CmaCh12G006110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G006110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal_S7 domain-containing protein
Location	Cma_Chr12: 3205816 .. 3206199 (-)
RNA-Seq Expression	CmaCh12G006110
Synteny	CmaCh12G006110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTAGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTCACTCAGACGTAGCTCGCTTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

mRNA sequence

ATGAGCTTAGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTCACTCAGACGTAGCTCGCTTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Coding sequence (CDS)

ATGAGCTTAGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTCACTCAGACGTAGCTCGCTTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Protein sequence

MSLVLLHRRETKEDFHLQVSLRRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

Homology

[Close]

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL
Match: A0A5N6P537 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-50
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 20  SLRRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK 79
           S  RSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK
Sbjct: 76  SFSRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK 135

Query: 80  VTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           VTTSGMASSHSVTGGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 136 VTTSGMASSHSVTGGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL
Match: A0A6D2HHK8 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.9e-46
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 28  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 87
           FGCEAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGCEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 88  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL
Match: A0A078E1E5 (BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 28  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 87
           FG EAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 88  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL
Match: A0A3P6GJR6 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC47T61068H PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 28  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 87
           FG EAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 88  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL
Match: A4QMB2 (ORF137 OS=Pinus koraiensis OX=88728 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 3   LVLLHRRETKEDFHLQVSLRRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYD 62
           +V LH R+ KE F    SL +  +L   +AVSN+  Q+ALALPEKEVIQPHLPVRLPCYD
Sbjct: 15  MVSLHCRDPKEYFLPSTSLAQMCIL--PDAVSNEEAQKALALPEKEVIQPHLPVRLPCYD 74

Query: 63  FTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA 122
           FTPVTSPAFGIPLLAVKVTT GMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA
Sbjct: 75  FTPVTSPAFGIPLLAVKVTTWGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA 134

Query: 123 AYNPN 128
           A NPN
Sbjct: 135 ACNPN 137

[Close]

BLAST of CmaCh12G006110 vs. NCBI nr
Match: KAD5960821.1 (hypothetical protein E3N88_12293 [Mikania micrantha])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 20  SLRRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK 79
           S  RSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK
Sbjct: 76  SFSRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVK 135

Query: 80  VTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           VTTSGMASSHSVTGGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 136 VTTSGMASSHSVTGGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of CmaCh12G006110 vs. NCBI nr
Match: KAG2241182.1 (hypothetical protein Bca52824_096832 [Brassica carinata] >KAG2275617.1 hypothetical protein Bca52824_058172 [Brassica carinata] >KAG2275694.1 hypothetical protein Bca52824_058249 [Brassica carinata] >CAA7013178.1 unnamed protein product [Microthlaspi erraticum] >CAA7057850.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 28  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 87
           FGCEAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGCEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 88  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of CmaCh12G006110 vs. NCBI nr
Match: CAF1728903.1 (unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Brassica oleracea] >CAF1751061.1 unnamed protein product [Brassica napus] >CAF1831100.1 unnamed protein product [Brassica napus] >CDY19670.1 BnaC09g29260D [Brassica napus])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 28  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 87
           FG EAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 88  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of CmaCh12G006110 vs. NCBI nr
Match: YP_001152206.1 (ORF137 [Pinus koraiensis] >ABP35449.1 ORF137 [Pinus koraiensis])

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-44
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 3   LVLLHRRETKEDFHLQVSLRRSSLLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYD 62
           +V LH R+ KE F    SL +  +L   +AVSN+  Q+ALALPEKEVIQPHLPVRLPCYD
Sbjct: 15  MVSLHCRDPKEYFLPSTSLAQMCIL--PDAVSNEEAQKALALPEKEVIQPHLPVRLPCYD 74

Query: 63  FTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA 122
           FTPVTSPAFGIPLLAVKVTT GMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA
Sbjct: 75  FTPVTSPAFGIPLLAVKVTTWGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVA 134

Query: 123 AYNPN 128
           A NPN
Sbjct: 135 ACNPN 137

[Close]

BLAST of CmaCh12G006110 vs. NCBI nr
Match: KAG4154841.1 (hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum])

HSP 1 Score: 187.2 bits (474), Expect = 8.8e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 611 VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 670

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 671 GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 705

The following BLAST results are available for this feature:

BLAST of CmaCh12G006110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G006110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6P537	5.2e-50	96.30	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1	[more]
A0A6D2HHK8	5.9e-46	96.00	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE...	[more]
A0A078E1E5	1.1e-44	95.00	BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1	[more]
A0A3P6GJR6	1.1e-44	95.00	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC47T61068H PE=4 SV=1	[more]
A4QMB2	2.5e-44	80.00	ORF137 OS=Pinus koraiensis OX=88728 PE=4 SV=1	[more]

BLAST of CmaCh12G006110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD5960821.1	1.1e-49	96.30	hypothetical protein E3N88_12293 [Mikania micrantha]	[more]
KAG2241182.1	1.2e-45	96.00	hypothetical protein Bca52824_096832 [Brassica carinata] >KAG2275617.1 hypotheti...	[more]
CAF1728903.1	2.3e-44	95.00	unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Br...	[more]
YP_001152206.1	5.2e-44	80.00	ORF137 [Pinus koraiensis] >ABP35449.1 ORF137 [Pinus koraiensis]	[more]
KAG4154841.1	8.8e-44	98.95	hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum]	[more]

BLAST of CmaCh12G006110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 28..127
None	No IPR available	PANTHER	PTHR38146:SF11	BNAC09G29260D PROTEIN	coord: 28..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G006110.1	CmaCh12G006110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast