CmaCh12G004920 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G004920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SAP30_Sin3_bdg domain-containing protein
Location	Cma_Chr12: 2557865 .. 2560500 (+)
RNA-Seq Expression	CmaCh12G004920
Synteny	CmaCh12G004920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACTTGCAAAGCGCCAACACTTCCTATCGCCGTGTTTTTTCTCAGCGAAAAAATCCCAAAAAATTTCCCACTGATCTCTCAAATTCCCACTGTTCTGTTCCCCATTGCATGGCCTTTCTTCTACGTCGATTCCTCCATTTTCATATGTGAATTTCTTCTCTGTTTTTCCCCTTTTTGAGAATCCCCATTTCAGTTTCAGAGATTTGGAAATGATTGAAGCTGTGCAGAGATCCATCAATGGCGCTTTCTCGCAGTTTCAGAGCTGTGGGGATAGCAGCGAGGAGGAGCTTTCGGTTCTTCCTCGCCATACTAAGGTTGTCGTTACCGGAAATAATCGGACCAAATCGGTTCTCGTCGGGCTTCATGGCGTCGTCAAGAAAGCCGTCGGTCTTGGCGGCTGGCATTGGCTGGTATGGATTCTATTAGAAACATTGAATTTCTTTGGATTCTCATTGAATTTCTAAATTCTGTGGTTTTTTAGGGTTAATTTCATGCTTTCTTATCAATGTCTGGCCAATTTCTTGCGTTTTTTCATTTCAATTTTGTGTATCAGATCTTGATTTGTTGATTTTATTTGGGGTTTAGATCGTGTCTCATTGAATTCTAGATTCGAATTCTCCAATTTCTATCTTCTTCTCTTTAGTTGCATGTTCATTTAATCATTGGATCTCGTAATTGTGATAGCTTTTTCATGATTGCTTTGCTTATTAACTTTTGTTTATGCTGATTTAATTTGTTAGATGGAATCATGAGGGGTTTCGATTATTAGGACTGTAAGTTTTGATAATTTTCCATGAATGTGGGTTTGAATTGAGGGGAAATGCAGGTTTTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCGCTTAGTGTGATCGAGGCTCCAACGGGCAATGAAGAAGACGATGAACTCGAATTCGAGAACTCGACATGGAATGGATTGGATATGGGTGAGTTTTGCAGCTGCTGATGGTTCAATGTCTTTGCTCAATCATTTTTCCTTTTCTATTTTTGTTAGCTGTCTTAGAATTGAGTTTATCCTATAATTGTTGCTTGTTTGTGTCTTATGTCTGGCTGTTTTTGGATTGATGTCTTGTTTCTTTCTCTTATTAACTTGTTAGGAGTTAATGATTTGATCATTTGAAGTGAGGATCATTTTTTGCCGCCACCCACCAAATCCCTTTTTGTTGTTGTGGTTTTTATTTTGGTGGGGGAGGAGAACACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACACATTTTAAAAAACGTCAGGTTGACGGTAATACGTAACTGGCCAAAACGGACAATATCTACTGGTGGTAGGTTTGAGGGGTTACAAATAGTATCAGAGCTAGACACTGGACAATGTGCTTGCGAGGAGGGTGGGTACCCAAGGGGGGTGGATTGTGAGATCTTACATCGGTTAGAGAGAATGAAACATTCCTTATAAGGATGTGAAAACCTCTCTCTAGTAGACGTGTTTTATAAATCGTGAGGCTGGCGATATTTGCTGGCGATATTTGCTAGCGATGGATTTGGGAGGTTACAAATGATATCAGAAACAAGACACAGTGCGGTGTGCCAGCAAAGATGCTGGCCCCCAAGTGGGGTGGATTGTGAGATCCCACATCGGTTAGAGAGAGGAACGAAACATTCCTTACAAGGGTGGTCAAAGCAAACAATATCTGCTAGCGGTGGGTTTGCCATGTTTTAGTTTCGAGTCTACCGCGATTAAAGCATAAGAACTTTAACCTTTACAAGTATCTTCACTCCAATTCTTGAAAAGGGTTTCGAAAACGAAAATAAGTTGTAAATTCTTCTCCGACCAGAAGTTGTGGCATTAGGTTGCTATTGATGACAACATAGGATCCTTTGTGAGCTCACTTTATATTTTTTCTTGAATTGTTGTTCTCTTCATGTTCTTTATCCTTTTCTGACCCTTATCACTCATTCACGATAATGCTTTCAACTATTCATTATTCTCAGCATCTGATGACGCCCAAAAATCCCACAAATCAAGGCATAAATTTCACAAATCATGTGGGTCATCACACAAGACTATAAGCAGATCCTTTTCCTGTGACTCACAGTCGAAGAGCTCGGTTTCTGCACCGCAACGATCCATGGTATATTCCTTCAATGGTTTGTACGTCAAAACGTGTTTAGCCTCGTAGTTTGAATCAATTCCCTGATGTATTATCTCTTCCTATGTAGAGGGTTGACCTTAGTAAACTAGAGATGACTGCATTGTGGAGATATTGGCGACACTTCAATCTCGTAAGTTTCGAAGGTCGATTCGGTTCAATAGTCGTTACTACGAAATCTCTTTCTTTACATAGCGATCATTGGGTTTGTGCAGGTTGATGCCTTTCCCAACCCGTCGAAAGAGCAATTAGTAGATCTAGTTCAAAGGCATTTCATGTCACTGGTACTCGACCATGCCTTACTTCCTAAAAACACTATCAGACGATCCTATTTTCACATGGATCGAAAACATTTTTCCTTCTATCTCTATTGATGATTTCTTTCTTTTTTGGTTGCGAAGCAACTGGATGAGTTGCAGGTTATAATGGGTTTTGTGAAGGCTGCAAAGAGACTGAAAACAGTGTGCAAATGA

mRNA sequence

TTCACTTGCAAAGCGCCAACACTTCCTATCGCCGTGTTTTTTCTCAGCGAAAAAATCCCAAAAAATTTCCCACTGATCTCTCAAATTCCCACTGTTCTGTTCCCCATTGCATGGCCTTTCTTCTACGTCGATTCCTCCATTTTCATATGTGAATTTCTTCTCTGTTTTTCCCCTTTTTGAGAATCCCCATTTCAGTTTCAGAGATTTGGAAATGATTGAAGCTGTGCAGAGATCCATCAATGGCGCTTTCTCGCAGTTTCAGAGCTGTGGGGATAGCAGCGAGGAGGAGCTTTCGGTTCTTCCTCGCCATACTAAGGTTGTCGTTACCGGAAATAATCGGACCAAATCGGTTCTCGTCGGGCTTCATGGCGTCGTCAAGAAAGCCGTCGGTCTTGGCGGCTGGCATTGGCTGGTTTTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCGCTTAGTGTGATCGAGGCTCCAACGGGCAATGAAGAAGACGATGAACTCGAATTCGAGAACTCGACATGGAATGGATTGGATATGGCATCTGATGACGCCCAAAAATCCCACAAATCAAGGCATAAATTTCACAAATCATGTGGGTCATCACACAAGACTATAAGCAGATCCTTTTCCTGTGACTCACAGTCGAAGAGCTCGGTTTCTGCACCGCAACGATCCATGAGGGTTGACCTTAGTAAACTAGAGATGACTGCATTGTGGAGATATTGGCGACACTTCAATCTCGTTGATGCCTTTCCCAACCCGTCGAAAGAGCAATTAGTAGATCTAGTTCAAAGGCATTTCATGTCACTGCAACTGGATGAGTTGCAGGTTATAATGGGTTTTGTGAAGGCTGCAAAGAGACTGAAAACAGTGTGCAAATGA

Coding sequence (CDS)

ATGATTGAAGCTGTGCAGAGATCCATCAATGGCGCTTTCTCGCAGTTTCAGAGCTGTGGGGATAGCAGCGAGGAGGAGCTTTCGGTTCTTCCTCGCCATACTAAGGTTGTCGTTACCGGAAATAATCGGACCAAATCGGTTCTCGTCGGGCTTCATGGCGTCGTCAAGAAAGCCGTCGGTCTTGGCGGCTGGCATTGGCTGGTTTTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCGCTTAGTGTGATCGAGGCTCCAACGGGCAATGAAGAAGACGATGAACTCGAATTCGAGAACTCGACATGGAATGGATTGGATATGGCATCTGATGACGCCCAAAAATCCCACAAATCAAGGCATAAATTTCACAAATCATGTGGGTCATCACACAAGACTATAAGCAGATCCTTTTCCTGTGACTCACAGTCGAAGAGCTCGGTTTCTGCACCGCAACGATCCATGAGGGTTGACCTTAGTAAACTAGAGATGACTGCATTGTGGAGATATTGGCGACACTTCAATCTCGTTGATGCCTTTCCCAACCCGTCGAAAGAGCAATTAGTAGATCTAGTTCAAAGGCATTTCATGTCACTGCAACTGGATGAGTTGCAGGTTATAATGGGTTTTGTGAAGGCTGCAAAGAGACTGAAAACAGTGTGCAAATGA

Protein sequence

MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKSRHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDAFPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK

Homology

[Close]

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL
Match: A0A6J1KN45 (uncharacterized protein LOC111496089 OS=Cucurbita maxima OX=3661 GN=LOC111496089 PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.4e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG
Sbjct: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA
Sbjct: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL
Match: A0A6J1GIW5 (uncharacterized protein LOC111454286 OS=Cucurbita moschata OX=3662 GN=LOC111454286 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.0e-117
Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAVQ SINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG
Sbjct: 1   MIEAVQSSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHKFHKSCGSS+KTISRS SCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA
Sbjct: 121 RHKFHKSCGSSNKTISRSLSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL
Match: A0A5A7VFZ9 (Histone deacetylase complex subunit SAP30/SAP30-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005970 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAV+ SING FS  QSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD+LEFEN  WN +DMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNRIDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHK HKS GSSHKT+SRS SCDSQSKSSVSAPQ S +VDLSKLEM ALWRYWRHFNLVDA
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
            PNPSKEQLVDLVQRHFMS QLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL
Match: A0A0A0LNK2 (SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361400 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAV+ SING FS  QSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD+LEFEN  WN +DMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNRIDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHK HKS GSSHKT+SRS SCDSQSKSSVSAPQ S +VDLSKLEM ALWRYWRHFNLVDA
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
            PNPSKEQLVDLVQRHFMS QLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL
Match: A0A1S3BAV7 (uncharacterized protein LOC103487947 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487947 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAV+ SING FS  QSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD+LEFEN  WN +DMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNRIDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHK HKS GSSHKT+SRS SCDSQSKSSVSAPQ S +VDLSKLEM ALWRYWRHFNLVDA
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
            PNPSKEQLVDLVQRHFMS QLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. NCBI nr
Match: XP_023002140.1 (uncharacterized protein LOC111496089 [Cucurbita maxima])

HSP 1 Score: 439.9 bits (1130), Expect = 1.3e-119
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG
Sbjct: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA
Sbjct: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. NCBI nr
Match: XP_023536801.1 (uncharacterized protein LOC111798076 [Cucurbita pepo subsp. pepo] >KAG6585621.1 hypothetical protein SDJN03_18354, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020530.1 hypothetical protein SDJN02_17215 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.3 bits (1118), Expect = 3.3e-118
Identity = 221/223 (99.10%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAVQ SINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG
Sbjct: 1   MIEAVQSSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHKFHKSCGSSHKTISRS SCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA
Sbjct: 121 RHKFHKSCGSSHKTISRSLSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. NCBI nr
Match: XP_022951480.1 (uncharacterized protein LOC111454286 [Cucurbita moschata])

HSP 1 Score: 432.6 bits (1111), Expect = 2.1e-117
Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAVQ SINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG
Sbjct: 1   MIEAVQSSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHKFHKSCGSS+KTISRS SCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA
Sbjct: 121 RHKFHKSCGSSNKTISRSLSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. NCBI nr
Match: XP_004152712.1 (uncharacterized protein LOC101220556 isoform X1 [Cucumis sativus] >XP_008444684.1 PREDICTED: uncharacterized protein LOC103487947 isoform X1 [Cucumis melo] >KAA0065256.1 Histone deacetylase complex subunit SAP30/SAP30-like protein [Cucumis melo var. makuwa] >KGN62574.1 hypothetical protein Csa_022223 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 2.9e-106
Identity = 202/223 (90.58%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAV+ SING FS  QSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD+LEFEN  WN +DMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNRIDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHK HKS GSSHKT+SRS SCDSQSKSSVSAPQ S +VDLSKLEM ALWRYWRHFNLVDA
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
            PNPSKEQLVDLVQRHFMS QLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. NCBI nr
Match: XP_038883974.1 (uncharacterized protein LOC120074938 isoform X1 [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.2e-105
Identity = 201/223 (90.13%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 1   MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVG 60
           MIEAV+ SING FS  QSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVG
Sbjct: 1   MIEAVESSINGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKS 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD+LEFEN  WNG+DMASDDAQKSHKS
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDMASDDAQKSHKS 120

Query: 121 RHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDA 180
           RHK HKS GSSHKT+SRS SCDSQSKSSVSA Q S +VDLSKLEM ALWRYWRHFNLV A
Sbjct: 121 RHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGSTKVDLSKLEMAALWRYWRHFNLVGA 180

Query: 181 FPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
            PNPSKEQLVDLVQRHFMS QLDELQVIMGFVKAAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 223

[Close]

BLAST of CmaCh12G004920 vs. TAIR 10
Match: AT1G19330.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 316.6 bits (810), Expect = 1.6e-86
Identity = 170/227 (74.89%), Postives = 189/227 (83.26%), Query Frame = 0


Query: 1   MIEAVQRS--INGAFSQFQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVK 60
           M+EAV  S  +NG F Q QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVK
Sbjct: 1   MLEAVDSSGVVNGGFPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60

Query: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQK 120
           KAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDD+L+FEN+  NG DM S+D  K
Sbjct: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMTSEDTLK 120

Query: 121 SHKSRHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFN 180
            HKS+ +  +S  SSHKT+SRS S DSQSKSS   P  +M+VDLSKLEM AL  YWRHFN
Sbjct: 121 PHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLNYWRHFN 180

Query: 181 LVDAFPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           LVDA PNPSKEQL+D+VQRHFMS Q+DELQVI+GFV+AAKR+K  CK
Sbjct: 181 LVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 227

[Close]

BLAST of CmaCh12G004920 vs. TAIR 10
Match: AT1G19330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 312.0 bits (798), Expect = 3.9e-85
Identity = 171/232 (73.71%), Postives = 190/232 (81.90%), Query Frame = 0


Query: 1   MIEAVQRS--INGAFSQFQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVK 60
           M+EAV  S  +NG F Q QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVK
Sbjct: 1   MLEAVDSSGVVNGGFPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60

Query: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDM-----AS 120
           KAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDD+L+FEN+  NG DM     AS
Sbjct: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSFPAS 120

Query: 121 DDAQKSHKSRHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRY 180
           +D  K HKS+ +  +S  SSHKT+SRS S DSQSKSS   P  +M+VDLSKLEM AL  Y
Sbjct: 121 EDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLNY 180

Query: 181 WRHFNLVDAFPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           WRHFNLVDA PNPSKEQL+D+VQRHFMS Q+DELQVI+GFV+AAKR+K  CK
Sbjct: 181 WRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 232

[Close]

BLAST of CmaCh12G004920 vs. TAIR 10
Match: AT1G19330.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1). )

HSP 1 Score: 307.4 bits (786), Expect = 9.6e-84
Identity = 170/233 (72.96%), Postives = 190/233 (81.55%), Query Frame = 0


Query: 1   MIEAVQRS--INGAFSQFQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVK 60
           M+EAV  S  +NG F Q QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVK
Sbjct: 1   MLEAVDSSGVVNGGFPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60

Query: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDM-----AS 120
           KAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDD+L+FEN+  NG DM     AS
Sbjct: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSFPAS 120

Query: 121 DDAQKSHKSRHKFHKSCGSSHKTISRSFSCDSQSKSS-VSAPQRSMRVDLSKLEMTALWR 180
           +D  K HKS+ +  +S  SSHKT+SRS S DSQSKSS  + P+   +VDLSKLEM AL  
Sbjct: 121 EDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPALLN 180

Query: 181 YWRHFNLVDAFPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           YWRHFNLVDA PNPSKEQL+D+VQRHFMS Q+DELQVI+GFV+AAKR+K  CK
Sbjct: 181 YWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 233

[Close]

BLAST of CmaCh12G004920 vs. TAIR 10
Match: AT1G75060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-78
Identity = 153/217 (70.51%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 11  GAFSQFQSC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLV 70
           G FSQ QSC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVGLGGWHWLV
Sbjct: 17  GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query: 71  LTNGIEVKLQRNALSVIEAPTGNEEDDELEFENST-WN-GLDMASDDAQKSHKSRHKFHK 130
           LTNGIEVKLQRNALSV+E PTGNEED++LE ++ST WN   DM ++D  K HKS+ + H+
Sbjct: 77  LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query: 131 SCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDAFPNPSK 190
           S   S K + R  SCDS SK S   P+ +M+VDL+KL+M AL RYWRHFNLVDA PNP+K
Sbjct: 137 SSRLSQKALYREVSCDSHSKISSITPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPTK 196

Query: 191 EQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           EQL+D++QRHFMS Q+DELQVI+GFV+AA  +K  C+
Sbjct: 197 EQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233

[Close]

BLAST of CmaCh12G004920 vs. TAIR 10
Match: AT1G75060.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-76
Identity = 153/217 (70.51%), Postives = 177/217 (81.57%), Query Frame = 0


Query: 11  GAFSQFQSC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLV 70
           G FSQ QSC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGL GVVKKAVGLGGWHWLV
Sbjct: 17  GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query: 71  LTNGIEVKLQRNALSVIEAPTGNEEDDELEFENST-WN-GLDMASDDAQKSHKSRHKFHK 130
           LTNGIEVKLQRNALSV+E PTGNEED++LE ++ST WN   DM ++D  K HKS+ + H+
Sbjct: 77  LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query: 131 SCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDAFPNPSK 190
           S   S K + R  SCDS SK S   P+ +M VDL+KL+M AL RYWRHFNLVDA PNP+K
Sbjct: 137 SSRLSQKALYREVSCDSHSKISSITPRLNM-VDLTKLDMAALLRYWRHFNLVDALPNPTK 196

Query: 191 EQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 224
           EQL+D++QRHFMS Q+DELQVI+GFV+AA  +K  C+
Sbjct: 197 EQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 232

The following BLAST results are available for this feature:

BLAST of CmaCh12G004920 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G004920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KN45	6.4e-120	100.00	uncharacterized protein LOC111496089 OS=Cucurbita maxima OX=3661 GN=LOC111496089...	[more]
A0A6J1GIW5	1.0e-117	98.65	uncharacterized protein LOC111454286 OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A5A7VFZ9	1.4e-106	90.58	Histone deacetylase complex subunit SAP30/SAP30-like protein OS=Cucumis melo var...	[more]
A0A0A0LNK2	1.4e-106	90.58	SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361...	[more]
A0A1S3BAV7	1.4e-106	90.58	uncharacterized protein LOC103487947 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmaCh12G004920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002140.1	1.3e-119	100.00	uncharacterized protein LOC111496089 [Cucurbita maxima]	[more]
XP_023536801.1	3.3e-118	99.10	uncharacterized protein LOC111798076 [Cucurbita pepo subsp. pepo] >KAG6585621.1 ...	[more]
XP_022951480.1	2.1e-117	98.65	uncharacterized protein LOC111454286 [Cucurbita moschata]	[more]
XP_004152712.1	2.9e-106	90.58	uncharacterized protein LOC101220556 isoform X1 [Cucumis sativus] >XP_008444684....	[more]
XP_038883974.1	3.2e-105	90.13	uncharacterized protein LOC120074938 isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh12G004920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19330.2	1.6e-86	74.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19330.1	3.9e-85	73.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19330.3	9.6e-84	72.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G75060.1	4.6e-78	70.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G75060.2	1.9e-76	70.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain	PFAM	PF13867	SAP30_Sin3_bdg	coord: 163..216 e-value: 8.3E-21 score: 74.0
IPR038291	SAP30, C-terminal domain superfamily	GENE3D	6.10.160.20		coord: 138..223 e-value: 1.2E-26 score: 94.4
None	No IPR available	PANTHER	PTHR13286:SF10	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN	coord: 1..223
IPR024145	Histone deacetylase complex subunit SAP30/SAP30-like	PANTHER	PTHR13286	SAP30	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G004920.1	CmaCh12G004920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000118	histone deacetylase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003712	transcription coregulator activity