CmaCh12G006000 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G006000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Small VCP/p97-interacting protein
Location	Cma_Chr12: 3138437 .. 3140683 (-)
RNA-Seq Expression	CmaCh12G006000
Synteny	CmaCh12G006000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTGATAGTGAAAATACCCATTCGAGATTTCGAGGGAAAACCTGCAACTGCAAGCAAAGCGATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGTAGCTTCCTCCTCCCTCACTTTTAACTTTCATTCGGAACTTCTGTACATCTTGATCGATCCTTTACAATTAGAGCAGTTTATCATTTGATTAGGGCTATCGTTGATCGTTATGTTTTTTGATCAGCACTTCGGTCTTGTTAGTCAATGTTAATTGTTCAGGTCTGGGATGTGACTGTTCTGTAGGGGAATGAATTTTGGGGTTTTTGTCACAAAGGGCTACCGTTGATCGTTATGTTTTTTGTCACGAAGACTGCTTAATTTTTTATTTTTTTTTAAGCAATCGAATGAAGCTTAGTCTTCAGGTTTATTAAAGAAAAGCGAGGAAGAAAGCAAGAAAAAGGAGCCATGAGTGCTCTAATTTGGGATGAATGAATTGCCCCCACCAATTTTTTCCTAAAAAGTACACTTGGGCATACATTAATTACTTGTTCATACCAAGGATGTATCTGCTATAGTTAACATTGAACTATTGAAGTACTTCCAGCTTCTCCTTTTGATGATGAATTGAGCATTCAGTCTTAAATGAGAAGCTATGATTGAATCATCAATGTTTTTTTTGTACTGAAATGATATAAATATTTGCAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGGTCATTCATATTCCAGTTGTGTTTGTTGTTTGTTAATTGATATTATACAGTCAGTTATATTTAGATTCTTTATTGTGGTCGGTAATATAGCTTAAAAGAACCCCATAATATTTTCGCTCATAGAATTTGTTTCACTTTAGATGCAGTTTATCAGAGCATGTTGATGATAGCCTTGTTTGCTAACAGATGATAATATAGCAAGTGATTCAAAACTTTTCTACTTGTTTTTGTTTATGCAGTGGAGTATGGGCTGAGGCAGTAATCTATGGGCCAGCTTCATTTCTTCTTTTTTTCTGTAAGTGAAATTTCTAGCAGCTAAAGTTCAATAAGCTCTTCTGCGCATTACGTTTATGGTTATCAGATTAGTCTTGTACCACTATGCCACACCCACAATCCATGACAACAAAATAACTTGATTGTGCAAATGGAATATATCGTAGTTGGGCTCGTCCTAGGTTATGTAGGTTAGTCTGGCGAAGGATTTTACAAACTATGGCAGGTGAGATCTCACATCGGTTGGAGAGGGAAACAAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAACCGTGAGATTGATAGCGATACGTAACAGGCCAAAGCGGACAATATTTGCTAGCGTTGGGTTTGGGCTGTTACAAATGATATCAGAGCCAGACACCGAGGGGTGTGCCAGCGAGGACGCTGGCCCTCAAAGGGGGTAAATTGTGAGATCTCACGTCAGTTAGAGAGAGGAATGAAGCATTACTTATAAGGGTGTGGAAACTTCTCCCTAGCAGATGCGTTTTAAAATCGTGAGGTTGACAACGATACGTAACGGGCTAAAGTGGACAATATTTGCTAGCGATGGGTTTGGGCTGTTACATGAACGGTTGTCCTATATTTTCTTTATCTCTCATACATCGTGTCCAAGTAATCAAGCTCTTCTTCATGTATTATATGATGTCTATTTTCCCTTGTATTTACAATGTGATGAATCTCGTTTGGTGTTCCCTGTTGAAGTGCAAGCCTCAATTGTGCAGTGTTAATAACTGGAAAAGATTGTATATATATCCGCCTTCCTGGGATCCTCTTATACCCCAAGCAACTTGTCTTTATACTCCTAGTCCCCCAAGACAGAAGTTATTGGATGAAACTGCGGTCTTGTATTTGTTTATTCATGAATCAAGGAACGCAATAAGTGTGTGAACTTAGATTCTTTGACACTTTACTCTCATGTAAATTTTACTTAACTTCTTATGTCTCTATATGCAATTACTGTAAAGAAACTCATGTTTTGCTCTCTTGGCAAGAATTTGACTCTGATGATATCATTAACGTATAAGAAAATTGGTAAAAAAGCAATTATAGAACAGTTTCT

mRNA sequence

AAAATTGATAGTGAAAATACCCATTCGAGATTTCGAGGGAAAACCTGCAACTGCAAGCAAAGCGATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGAGGCAGTAATCTATGGGCCAGCTTCATTTCTTCTTTTTTTCTTGCAAGCCTCAATTGTGCAGTGTTAATAACTGGAAAAGATTGTATATATATCCGCCTTCCTGGGATCCTCTTATACCCCAAGCAACTTGTCTTTATACTCCTAGTCCCCCAAGACAGAAGTTATTGGATGAAACTGCGGTCTTGTATTTGTTTATTCATGAATCAAGGAACGCAATAAGTGTGTGAACTTAGATTCTTTGACACTTTACTCTCATGTAAATTTTACTTAACTTCTTATGTCTCTATATGCAATTACTGTAAAGAAACTCATGTTTTGCTCTCTTGGCAAGAATTTGACTCTGATGATATCATTAACGTATAAGAAAATTGGTAAAAAAGCAATTATAGAACAGTTTCT

Coding sequence (CDS)

ATGGGGCAATGCGTGAGTTGTCTGGACGAAGACCAAAAGCAACAGAGAAAAGAGGAAGAAAGATTGGCCTCCGTTGAAGCTCGGTCCAAAGCTGCCGAAGCAGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGAGCTGCACGTGCTCAGATGGCAGCAAATGCAAAGCAATCTGCTAACGCTAACAAGGGAGAACCAGTTCTTAAGTGGAGTATGGGCTGA

Protein sequence

MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAKQSANANKGEPVLKWSMG

Homology

[Close]

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQC SCLDE Q+Q+RKEEERLASVEAR+KAAEAAQ+RQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL
Match: A0A6J1BPP8 (uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004688 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQC+ CLDE QKQQR+EEERL+SVEAR+KAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCLGCLDEGQKQQRQEEERLSSVEARAKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSAN N+GEPVLKWSMG
Sbjct: 61 QSANTNRGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSANANKGEPVLKWSMG 78
          QSANANKGEPVLKWSMG
Sbjct: 80 QSANANKGEPVLKWSMG 96

[Close]

BLAST of CmaCh12G006000 vs. NCBI nr
Match: XP_022951067.1 (uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_023002620.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023002621.1 uncharacterized protein LOC111496424 [Cucurbita maxima] >XP_023537497.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537499.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >XP_023537500.1 uncharacterized protein LOC111798519 [Cucurbita pepo subsp. pepo] >KAG6585707.1 hypothetical protein SDJN03_18440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSANANKGEPVLKWSMG
Sbjct: 61 QSANANKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-27
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSAN NKGEPVLKWSMG
Sbjct: 61 QSANTNKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. NCBI nr
Match: XP_011649565.1 (uncharacterized protein LOC101210682 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60
          MGQCVSCLD  QKQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANANKGEPVLKWSMG 78
          QSA ANKGEPVLKWSMG
Sbjct: 61 QSATANKGEPVLKWSMG 77

[Close]

BLAST of CmaCh12G006000 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-21
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 4  CVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAKQSA 63
          C SC D  QK+QRKEEER AS EAR+KAAEAAQRR+E+F+KSAAGRAA+AQ+   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NANKGEPVLKWSM 77
          N NKGEPVLKW M
Sbjct: 63 NTNKGEPVLKWQM 75

The following BLAST results are available for this feature:

BLAST of CmaCh12G006000 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G006000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLT2	3.1e-29	100.00	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]
A0A6J1GGM5	3.1e-29	100.00	uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A1S3BAJ0	2.9e-27	94.81	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1K846	1.2e-25	89.61	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]
A0A6J1BPP8	1.2e-25	89.61	uncharacterized protein LOC111004688 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of CmaCh12G006000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020610.1	6.3e-29	100.00	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951067.1	6.3e-29	100.00	uncharacterized protein LOC111454028 [Cucurbita moschata] >XP_022951068.1 unchar...	[more]
XP_008444542.1	5.9e-27	94.81	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
XP_038886006.1	1.3e-26	93.51	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_011649565.1	6.6e-26	93.51	uncharacterized protein LOC101210682 [Cucumis sativus]	[more]

BLAST of CmaCh12G006000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	6.8e-21	75.34	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..47
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 1..77
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 1..73 e-value: 5.6E-12 score: 45.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G006000.1	CmaCh12G006000.1	mRNA