CmaCh12G005680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G005680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEarly dehydration inducible protein
LocationCma_Chr12: 2973353 .. 2974220 (-)
RNA-Seq ExpressionCmaCh12G005680
SyntenyCmaCh12G005680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAATTAACCAAATTATATCATTATAACATTTCATTCCATCCCTTTGAAACTCATGAACATCTCTTGAGAATTTCGATTCTAAAGTTCTTGGTAAAGCGTTTGAATTTTGTTGGAAGCTCCACAGCATGCACCAATCGCAGGTATTAATTAAGCCATTCCTACATCTTCGATCACTAATGATCATAACCCAACTTAGTTCCTCTAATTGTGTCTTGTCTGAAGGGTTCCGAGAAGATAAATGAAGAAGGAGCCATTGAGACGAAGGTTGAAACAGTAGATGAGCGGTCACCGCCGGGGCAGAGCGAGGAGCCCAGAAATGAAAAGACAACGGTTGTGCATTTAACTCGAAAGCAACGAGATGATAGCCAAGGGCGTGGGGTTTTGGGCAGTGCGGCCGCTGCTGTGGCGAATACTCTTCGTTCTGCTAAGGATGCGATTTTTGGTAAGGGGAAAGAGAGGAACGATGACTGATTCGAAGCAGTGAAGTATGGATTATGTAATGTAATATGAACTGTGAATGCTTTTGTTTTATATTTAATGTCTGGTTCCAACTGGGAAGCTGAAGTTTTGTATATAGTGTGTGAAATAATGGAACCAAAATTGATCACAACTCGGCGTAGTGTTCTAAGGTGAAAGGTTCACAGAAATGGTTCCATTTCTGATGTTAGATGAACACGATTCTCCACAATGGTATGATATTTTTCACTTTGAGCTTAGCTCTCATAACCACCTCGTACCTTTGCGGCTTCGTACCCATGGAGATAGTATTCCTTATTTATAAACTTATGATCATTCTATTCTCTAAACTAGTCGCTATTATCTCTTTTTACGCGTGTCTGGGTATAGGCTATTGTCTCTTTTTACGC

mRNA sequence

CTAAATTAACCAAATTATATCATTATAACATTTCATTCCATCCCTTTGAAACTCATGAACATCTCTTGAGAATTTCGATTCTAAAGTTCTTGGTAAAGCGTTTGAATTTTGTTGGAAGCTCCACAGCATGCACCAATCGCAGGGTTCCGAGAAGATAAATGAAGAAGGAGCCATTGAGACGAAGGTTGAAACAGTAGATGAGCGGTCACCGCCGGGGCAGAGCGAGGAGCCCAGAAATGAAAAGACAACGGTTGTGCATTTAACTCGAAAGCAACGAGATGATAGCCAAGGGCGTGGGGTTTTGGGCAGTGCGGCCGCTGCTGTGGCGAATACTCTTCGTTCTGCTAAGGATGCGATTTTTGGTAAGGGGAAAGAGAGGAACGATGACTGATTCGAAGCAGTGAAGTATGGATTATGTAATGTAATATGAACTGTGAATGCTTTTGTTTTATATTTAATGTCTGGTTCCAACTGGGAAGCTGAAGTTTTGTATATAGTGTGTGAAATAATGGAACCAAAATTGATCACAACTCGGCGTAGTGTTCTAAGGTGAAAGGTTCACAGAAATGGTTCCATTTCTGATGTTAGATGAACACGATTCTCCACAATGGTATGATATTTTTCACTTTGAGCTTAGCTCTCATAACCACCTCGTACCTTTGCGGCTTCGTACCCATGGAGATAGTATTCCTTATTTATAAACTTATGATCATTCTATTCTCTAAACTAGTCGCTATTATCTCTTTTTACGCGTGTCTGGGTATAGGCTATTGTCTCTTTTTACGC

Coding sequence (CDS)

ATGCACCAATCGCAGGGTTCCGAGAAGATAAATGAAGAAGGAGCCATTGAGACGAAGGTTGAAACAGTAGATGAGCGGTCACCGCCGGGGCAGAGCGAGGAGCCCAGAAATGAAAAGACAACGGTTGTGCATTTAACTCGAAAGCAACGAGATGATAGCCAAGGGCGTGGGGTTTTGGGCAGTGCGGCCGCTGCTGTGGCGAATACTCTTCGTTCTGCTAAGGATGCGATTTTTGGTAAGGGGAAAGAGAGGAACGATGACTGA

Protein sequence

MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSAAAAVANTLRSAKDAIFGKGKERNDD
Homology
BLAST of CmaCh12G005680 vs. ExPASy TrEMBL
Match: A0A067LC75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 4  SQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSAA 63
          SQG+E++NEEGAIETKV+TVD RS   Q EEP  EK  VVHLTR++RD   G G+L   A
Sbjct: 3  SQGTERVNEEGAIETKVDTVDYRSSAAQ-EEPNKEKVGVVHLTRQKRDSGSGDGILARTA 62

Query: 64 AAVANTLRSAKDAIFGKGKERN 86
          AAV NTLRSAKDA+ G+GK+++
Sbjct: 63 AAVTNTLRSAKDAVVGRGKDKD 83

BLAST of CmaCh12G005680 vs. ExPASy TrEMBL
Match: A0A6A1W5Z9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1   MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLG 60
           M++S+G+E++NE+GAIETKVET D RSP GQ +EP+ E  TVVHLTR +   S G   + 
Sbjct: 93  MNKSKGTEEVNEQGAIETKVETQDHRSPAGQDKEPKTENVTVVHLTRDEGRSSVGGSAMA 152

Query: 61  SAAAAVANTLRSAKDAIFGKGKE 84
             A A ANT+RSAK+AIFG GK+
Sbjct: 153 GTATAAANTIRSAKEAIFGGGKD 175

BLAST of CmaCh12G005680 vs. ExPASy TrEMBL
Match: A0A7J7CPR1 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00219 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.1e-14
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 3  QSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSA 62
          +S+G+E+INE+GA+ETKVETVD +SP G+ ++PR EK  VVHL R         GVL  A
Sbjct: 2  ESKGTERINEQGAVETKVETVDYQSPAGEDKDPRLEKVGVVHLRRDDGRSGNKGGVLAGA 61

Query: 63 AAAVANTLRSAKDAIFGKGKE 84
          AAAVANT +SAK+AI G GK+
Sbjct: 62 AAAVANTFKSAKNAIVGSGKD 82

BLAST of CmaCh12G005680 vs. ExPASy TrEMBL
Match: A0A6A6M7Q3 (SASA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_004982 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 4   SQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSAA 63
           +QG+E++NEE AIETKVET D RSP G  +EP  EK  VVHLTRK R+   G G+LG   
Sbjct: 209 AQGTERVNEE-AIETKVETEDYRSPAGH-DEPTKEKVGVVHLTRKNRESGTGDGLLGRTT 268

Query: 64  AAVANTLRSAKDAIFGKGKERNDD 88
           AAV NT++SAKDAI G+GK+ + +
Sbjct: 269 AAVTNTIKSAKDAILGRGKKNSSN 290

BLAST of CmaCh12G005680 vs. ExPASy TrEMBL
Match: A0A5N5NRJ4 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_002689 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.2e-14
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 3  QSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSA 62
          ++QG+E+INEEG  ETKVETVD R+  GQ  EP +EK  VVHLTR +     G G L SA
Sbjct: 2  KTQGTERINEEGEAETKVETVDHRTSAGQG-EPTDEKVGVVHLTRNKTGSGSGGGFLSSA 61

Query: 63 AAAVANTLRSAKDAIFGKGKERN 86
          AAAV NT +SAKDAI G G + N
Sbjct: 62 AAAVTNTFKSAKDAIMGGGSKHN 83

BLAST of CmaCh12G005680 vs. NCBI nr
Match: KAG6585682.1 (hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020595.1 hypothetical protein SDJN02_17281 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 9.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 1  MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLG 60
          MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQ DDSQGRGVLG
Sbjct: 1  MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQGDDSQGRGVLG 60

Query: 61 SAAAAVANTLRSAKDAIFGKGKERNDD 88
          SAAAAVANTLRSAKDAIFGKGKERNDD
Sbjct: 61 SAAAAVANTLRSAKDAIFGKGKERNDD 87

BLAST of CmaCh12G005680 vs. NCBI nr
Match: KDP41684.1 (hypothetical protein JCGZ_16091 [Jatropha curcas])

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-17
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 4  SQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSAA 63
          SQG+E++NEEGAIETKV+TVD RS   Q EEP  EK  VVHLTR++RD   G G+L   A
Sbjct: 3  SQGTERVNEEGAIETKVDTVDYRSSAAQ-EEPNKEKVGVVHLTRQKRDSGSGDGILARTA 62

Query: 64 AAVANTLRSAKDAIFGKGKERN 86
          AAV NTLRSAKDA+ G+GK+++
Sbjct: 63 AAVTNTLRSAKDAVVGRGKDKD 83

BLAST of CmaCh12G005680 vs. NCBI nr
Match: KAB1220313.1 (hypothetical protein CJ030_MR3G019059 [Morella rubra])

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1   MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLG 60
           M++S+G+E++NE+GAIETKVET D RSP GQ +EP+ E  TVVHLTR +   S G   + 
Sbjct: 93  MNKSKGTEEVNEQGAIETKVETQDHRSPAGQDKEPKTENVTVVHLTRDEGRSSVGGSAMA 152

Query: 61  SAAAAVANTLRSAKDAIFGKGKE 84
             A A ANT+RSAK+AIFG GK+
Sbjct: 153 GTATAAANTIRSAKEAIFGGGKD 175

BLAST of CmaCh12G005680 vs. NCBI nr
Match: KAG5251227.1 (hypothetical protein IMY05_002G0107300 [Salix suchowensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 1  MHQSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLG 60
          M   QG+E+INEEG  ETKVETVD R+  GQ  EP +EK  VVHLTR +R    G G L 
Sbjct: 1  MKTQQGTERINEEGEAETKVETVDHRTSAGQG-EPTDEKVGVVHLTRNKRGSGSGGGFLS 60

Query: 61 SAAAAVANTLRSAKDAIFGKGKERN 86
          SAAAAV NT +SAKDAI G G + N
Sbjct: 61 SAAAAVTNTFKSAKDAIMGGGSKHN 84

BLAST of CmaCh12G005680 vs. NCBI nr
Match: KAG6784483.1 (hypothetical protein POTOM_010179 [Populus tomentosa])

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-14
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 3  QSQGSEKINEEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQRDDSQGRGVLGSA 62
          ++QG+E+INEEG  ET+VETVD R+  GQ  EP NEK  VVHL R  RD   G G+L SA
Sbjct: 2  KTQGTERINEEGEAETRVETVDHRTSAGQG-EPTNEKVGVVHLKRNTRDSGSGGGILSSA 61

Query: 63 AAAVANTLRSAKDAIF-GKGKE 84
          AAAV NT +SAKDAI  G+GK+
Sbjct: 62 AAAVTNTFKSAKDAIMGGRGKD 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A067LC754.0e-1763.41Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1[more]
A0A6A1W5Z94.4e-1657.83Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1[more]
A0A7J7CPR14.1e-1458.02Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00219 ... [more]
A0A6A6M7Q35.4e-1458.33SASA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_004982 PE=... [more]
A0A5N5NRJ49.2e-1459.04Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_002689 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6585682.19.3e-3798.85hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sorori... [more]
KDP41684.18.2e-1763.41hypothetical protein JCGZ_16091 [Jatropha curcas][more]
KAB1220313.19.1e-1657.83hypothetical protein CJ030_MR3G019059 [Morella rubra][more]
KAG5251227.12.2e-1460.00hypothetical protein IMY05_002G0107300 [Salix suchowensis][more]
KAG6784483.16.5e-1460.98hypothetical protein POTOM_010179 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G005680.1CmaCh12G005680.1mRNA