CmaCh12G005760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G005760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	MFP1 attachment factor 1-like
Location	Cma_Chr12: 3014790 .. 3015017 (-)
RNA-Seq Expression	CmaCh12G005760
Synteny	CmaCh12G005760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGCCTTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCGTGAAGCTACAAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTATTCATGTCCAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

mRNA sequence

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGCCTTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCGTGAAGCTACAAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTATTCATGTCCAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

Coding sequence (CDS)

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGCCTTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCGTGAAGCTACAAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTATTCATGTCCAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

Protein sequence

MRFFKLPFMAVPLLLLLLLSGDINGEANTNTVKLQSQATKDGNRQMKEQRRMRPFHVFMSSKRKVPNASDPLHNR

Homology

[Close]

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL
Match: A0A6J1GK27 (MFP1 attachment factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454626 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 13 LLLLLLLSGDINGEANTNTVKLQSQATKDGNRQMKEQRRMRPFHVFMS 61
          LLLLLLLSGDINGEANTNTVKL SQATKDGNRQMKEQRRMRPFHVFMS
Sbjct: 6  LLLLLLLSGDINGEANTNTVKLPSQATKDGNRQMKEQRRMRPFHVFMS 53

[Close]

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL
Match: A0A5N5NQQ2 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_002684 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-05
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1  MRFFKLPFMAVPLLLLLLLSGDINGEANTNTVK-LQSQATKDGNRQMKEQRRMRPFHVFM 60
          +R F L  + V +LL+L +SGD   E     V  LQ+Q       + ++QR  R F  F 
Sbjct: 16 LRVFMLQKLVVLILLVLFISGDQKEEKTVRIVHGLQNQQPPGSTEKQQQQRLRRSFDKFF 75

Query: 61 SSKRKVPNASDPLHNR 76
          SSKRKVPNA+DPLHNR
Sbjct: 76 SSKRKVPNAADPLHNR 91

[Close]

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL
Match: A0A1R3HJP1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 5  KLPFMAVPLLLLLLLSGDINGEANTNTVKLQSQATKDG-----NRQMKEQRRMRPFHVFM 64
          KL  + + LL LLL+SGD N E+    + + SQ  K+       +Q  +QR    F  F 
Sbjct: 14 KLMVIVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFF 73

Query: 65 SSKRKVPNASDPLHNR 76
          SSKR+VPNASDPLHNR
Sbjct: 74 SSKRRVPNASDPLHNR 89

[Close]

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL
Match: A0A3N7G2Y1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G121800 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 2  RFFKLPFMAVPLLLLLLLSGDINGEANTNTVKLQSQATKDGNRQMKEQRRMRPFHVFMSS 61
          R F L    V LLL+L +SGD   E   N   LQ+Q         K+QR    F  F SS
Sbjct: 17 RVFVLQKPMVILLLVLFVSGDRKEETTVNVHGLQNQQPPSSTE--KQQRLRHSFDTFFSS 76

Query: 62 KRKVPNASDPLHNR 76
          KRKVPNASDPLHNR
Sbjct: 77 KRKVPNASDPLHNR 88

[Close]

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL
Match: A0A6N2MKW2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS368695 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1  MRFFKLPFMAVPLLLLLLLSGDINGEANTNTVK-LQSQATKDGNRQMKEQRRMRPFHVFM 60
          +R F L  + V +LL+L +SGD   E     V  LQ+Q       + ++QR  R F  F 
Sbjct: 7  LRVFMLQKLVVLILLVLFVSGDQKEEKTVRIVHGLQNQQPPGSTEKQQQQRLRRSFDKFF 66

Query: 61 SSKRKVPNASDPLHNR 76
          SS RKVPNA+DPLHNR
Sbjct: 67 SSNRKVPNAADPLHNR 82

[Close]

BLAST of CmaCh12G005760 vs. NCBI nr
Match: KAG7020597.1 (MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MRFFKLPFMAVPLLLLLLLSGDINGEA--NTNTVKLQSQATKDGNRQMKEQRRMRPFHVF 60
          MRFFKLPFMAV LLLLLLLSGDINGEA  NTNTVKL SQATKDGNRQMKEQRRMRPFHVF
Sbjct: 1  MRFFKLPFMAVALLLLLLLSGDINGEANTNTNTVKLPSQATKDGNRQMKEQRRMRPFHVF 60

Query: 61 MSSKRK 65
          MSSKRK
Sbjct: 61 MSSKRK 66

[Close]

BLAST of CmaCh12G005760 vs. NCBI nr
Match: XP_022951889.1 (MFP1 attachment factor 1-like [Cucurbita moschata])

HSP 1 Score: 90.5 bits (223), Expect = 6.6e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 13 LLLLLLLSGDINGEANTNTVKLQSQATKDGNRQMKEQRRMRPFHVFMS 61
          LLLLLLLSGDINGEANTNTVKL SQATKDGNRQMKEQRRMRPFHVFMS
Sbjct: 6  LLLLLLLSGDINGEANTNTVKLPSQATKDGNRQMKEQRRMRPFHVFMS 53

[Close]

BLAST of CmaCh12G005760 vs. NCBI nr
Match: KAB5568891.1 (hypothetical protein DKX38_002684 [Salix brachista])

HSP 1 Score: 57.4 bits (137), Expect = 6.2e-05
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1  MRFFKLPFMAVPLLLLLLLSGDINGEANTNTVK-LQSQATKDGNRQMKEQRRMRPFHVFM 60
          +R F L  + V +LL+L +SGD   E     V  LQ+Q       + ++QR  R F  F 
Sbjct: 16 LRVFMLQKLVVLILLVLFISGDQKEEKTVRIVHGLQNQQPPGSTEKQQQQRLRRSFDKFF 75

Query: 61 SSKRKVPNASDPLHNR 76
          SSKRKVPNA+DPLHNR
Sbjct: 76 SSKRKVPNAADPLHNR 91

[Close]

BLAST of CmaCh12G005760 vs. NCBI nr
Match: OMO70596.1 (hypothetical protein COLO4_28570 [Corchorus olitorius])

HSP 1 Score: 57.0 bits (136), Expect = 8.1e-05
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 5  KLPFMAVPLLLLLLLSGDINGEANTNTVKLQSQATKDG-----NRQMKEQRRMRPFHVFM 64
          KL  + + LL LLL+SGD N E+    + + SQ  K+       +Q  +QR    F  F 
Sbjct: 14 KLMVIVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFF 73

Query: 65 SSKRKVPNASDPLHNR 76
          SSKR+VPNASDPLHNR
Sbjct: 74 SSKRRVPNASDPLHNR 89

[Close]

BLAST of CmaCh12G005760 vs. NCBI nr
Match: KAG6784477.1 (hypothetical protein POTOM_010173 [Populus tomentosa])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 2   RFFKLPFMAVPLLLLLLLSGDINGEANTNTVKLQSQATKDGNRQMKEQRRMRPFHVFMSS 61
           R F L    V LLL+L +SGD   E   N   LQ+Q         K+QR    F  F SS
Sbjct: 107 RVFVLQKPIVILLLVLFVSGDRKEETTVNVHGLQNQQPPSSTE--KQQRLRHSFDTFFSS 166

Query: 62  KRKVPNASDPLHNR 76
           KRKVPNASDPLHNR
Sbjct: 167 KRKVPNASDPLHNR 178

The following BLAST results are available for this feature:

BLAST of CmaCh12G005760 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G005760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK27	3.2e-15	97.92	MFP1 attachment factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454626 PE=4...	[more]
A0A5N5NQQ2	3.0e-05	46.05	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_002684 PE=4 SV=1	[more]
A0A1R3HJP1	3.9e-05	46.05	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1	[more]
A0A3N7G2Y1	5.1e-05	50.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G121800 PE=4 ...	[more]
A0A6N2MKW2	1.5e-04	44.74	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS368695 PE=4 SV=...	[more]

BLAST of CmaCh12G005760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020597.1	1.6e-21	93.94	MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951889.1	6.6e-15	97.92	MFP1 attachment factor 1-like [Cucurbita moschata]	[more]
KAB5568891.1	6.2e-05	46.05	hypothetical protein DKX38_002684 [Salix brachista]	[more]
OMO70596.1	8.1e-05	46.05	hypothetical protein COLO4_28570 [Corchorus olitorius]	[more]
KAG6784477.1	1.1e-04	50.00	hypothetical protein POTOM_010173 [Populus tomentosa]	[more]

BLAST of CmaCh12G005760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..75
None	No IPR available	PANTHER	PTHR34277:SF1	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20	coord: 8..75
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 8..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G005760.1	CmaCh12G005760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
biological_process	GO:0048527	lateral root development
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005634	nucleus