CmaCh12G005880 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G005880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 3069264 .. 3069937 (+)
RNA-Seq ExpressionCmaCh12G005880
SyntenyCmaCh12G005880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGCAGAGATTCTTCTGTGTCTATGTCCAGGTGAAAGCAATGGGGCTACCCACTATGTGTTTCCCATCTGACCATTCCAGACGAGCAAAGCTCTCAGTCCCCGACGGCATTGGAGAAGCAATGAAAGTCACTGTATAACTCTTTTGCTCATTTGCCTCTGCAAAACTCAGAGTTTGTGGCTCAACGACAATCTTCACCGACGGACTTTTCGACGTCACAGTGGCCTTATATGTTGATGGGGTGCCTTTGTTGGTCAGTGTTCTTGTGTATTTTATGGTGGTCGGTGCAGCGTTTTCGTCTCCTCTGATTGAAGGGGTCTCCAATGGAACTGCAAAAGATGGGTAGTTCAGATCCTCCAATCTGTACTTGTTCCCACTGCAGGTGAAGTCCTTCTTGGTGATTACTTTGATTTCAAGTGAGGTGTAGTTTAGGGCGCAAAGGAAGGCGAAGTAGTCATTGGTGGTGGTGTCGTAAACAAGGCCGGGATCGAGGGCAGCCATTGGATTCACGTGTCCGGCTCCTATACCGAACGGCGTCGCCGGTAATCCCTTGGATACGTCTTGAATTGCTTCGCCATTTTTGTATGTTGAGTATGCTGTGGTCATTAAGGCAGATCTAATGGCGGCTGGGCTCCAATCTGGATGAGCAGCTTTCAGAAGTGCAGCTAA

mRNA sequence

ATGGATTTGCAGAGATTCTTCTGTGTCTATGTCCAGGTGAAAGCAATGGGGCTACCCACTATGTGTTTCCCATCTGACCATTCCAGACGAGCAAAGCTCTCAGTCCCCGACGGCATTGGAGAAGCAATGAAAGTCACTGGCGCAAAGGAAGGCGAAGTAGTCATTGGTGGTGGTGTCGTAAACAAGGCCGGGATCGAGGGCAGCCATTGGATTCACGTGTCCGGCTCCTATACCGAACGGCGTCGCCGATCTAATGGCGGCTGGGCTCCAATCTGGATGAGCAGCTTTCAGAAGTGCAGCTAA

Coding sequence (CDS)

ATGGATTTGCAGAGATTCTTCTGTGTCTATGTCCAGGTGAAAGCAATGGGGCTACCCACTATGTGTTTCCCATCTGACCATTCCAGACGAGCAAAGCTCTCAGTCCCCGACGGCATTGGAGAAGCAATGAAAGTCACTGGCGCAAAGGAAGGCGAAGTAGTCATTGGTGGTGGTGTCGTAAACAAGGCCGGGATCGAGGGCAGCCATTGGATTCACGTGTCCGGCTCCTATACCGAACGGCGTCGCCGATCTAATGGCGGCTGGGCTCCAATCTGGATGAGCAGCTTTCAGAAGTGCAGCTAA

Protein sequence

MDLQRFFCVYVQVKAMGLPTMCFPSDHSRRAKLSVPDGIGEAMKVTGAKEGEVVIGGGVVNKAGIEGSHWIHVSGSYTERRRRSNGGWAPIWMSSFQKCS
Homology
[Close]
BLAST of CmaCh12G005880 vs. ExPASy TrEMBL
Match: A0A445BUR1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038928 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 11 VQVKAMGLPTMCFPSDHSRRAKLSVPDGIGEAMKVT 47
          VQ+KAMGL T+CFPSDH R+AKL VPDGI +A+ VT
Sbjct: 40 VQLKAMGLVTLCFPSDHCRKAKLLVPDGIEDAVNVT 75

[Close]
BLAST of CmaCh12G005880 vs. NCBI nr
Match: RYR42443.1 (hypothetical protein Ahy_A08g038928 isoform D [Arachis hypogaea])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 11 VQVKAMGLPTMCFPSDHSRRAKLSVPDGIGEAMKVT 47
          VQ+KAMGL T+CFPSDH R+AKL VPDGI +A+ VT
Sbjct: 40 VQLKAMGLVTLCFPSDHCRKAKLLVPDGIEDAVNVT 75

The following BLAST results are available for this feature:
BLAST of CmaCh12G005880 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G005880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445BUR12.4e-0572.22Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038928 PE=4 SV=1[more]
BLAST of CmaCh12G005880 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR42443.14.9e-0572.22hypothetical protein Ahy_A08g038928 isoform D [Arachis hypogaea][more]
BLAST of CmaCh12G005880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G005880.1CmaCh12G005880.1mRNA