAST of CmaCh12G006470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G006470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G006470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585750.13.9e-1650.91hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh12G006470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006470.1CmaCh12G006470.1mRNA