CmaCh12G004690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G004690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein RADIALIS-like 4
Location	Cma_Chr12: 2436526 .. 2438011 (+)
RNA-Seq Expression	CmaCh12G004690
Synteny	CmaCh12G004690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAAGAGGCACTCACAGCCTACATTCACACCAGAACCTTGACTTAACTCCTCGCTTACAAGAGGCACTCAGAGCCTACATTCCCAGCTTTCCTTCCAAACTCCCTTAATATAATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTACATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAACGTGCTATCTATCTACTCCTAAGCGTCTTTTTATGTCATATGTCAAGTCTCTATCCTACTTTCATCCTCGAAAAGTCATCCAAATCTCTGAGTATTTAGTTCATAGGGGAAAAGACATTCAAAATAACGTGGTTCTTACAAGAATAGATATTCGATGTTAACAGTAGAACAGAACTTCCATCAGCCTTACGAAATTGTTAAGAATTACAAATCTACGCTATGGTATAATATTGTCCACTTTGAACGTAAGCTCTCGTGGTTTTACTTTAAACTTTCCAAAAGGCCTCATACCAATGGAGATAGTATTTCTTACTTATAAACCCATGATCATTCCCTCAACAATTTCTTCGATCGAATAATAGTATACCTTTTCGTTCAATCCGTGTAGCTTTGTTTTTGTTATCATCTAAAAAGAACTTGTACCAATAGAGAAGTTTTCATTTACTTAAAAGAAGTTCTTCTAAATACATTCATGCATTCCCACAATCTCTCATGCTTTTCTAAGTTGCATGCACATGGTCCTGTATTTCTGAATTCAGACATCTACGTATTTATCCATCCCTTCTTTAACATTTGAATCTACTTCAGTACTTGGCCACAAAAACTGATTAAAAAAACTGGCAAAACTGACATGGGTGGATTAATTAAGCATCAAGTATGCCCGAGAACTCGCCTTAAAGTATAGCTCTGCTTCCTTGCAGATCAACTGTCCATATATTCACATTTAGAAACATTTAGCTAATCTTTCCATCGTTCTCTCTTTGAACTATTGTTGCAGGCTCATGAAAAATCTAAAGCTCCAATAAGGGAAGGTATTAGACCGATGATGTAATAAGAGCTGCAGAAGCGCTGTTCTCGAAAATTACAGGAATATGGCTGGGTGTCAGTGTTCTTTATTTTCACGCCCTGTTGGTCCTTTCTAGCATAGATTGCTAAACTATTGGTAACATGTGTAGCCTAAACTAAAGTTAAGTCGTAACCTGTTTGTTCTTGTACCTGATAATTCTGCTTTTGTGTACTTGTATGATTACTGTTTCATTCGCTTTCCAATCATTAAAAAAAAGAAAAGAAAAAGCAAAGAATATATAT

mRNA sequence

TATATAAGAGGCACTCACAGCCTACATTCACACCAGAACCTTGACTTAACTCCTCGCTTACAAGAGGCACTCAGAGCCTACATTCCCAGCTTTCCTTCCAAACTCCCTTAATATAATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTACATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAAGGGAAGGTATTAGACCGATGATGTAATAAGAGCTGCAGAAGCGCTGTTCTCGAAAATTACAGGAATATGGCTGGGTGTCAGTGTTCTTTATTTTCACGCCCTGTTGGTCCTTTCTAGCATAGATTGCTAAACTATTGGTAACATGTGTAGCCTAAACTAAAGTTAAGTCGTAACCTGTTTGTTCTTGTACCTGATAATTCTGCTTTTGTGTACTTGTATGATTACTGTTTCATTCGCTTTCCAATCATTAAAAAAAAGAAAAGAAAAAGCAAAGAATATATAT

Coding sequence (CDS)

ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTACATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA

Protein sequence

MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ

Homology

[Close]

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-26
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 8   SSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
           SS SSSS+WT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4   SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68  IESGKVPLPKYKPITSNSIVCGDEQ---RLMKNLKLQ 102
           IE   VPLPKYK +   S   G +    RLMKN+++Q
Sbjct: 64  IEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-26
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1   MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGD-EQRLMKNLKL 101
           LV DL++IE+G+VPLP YK   SNS    D + R MKNLK+
Sbjct: 61  LVEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-24
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS +  S GS S  WT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYGSGS--WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSI--VCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P YK  T NS      DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++   S  SS +WT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCG---DEQRLMKNLKLQ 102
           LV D+  IE+G VP P Y+  TS     G    E++ M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYR--TSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 8   SSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
           S+  S   W+ K+NK FE ALA Y +DTPDRW  VARAV G+T EEVK+HY+ILV D+ +
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68  IESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           IESGKVP P Y+  T+   +  DE+R  +NLK++
Sbjct: 63  IESGKVPFPNYR--TTGGNMKTDEKR-FRNLKIR 93

[Close]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL
Match: A0A6J1KJV3 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL
Match: A0A6J1GIE7 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++F+SSG+SSS+WT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           L+ DLMHIESGKVPLP YKP+  N  +  DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. NCBI nr
Match: XP_023002562.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 3.8e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. NCBI nr
Match: XP_023538249.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. NCBI nr
Match: XP_022951683.1 (protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. NCBI nr
Match: KAG6585593.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 8.3e-45
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQR 94
          LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of CmaCh12G004690 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSS+WTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 120.2 bits (300), Expect = 9.8e-28
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 8   SSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
           SS SSSS+WT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4   SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68  IESGKVPLPKYKPITSNSIVCGDEQ---RLMKNLKLQ 102
           IE   VPLPKYK +   S   G +    RLMKN+++Q
Sbjct: 64  IEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CmaCh12G004690 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1   MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGD-EQRLMKNLKL 101
           LV DL++IE+G+VPLP YK   SNS    D + R MKNLK+
Sbjct: 61  LVEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CmaCh12G004690 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-25
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1  MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPITSNS 86
          LV DL++IE+G+VPLP YK   SNS
Sbjct: 61 LVEDLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of CmaCh12G004690 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-25
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS +  S GS S  WT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYGSGS--WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSI--VCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P YK  T NS      DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of CmaCh12G004690 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 107.1 bits (266), Expect = 8.6e-24
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++   S  SS +WT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCG---DEQRLMKNLKLQ 102
           LV D+  IE+G VP P Y+  TS     G    E++ M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYR--TSGGCTNGRLSQEEKRMRNMRLQ 100

The following BLAST results are available for this feature:

BLAST of CmaCh12G004690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.4e-26	64.95	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1A173	3.1e-26	64.36	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q9SIJ5	8.4e-24	58.25	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	1.2e-22	53.85	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	1.5e-20	54.26	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of CmaCh12G004690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJV3	1.9e-50	100.00	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1	[more]
A0A6J1GIE7	2.1e-49	98.02	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1	[more]
A0A6J1K2Q1	2.4e-42	86.14	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	2.4e-42	86.14	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A1S3BBS2	3.3e-39	81.19	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]

BLAST of CmaCh12G004690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002562.1	3.8e-50	100.00	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_023538249.1	1.5e-49	99.01	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022951683.1	4.2e-49	98.02	protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like...	[more]
KAG6585593.1	8.3e-45	97.85	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961874.1	5.0e-42	86.14	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of CmaCh12G004690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	9.8e-28	64.95	RAD-like 5	[more]
AT1G75250.2	2.2e-27	64.36	RAD-like 6	[more]
AT1G75250.1	3.5e-25	68.24	RAD-like 6	[more]
AT2G21650.1	5.9e-25	58.25	Homeodomain-like superfamily protein	[more]
AT4G39250.1	8.6e-24	53.85	RAD-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.8E-8 score: 43.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.341778
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..58 e-value: 2.44179E-7 score: 41.7922
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 6.6E-7 score: 29.4
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 5.9E-24 score: 85.6
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G004690.1	CmaCh12G004690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity