CmaCh12G005060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G005060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Homeodomain-like superfamily protein
Location	Cma_Chr12: 2616517 .. 2617871 (-)
RNA-Seq Expression	CmaCh12G005060
Synteny	CmaCh12G005060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACCCAAAACCCCTTCTCTCTCTCTCTCTCTCTCTAGGACTTTCCCCTTATAAACCCATTAAAATCTTCATCTTTCCTCCAAAGATCCCATTTTTCCAAACCCCTTTCTCCATCTCTTTCTCCCAAATCATAATCCACTCATAATCTCAAAAGGGTCACCACCTTTTTCCTCGATCTCCTCCAAATTCCCTCCATGTTCACCTCCTCCCATCCCACCACGCCTCCTCCCCTCCCGGACCTCTCCTTGCACATAAGTCCGCCCTCCAATTCCGGCAGCACCGGCAGCGATCTCAGCCATGAAACTGCCGCCGCAACTGGGTTTTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCATGCCGTTCAGCTGCTTGGCGGCCATGAAAGTATATGTTTTGTTGAATTCATATGAAATGCAAATCAAATTCAAATTTTAATGTTTTTTTAAGCTCATTTTGATTGTTTTTTTTTTCTAGGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTACAGGTGGGTTTTGGTTAATTAATTGAAATTAAGGAATTAATCACAAATTATTGAATTTTTTTTCCTTTTTTTTTTAATTTAAAATCTTTTTGTGTTTATTCAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGGTAATTACAATTTTTTTCCTTTTTTGATCTGAAAATTGCTCAAAATTTCAATGATTTAGGGTTTTTTTGATCAATTTTGGTGAAATGGATGCTTTGATTGTTGATGTTAATTTGCATACTCAGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGCTCTTGCATTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAGAAACCCACGAATCAAATTTCGAATTTTTGCGAGAAATTCGTACTATTTTTATATTCAACCGCTATGAGATCAGTAATTCCACGAGCTCGAGCTTCTGCTGACATAAAAACGTCCCCTTTTTCATATCTTCGGATACAACCCATAAGAGTTTACTGAAGTCGTGTTTATGAGCTTAATTTTCAATAACCATATATTATCAAATGGGTCGATGTTATTTATTCTTGATTATCATAATTTATTCTCGAAAT

mRNA sequence

AATACCCAAAACCCCTTCTCTCTCTCTCTCTCTCTCTAGGACTTTCCCCTTATAAACCCATTAAAATCTTCATCTTTCCTCCAAAGATCCCATTTTTCCAAACCCCTTTCTCCATCTCTTTCTCCCAAATCATAATCCACTCATAATCTCAAAAGGGTCACCACCTTTTTCCTCGATCTCCTCCAAATTCCCTCCATGTTCACCTCCTCCCATCCCACCACGCCTCCTCCCCTCCCGGACCTCTCCTTGCACATAAGTCCGCCCTCCAATTCCGGCAGCACCGGCAGCGATCTCAGCCATGAAACTGCCGCCGCAACTGGGTTTTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCATGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGCTCTTGCATTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAGAAACCCACGAATCAAATTTCGAATTTTTGCGAGAAATTCGTACTATTTTTATATTCAACCGCTATGAGATCAGTAATTCCACGAGCTCGAGCTTCTGCTGACATAAAAACGTCCCCTTTTTCATATCTTCGGATACAACCCATAAGAGTTTACTGAAGTCGTGTTTATGAGCTTAATTTTCAATAACCATATATTATCAAATGGGTCGATGTTATTTATTCTTGATTATCATAATTTATTCTCGAAAT

Coding sequence (CDS)

ATGTTCACCTCCTCCCATCCCACCACGCCTCCTCCCCTCCCGGACCTCTCCTTGCACATAAGTCCGCCCTCCAATTCCGGCAGCACCGGCAGCGATCTCAGCCATGAAACTGCCGCCGCAACTGGGTTTTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCATGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGA

Protein sequence

MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM

Homology

[Close]

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = 0


Query: 13  LPDLSLHISPP-----------------SNSGSTGSDLSHETAAATGFYLPAKPHMGLPL 72
           +PDLSL IS P                 S+SGS+ SDLSHE      F+   KP + L  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHE----NNFF--NKPLLSLGF 75

Query: 73  ELETSFNNGRHFNDHLPQIYGRHFKRAA------KMGIRAPRMRWTTTLHAHFVHAVQLL 132
           +     ++ R  N   PQIYGR FKR++      K  IRAPRMRWT+TLHAHFVHAVQLL
Sbjct: 76  D----HHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLL 135

Query: 133 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST 152
           GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +
Sbjct: 136 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-30
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 68  NDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 127
           N H  Q   +  +  AK G+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

Query: 128 DLTLAHVKSHLQMYRTVKSTDKSTALKNQ 157
           DLTLAHVKSHLQMYRT+KST+K T    Q
Sbjct: 203 DLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-29
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 59  TSFNNGRHFNDHLPQIYGRHF--KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERAT 118
           +S +N  + N H   +    F  +  AK  +RAPRMRWTTTLHA FVHAV+LLGGHERAT
Sbjct: 181 SSVSNPNYHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERAT 240

Query: 119 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQ 157
           PKSVLELM+VKDLTLAHVKSHLQMYRTVK+TDK+ A   Q
Sbjct: 241 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQ 280

[Close]

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-28
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 80  KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 139
           K  AK  +RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 315 KLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 374

Query: 140 MYRTVKSTDKSTA 153
           MYRTVKSTDK  A
Sbjct: 375 MYRTVKSTDKPAA 387

[Close]

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 66  HFNDHLPQIYGRHF--KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLEL 125
           H N H   +    F  K   K  +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLEL
Sbjct: 194 HHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLEL 253

Query: 126 MNVKDLTLAHVKSHLQMYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKSSDQ 178
           M+VKDLTLAHVKSHLQMYRTVK+T+K  A    +  +E+  +G E+ +    S+DQ
Sbjct: 254 MDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SSTDQ 307

[Close]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1KS86 (probable transcription factor KAN4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496021 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1KP82 (probable transcription factor KAN4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496021 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1KMR6 (probable transcription factor KAN4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111496021 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1GJN3 (probable transcription factor KAN4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454475 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.2e-88
Identity = 169/178 (94.94%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSH     PLPDLSLHISPPSNSGSTGSDLS+ETA   GFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSH-----PLPDLSLHISPPSNSGSTGSDLSNETA---GFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170

[Close]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1GJP6 (probable transcription factor KAN4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454475 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.2e-88
Identity = 169/178 (94.94%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSH     PLPDLSLHISPPSNSGSTGSDLS+ETA   GFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSH-----PLPDLSLHISPPSNSGSTGSDLSNETA---GFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170

[Close]

BLAST of CmaCh12G005060 vs. NCBI nr
Match: XP_023002008.1 (probable transcription factor KAN4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 2.1e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. NCBI nr
Match: XP_023002009.1 (probable transcription factor KAN4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 2.1e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. NCBI nr
Match: XP_023002010.1 (probable transcription factor KAN4 isoform X3 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 2.1e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of CmaCh12G005060 vs. NCBI nr
Match: XP_023538394.1 (probable transcription factor KAN4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 3.2e-92
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETA-AATGFYLPAKPHMGLPLELET 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETA AA G++LP KPHMGLPLELET
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETATAAAGYFLPPKPHMGLPLELET 60

Query: 61  SFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 120
           SFNNGRHFN HLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS
Sbjct: 61  SFNNGRHFNHHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 120

Query: 121 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179

[Close]

BLAST of CmaCh12G005060 vs. NCBI nr
Match: XP_023538393.1 (probable transcription factor KAN4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 3.2e-92
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETA-AATGFYLPAKPHMGLPLELET 60
           MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETA AA G++LP KPHMGLPLELET
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETATAAAGYFLPPKPHMGLPLELET 60

Query: 61  SFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 120
           SFNNGRHFN HLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS
Sbjct: 61  SFNNGRHFNHHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 120

Query: 121 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179
           VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 179

[Close]

BLAST of CmaCh12G005060 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = 0


Query: 13  LPDLSLHISPP-----------------SNSGSTGSDLSHETAAATGFYLPAKPHMGLPL 72
           +PDLSL IS P                 S+SGS+ SDLSHE      F+   KP + L  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHE----NNFF--NKPLLSLGF 75

Query: 73  ELETSFNNGRHFNDHLPQIYGRHFKRAA------KMGIRAPRMRWTTTLHAHFVHAVQLL 132
           +     ++ R  N   PQIYGR FKR++      K  IRAPRMRWT+TLHAHFVHAVQLL
Sbjct: 76  D----HHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLL 135

Query: 133 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST 152
           GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +
Sbjct: 136 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of CmaCh12G005060 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = 0


Query: 13  LPDLSLHISPP-----------------SNSGSTGSDLSHETAAATGFYLPAKPHMGLPL 72
           +PDLSL IS P                 S+SGS+ SDLSHE      F+   KP + L  
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHE----NNFF--NKPLLSLGF 75

Query: 73  ELETSFNNGRHFNDHLPQIYGRHFKRAA------KMGIRAPRMRWTTTLHAHFVHAVQLL 132
           +     ++ R  N   PQIYGR FKR++      K  IRAPRMRWT+TLHAHFVHAVQLL
Sbjct: 76  D----HHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLL 135

Query: 133 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST 152
           GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +
Sbjct: 136 GGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of CmaCh12G005060 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-31
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 68  NDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 127
           N H  Q   +  +  AK G+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

Query: 128 DLTLAHVKSHLQMYRTVKSTDKSTALKNQ 157
           DLTLAHVKSHLQMYRT+KST+K T    Q
Sbjct: 203 DLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of CmaCh12G005060 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 59  TSFNNGRHFNDHLPQIYGRHF--KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERAT 118
           +S +N  + N H   +    F  +  AK  +RAPRMRWTTTLHA FVHAV+LLGGHERAT
Sbjct: 181 SSVSNPNYHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERAT 240

Query: 119 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQ 157
           PKSVLELM+VKDLTLAHVKSHLQMYRTVK+TDK+ A   Q
Sbjct: 241 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQ 280

[Close]

BLAST of CmaCh12G005060 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 66  HFNDHLPQIYGRHF--KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLEL 125
           H N H   +    F  K   K  +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLEL
Sbjct: 194 HHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLEL 253

Query: 126 MNVKDLTLAHVKSHLQMYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKSSDQ 178
           M+VKDLTLAHVKSHLQMYRTVK+T+K  A    +  +E+  +G E+ +    S+DQ
Sbjct: 254 MDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SSTDQ 307

The following BLAST results are available for this feature:

BLAST of CmaCh12G005060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJV5	1.5e-36	58.64	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q941I2	2.8e-30	74.16	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
Q9C616	3.1e-29	67.00	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q0J235	3.4e-28	84.93	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q93WJ9	2.4e-26	58.62	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of CmaCh12G005060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KS86	1.0e-96	100.00	probable transcription factor KAN4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KP82	1.0e-96	100.00	probable transcription factor KAN4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KMR6	1.0e-96	100.00	probable transcription factor KAN4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GJN3	5.2e-88	94.94	probable transcription factor KAN4 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1GJP6	5.2e-88	94.94	probable transcription factor KAN4 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CmaCh12G005060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002008.1	2.1e-96	100.00	probable transcription factor KAN4 isoform X1 [Cucurbita maxima]	[more]
XP_023002009.1	2.1e-96	100.00	probable transcription factor KAN4 isoform X2 [Cucurbita maxima]	[more]
XP_023002010.1	2.1e-96	100.00	probable transcription factor KAN4 isoform X3 [Cucurbita maxima]	[more]
XP_023538394.1	3.2e-92	96.65	probable transcription factor KAN4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023538393.1	3.2e-92	96.65	probable transcription factor KAN4 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh12G005060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42630.1	1.1e-37	58.64	Homeodomain-like superfamily protein	[more]
AT5G42630.2	1.1e-37	58.64	Homeodomain-like superfamily protein	[more]
AT4G17695.1	2.0e-31	74.16	Homeodomain-like superfamily protein	[more]
AT1G32240.1	2.2e-30	67.00	Homeodomain-like superfamily protein	[more]
AT5G16560.1	1.7e-27	58.62	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 89..146 e-value: 4.7E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..34
None	No IPR available	PANTHER	PTHR31496:SF25	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 14..157
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 90..143 e-value: 7.3E-24 score: 81.9
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 91..142 e-value: 4.9E-6 score: 26.6
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 14..157
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 87..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G005060.1	CmaCh12G005060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding