CmaCh12G004610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G004610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CBS domain-containing protein CBSX3, mitochondrial-like
Location	Cma_Chr12: 2411428 .. 2412490 (-)
RNA-Seq Expression	CmaCh12G004610
Synteny	CmaCh12G004610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGGATGGTAAGAGCAGTACGATCGTGGCAAGAGACACTGAAGATCGCTATCTCGCAGCACTCGTGCAGGAGAGAAACGAATCAAGTGGAGAAGCTTTTCAAAGGATCCGACATAGGAGCTTCATCTTCTATGCTGAAAGGTTTGGAGAACATTTCAGTGGCGGAGATCATTTCGAGTAAGGGAGATGGAAGTATTGGCTCCCCTTGGCTATCCTGTCGAGCCGATGACACCGCCATTGATGCCGTGCAAAATGTAGTGAGTTTGGTTGAGTTTACATTTCCAAAAGCTTGAAAGGTTATCTCTGAAGATTGAGGACTCTTTTTCTGTTGATGCAGATGGCTAGAAATAATATTGGATCGTTGGTGGTGCTGAAGCCTGAAGGACAACACATTGCTGGAATTGTAACAGAACGAGGTAAATCAAACGCCAAACAATTTCAAAAACATGGATTAGAAAATTTTAAACTTATCAAGAAAACTAATAAGCAAATATTAGCAGACTATCTGAAGAAGATAATAGCAGATGGAAGATCTCCCATATACACAAAAGTTGGGGAAATAATGACTTCTGAGGTTAATTTCTGTCTTCCCTAAGCTAAAAGCCAGATTTCAAACAACATTTCGCATTCATACATTTCTATTTTTCATGAACAGGACAAGCTAGTAAGCGTAACATCCGACACGAACATCCTTAAAGCAATGCAGCTAATGACAGGTAAATACTAAATACAGAGTCGTTTATGTTCTGAAATTACCATGAAAATGGGAGTCAGCTCGTTCTCCAGCTGCATCAACGACCATCTAAGTTTTCGACATTTGCAGAGAATCGCATACGACACGTTCCTGTGATAGATGGCAAACTAGTTGGCATGATTTCTATAGTAGATGTTGTCAGAGCAGTGGTAGAGCAGCAAAATGGGGAACTCAAACGACTGAATGAGTATATAAAAGGAGAATACTATTGAGAATTATGAACATTGATGAACATATGATTCTATACTACTGTAAAAGCAAGCTTGCTTATACCATGTAAAGCAAACAAGAAAACAAATCAAAAG

mRNA sequence

ATGCAGGGGATGGTAAGAGCAGTACGATCGTGGCAAGAGACACTGAAGATCGCTATCTCGCAGCACTCGTGCAGGAGAGAAACGAATCAAGTGGAGAAGCTTTTCAAAGGATCCGACATAGGAGCTTCATCTTCTATGCTGAAAGGTTTGGAGAACATTTCAGTGGCGGAGATCATTTCGAGTAAGGGAGATGGAAGTATTGGCTCCCCTTGGCTATCCTGTCGAGCCGATGACACCGCCATTGATGCCGTGCAAAATATGGCTAGAAATAATATTGGATCGTTGGTGGTGCTGAAGCCTGAAGGACAACACATTGCTGGAATTGTAACAGAACGAGACTATCTGAAGAAGATAATAGCAGATGGAAGATCTCCCATATACACAAAAGTTGGGGAAATAATGACTTCTGAGGACAAGCTAGTAAGCGTAACATCCGACACGAACATCCTTAAAGCAATGCAGCTAATGACAGAGAATCGCATACGACACGTTCCTGTGATAGATGGCAAACTAGTTGGCATGATTTCTATAGTAGATGTTGTCAGAGCAGTGGTAGAGCAGCAAAATGGGGAACTCAAACGACTGAATGAGTATATAAAAGGAGAATACTATTGAGAATTATGAACATTGATGAACATATGATTCTATACTACTGTAAAAGCAAGCTTGCTTATACCATGTAAAGCAAACAAGAAAACAAATCAAAAG

Coding sequence (CDS)

ATGCAGGGGATGGTAAGAGCAGTACGATCGTGGCAAGAGACACTGAAGATCGCTATCTCGCAGCACTCGTGCAGGAGAGAAACGAATCAAGTGGAGAAGCTTTTCAAAGGATCCGACATAGGAGCTTCATCTTCTATGCTGAAAGGTTTGGAGAACATTTCAGTGGCGGAGATCATTTCGAGTAAGGGAGATGGAAGTATTGGCTCCCCTTGGCTATCCTGTCGAGCCGATGACACCGCCATTGATGCCGTGCAAAATATGGCTAGAAATAATATTGGATCGTTGGTGGTGCTGAAGCCTGAAGGACAACACATTGCTGGAATTGTAACAGAACGAGACTATCTGAAGAAGATAATAGCAGATGGAAGATCTCCCATATACACAAAAGTTGGGGAAATAATGACTTCTGAGGACAAGCTAGTAAGCGTAACATCCGACACGAACATCCTTAAAGCAATGCAGCTAATGACAGAGAATCGCATACGACACGTTCCTGTGATAGATGGCAAACTAGTTGGCATGATTTCTATAGTAGATGTTGTCAGAGCAGTGGTAGAGCAGCAAAATGGGGAACTCAAACGACTGAATGAGTATATAAAAGGAGAATACTATTGA

Protein sequence

MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIISSKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDVVRAVVEQQNGELKRLNEYIKGEYY

Homology

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BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot
Match: Q9LEV3 (CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CBSX3 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 99/207 (47.83%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLK--GLENISVAEI 60
           MQG++R+  S    +K ++ QH           +F         + ++  G E+ +++++
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 61  ISSKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKP-EGQHIAGIVTERDYLKK 120
           + SKG  + GS WL C  DDT  DAV++M ++N+G+LVV+KP E Q +AGI+TERDYL+K
Sbjct: 61  MKSKGKSADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRK 120

Query: 121 IIADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGK-LVGMIS 180
           II  GRS   TKVG+IMT E+KL++VT +T +L+AMQLMT+NRIRH+PVI  K ++GM+S
Sbjct: 121 IIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVS 180

Query: 181 IVDVVRAVVEQQNGELKRLNEYIKGEY 204
           I DVVRAVV +   EL+RLN YI+G Y
Sbjct: 181 IGDVVRAVVHEHREELQRLNAYIQGGY 206

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BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot
Match: P32987 (Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens OX=2283 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 79  TAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTSED 138
           T  +A + M  +N+GSLVV+  + + + GI+TERD +K   A     I + V + MT + 
Sbjct: 21  TIAEAAKEMKEHNLGSLVVIDSQNR-VVGIITERDIVK---AASNRDIDSPVEKYMTKDV 80

Query: 139 KLVSVTSDTNILKAMQLMTENRIRHVPVI--DGKLVGMISIVDVVRAVVEQQNGELKRLN 198
           K   VT DT +  A+ +M  N  RH+P+I  +GKL G++SI D+ RA+++    +  +  
Sbjct: 81  K--GVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGKPA 139

Query: 199 EYIKG 202
           E +KG
Sbjct: 141 EEVKG 139

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BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot
Match: P50100 (Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=MK0525 PE=4 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-12
Identity = 44/156 (28.21%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 50  LENISVAEIISSKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIV 109
           + ++SV E+  ++ D   GSP       +TA++    M  + IGS+V++  + + I GI+
Sbjct: 1   MRSVSVGEV--ARRDVITGSP------TETAVEIAYKMREHGIGSVVIVNEKDEPI-GII 60

Query: 110 TERDYLKKIIADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVID- 169
           TERD + K+++ G++P      +IM+    +++V  D  + +A++LM +  IR +P++D 
Sbjct: 61  TERDLVIKVVSQGKNPDEVIARDIMS--QPVITVEEDMEVNEAVKLMVDKGIRRLPIVDD 120

Query: 170 -GKLVGMISIVDVVRA---VVEQQNGELKRLNEYIK 201
            GKL+G++++ D+++    +V     E+K+  E ++
Sbjct: 121 NGKLIGIVTMQDILQVEPYLVATIEEEMKKFQEELE 145

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BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot
Match: Q9SJQ5 (CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana OX=3702 GN=CBSCBSPB2 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-09
Identity = 34/107 (31.78%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 72  LSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVG 131
           L+     T  DA + MA   + + V+L      ++GIVT++D   ++IA+G  P +T V 
Sbjct: 71  LTINEGTTVFDACRRMAARRVDA-VLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVS 130

Query: 132 EIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVID-GKLVGMISI 178
           ++MT     + VTSD+  ++A+Q M + + RH+PV++ G+++ ++ I
Sbjct: 131 KVMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDI 174

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BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot
Match: Q9LF97 (CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana OX=3702 GN=CBSCBSPB3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-08
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 79  TAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTSED 138
           T  DA + MA   + +  +L      ++GIVT++D   ++IA+G  P  T V ++MT   
Sbjct: 80  TVFDACRRMAARRVDA-CLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNP 139

Query: 139 KLVSVTSDTNILKAMQLMTENRIRHVPVID-GKLVGMISI 178
             + VTSD+  L+A+Q M + + RH+PV++ G+++ ++ I
Sbjct: 140 --IFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDI 176

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BLAST of CmaCh12G004610 vs. ExPASy TrEMBL
Match: A0A6J1KTQ7 (CBS domain-containing protein CBSX3, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111496322 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.8e-106
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS
Sbjct: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

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BLAST of CmaCh12G004610 vs. ExPASy TrEMBL
Match: A0A6J1GJI0 (CBS domain-containing protein CBSX3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454421 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.7e-104
Identity = 199/204 (97.55%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRAVRSWQETLKIAISQHSCRRETNQVEKLFKGS++GASSSMLKGLENISVAEI+S
Sbjct: 1   MQGIVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSNLGASSSMLKGLENISVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRADDTAI AVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRADDTAIVAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

[Close]

BLAST of CmaCh12G004610 vs. ExPASy TrEMBL
Match: A0A6J1HF98 (CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462506 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.8e-89
Identity = 172/204 (84.31%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRA+RSWQETLKIA S HSCRRETNQVEK+ +GS+   SSS LKGLENI+VAEI+S
Sbjct: 1   MQGIVRAIRSWQETLKIANSHHSCRRETNQVEKILEGSESRGSSSPLKGLENITVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
             GDGSIGS W SC ADD AID VQNMARNN+GSLVVLKPEGQHIAGIVTE DYLKKIIA
Sbjct: 61  RNGDGSIGSSWFSCSADDAAIDTVQNMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGR PIYTKVGEIMT EDKLV+VTSDTNILKAMQLMTENRIRHVPVIDGKLVG+IS+VDV
Sbjct: 121 DGRCPIYTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRIRHVPVIDGKLVGIISVVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           V+AVV+QQNGEL+RLNEYIKGE Y
Sbjct: 181 VKAVVKQQNGELERLNEYIKGESY 204

[Close]

BLAST of CmaCh12G004610 vs. ExPASy TrEMBL
Match: A0A6J1HD27 (CBS domain-containing protein CBSX3, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462506 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.5e-88
Identity = 172/205 (83.90%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRA+RSWQETLKIA S HSCRRETNQVEK+ +GS+   SSS LKGLENI+VAEI+S
Sbjct: 1   MQGIVRAIRSWQETLKIANSHHSCRRETNQVEKILEGSESRGSSSPLKGLENITVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQN-MARNNIGSLVVLKPEGQHIAGIVTERDYLKKII 120
             GDGSIGS W SC ADD AID VQN MARNN+GSLVVLKPEGQHIAGIVTE DYLKKII
Sbjct: 61  RNGDGSIGSSWFSCSADDAAIDTVQNVMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKII 120

Query: 121 ADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVD 180
           ADGR PIYTKVGEIMT EDKLV+VTSDTNILKAMQLMTENRIRHVPVIDGKLVG+IS+VD
Sbjct: 121 ADGRCPIYTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRIRHVPVIDGKLVGIISVVD 180

Query: 181 VVRAVVEQQNGELKRLNEYIKGEYY 205
           VV+AVV+QQNGEL+RLNEYIKGE Y
Sbjct: 181 VVKAVVKQQNGELERLNEYIKGESY 205

[Close]

BLAST of CmaCh12G004610 vs. ExPASy TrEMBL
Match: A0A6J1K5H5 (CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491856 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 169/204 (82.84%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQ +V+A+RSWQETLKIA SQHSCRRETNQVEK  +GS+   SSS LKG+ENI+VAEI+S
Sbjct: 43  MQAIVKALRSWQETLKIANSQHSCRRETNQVEKFLEGSESRGSSSPLKGMENITVAEIVS 102

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
            KGDGSIGS W SC ADD AID VQNMARNN+GSLVVLKPEGQHIAGIVTE DYLKKIIA
Sbjct: 103 RKGDGSIGSSWFSCSADDAAIDTVQNMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKIIA 162

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGR PI+TKVGEIMT EDKLV+VTSDTNILKAMQLMTENR RHVPVIDGKLVGMISIVDV
Sbjct: 163 DGRCPIFTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRTRHVPVIDGKLVGMISIVDV 222

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           V+AVV+QQNGEL+++NEYIKGE Y
Sbjct: 223 VKAVVKQQNGELEQINEYIKGESY 246

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BLAST of CmaCh12G004610 vs. NCBI nr
Match: XP_023002498.1 (CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 394.4 bits (1012), Expect = 5.8e-106
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS
Sbjct: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

[Close]

BLAST of CmaCh12G004610 vs. NCBI nr
Match: XP_023538057.1 (CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.3 bits (996), Expect = 4.2e-104
Identity = 199/204 (97.55%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRAVRSWQETLKIAISQHSCRRETNQVEKLF+GSD+GASSSMLKGLENISVAEI+S
Sbjct: 1   MQGIVRAVRSWQETLKIAISQHSCRRETNQVEKLFEGSDLGASSSMLKGLENISVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRA+DTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRANDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

[Close]

BLAST of CmaCh12G004610 vs. NCBI nr
Match: XP_022951679.1 (CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 199/204 (97.55%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRAVRSWQETLKIAISQHSCRRETNQVEKLFKGS++GASSSMLKGLENISVAEI+S
Sbjct: 1   MQGIVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSNLGASSSMLKGLENISVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRADDTAI AVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRADDTAIVAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

[Close]

BLAST of CmaCh12G004610 vs. NCBI nr
Match: KAG6585586.1 (CBS domain-containing protein CBSX3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020501.1 CBS domain-containing protein CBSX3, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 195/204 (95.59%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQ +VRAVRSWQETLKIAISQHSCRRETNQVEKLF+GS++GASSS+LKGLENI VAEI+S
Sbjct: 1   MQVIVRAVRSWQETLKIAISQHSCRRETNQVEKLFEGSNLGASSSILKGLENILVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
           SKGDGSIGSPWLSCRA+DTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA
Sbjct: 61  SKGDGSIGSPWLSCRANDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV
Sbjct: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           VRAVVEQQNGELKRLNEYIKGEYY
Sbjct: 181 VRAVVEQQNGELKRLNEYIKGEYY 204

[Close]

BLAST of CmaCh12G004610 vs. NCBI nr
Match: XP_022961869.1 (CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 338.6 bits (867), Expect = 3.8e-89
Identity = 172/204 (84.31%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLKGLENISVAEIIS 60
           MQG+VRA+RSWQETLKIA S HSCRRETNQVEK+ +GS+   SSS LKGLENI+VAEI+S
Sbjct: 1   MQGIVRAIRSWQETLKIANSHHSCRRETNQVEKILEGSESRGSSSPLKGLENITVAEIVS 60

Query: 61  SKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIA 120
             GDGSIGS W SC ADD AID VQNMARNN+GSLVVLKPEGQHIAGIVTE DYLKKIIA
Sbjct: 61  RNGDGSIGSSWFSCSADDAAIDTVQNMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKIIA 120

Query: 121 DGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDV 180
           DGR PIYTKVGEIMT EDKLV+VTSDTNILKAMQLMTENRIRHVPVIDGKLVG+IS+VDV
Sbjct: 121 DGRCPIYTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRIRHVPVIDGKLVGIISVVDV 180

Query: 181 VRAVVEQQNGELKRLNEYIKGEYY 205
           V+AVV+QQNGEL+RLNEYIKGE Y
Sbjct: 181 VKAVVKQQNGELERLNEYIKGESY 204

[Close]

BLAST of CmaCh12G004610 vs. TAIR 10
Match: AT1G47271.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-55
Identity = 109/158 (68.99%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 48  KGLENISVAEIISSKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKP-EGQHIA 107
           KGLEN++VA+++S+K D  I + W+SCR +DT  DAV+NMA++NIGSLVVL+P + Q+IA
Sbjct: 38  KGLENLTVADVLSTK-DTDIDT-WISCRTNDTVSDAVKNMAKHNIGSLVVLEPGDQQYIA 97

Query: 108 GIVTERDYLKKIIADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPV 167
           GIVTERDY+KKII  GRS   TKVGE+MT E KLV+V+S TNI+KAMQLM+EN IRHVPV
Sbjct: 98  GIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVSSGTNIIKAMQLMSENHIRHVPV 157

Query: 168 IDGKLVGMISIVDVVRAVVEQQNGELKRLNEYIKGEYY 205
           IDGK+VG+IS+VDVV+A+V+ QNGELKRLNE+IKG+YY
Sbjct: 158 IDGKIVGLISMVDVVKAIVDHQNGELKRLNEFIKGDYY 193

[Close]

BLAST of CmaCh12G004610 vs. TAIR 10
Match: AT5G10860.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 177.9 bits (450), Expect = 8.0e-45
Identity = 99/207 (47.83%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 1   MQGMVRAVRSWQETLKIAISQHSCRRETNQVEKLFKGSDIGASSSMLK--GLENISVAEI 60
           MQG++R+  S    +K ++ QH           +F         + ++  G E+ +++++
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 61  ISSKGDGSIGSPWLSCRADDTAIDAVQNMARNNIGSLVVLKP-EGQHIAGIVTERDYLKK 120
           + SKG  + GS WL C  DDT  DAV++M ++N+G+LVV+KP E Q +AGI+TERDYL+K
Sbjct: 61  MKSKGKSADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRK 120

Query: 121 IIADGRSPIYTKVGEIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVIDGK-LVGMIS 180
           II  GRS   TKVG+IMT E+KL++VT +T +L+AMQLMT+NRIRH+PVI  K ++GM+S
Sbjct: 121 IIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVS 180

Query: 181 IVDVVRAVVEQQNGELKRLNEYIKGEY 204
           I DVVRAVV +   EL+RLN YI+G Y
Sbjct: 181 IGDVVRAVVHEHREELQRLNAYIQGGY 206

[Close]

BLAST of CmaCh12G004610 vs. TAIR 10
Match: AT2G36500.1 (CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10
Identity = 34/107 (31.78%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 72  LSCRADDTAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVG 131
           L+     T  DA + MA   + + V+L      ++GIVT++D   ++IA+G  P +T V 
Sbjct: 71  LTINEGTTVFDACRRMAARRVDA-VLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVS 130

Query: 132 EIMTSEDKLVSVTSDTNILKAMQLMTENRIRHVPVID-GKLVGMISI 178
           ++MT     + VTSD+  ++A+Q M + + RH+PV++ G+++ ++ I
Sbjct: 131 KVMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDI 174

[Close]

BLAST of CmaCh12G004610 vs. TAIR 10
Match: AT3G52950.1 (CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-09
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 79  TAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTSED 138
           T  DA + MA   + +  +L      ++GIVT++D   ++IA+G  P  T V ++MT   
Sbjct: 80  TVFDACRRMAARRVDA-CLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNP 139

Query: 139 KLVSVTSDTNILKAMQLMTENRIRHVPVID-GKLVGMISI 178
             + VTSD+  L+A+Q M + + RH+PV++ G+++ ++ I
Sbjct: 140 --IFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDI 176

[Close]

BLAST of CmaCh12G004610 vs. TAIR 10
Match: AT3G52950.2 (CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-09
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 79  TAIDAVQNMARNNIGSLVVLKPEGQHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTSED 138
           T  DA + MA   + +  +L      ++GIVT++D   ++IA+G  P  T V ++MT   
Sbjct: 80  TVFDACRRMAARRVDA-CLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNP 139

Query: 139 KLVSVTSDTNILKAMQLMTENRIRHVPVID-GKLVGMISI 178
             + VTSD+  L+A+Q M + + RH+PV++ G+++ ++ I
Sbjct: 140 --IFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDI 176

The following BLAST results are available for this feature:

BLAST of CmaCh12G004610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEV3	1.1e-43	47.83	CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P32987	3.0e-12	36.00	Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens OX=228...	[more]
P50100	8.7e-12	28.21	Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 ...	[more]
Q9SJQ5	4.0e-09	31.78	CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana OX=3702 GN=CBSCB...	[more]
Q9LF97	2.6e-08	33.00	CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana OX=3702 GN=CBSCB...	[more]

BLAST of CmaCh12G004610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTQ7	2.8e-106	100.00	CBS domain-containing protein CBSX3, mitochondrial-like OS=Cucurbita maxima OX=3...	[more]
A0A6J1GJI0	7.7e-104	97.55	CBS domain-containing protein CBSX3, mitochondrial-like OS=Cucurbita moschata OX...	[more]
A0A6J1HF98	1.8e-89	84.31	CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 OS=Cucurbita ...	[more]
A0A6J1HD27	4.5e-88	83.90	CBS domain-containing protein CBSX3, mitochondrial-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1K5H5	1.0e-87	82.84	CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 OS=Cucurbita ...	[more]

BLAST of CmaCh12G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002498.1	5.8e-106	100.00	CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita maxima]	[more]
XP_023538057.1	4.2e-104	97.55	CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
XP_022951679.1	1.6e-103	97.55	CBS domain-containing protein CBSX3, mitochondrial-like [Cucurbita moschata]	[more]
KAG6585586.1	2.5e-101	95.59	CBS domain-containing protein CBSX3, mitochondrial, partial [Cucurbita argyrospe...	[more]
XP_022961869.1	3.8e-89	84.31	CBS domain-containing protein CBSX3, mitochondrial-like isoform X2 [Cucurbita mo...	[more]

BLAST of CmaCh12G004610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47271.1	1.7e-55	68.99	Cystathionine beta-synthase (CBS) family protein	[more]
AT5G10860.1	8.0e-45	47.83	Cystathionine beta-synthase (CBS) family protein	[more]
AT2G36500.1	2.9e-10	31.78	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT3G52950.1	1.9e-09	33.00	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]
AT3G52950.2	1.9e-09	33.00	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	SMART	SM00116	cbs_1	coord: 139..185 e-value: 4.7E-10 score: 49.4 coord: 70..119 e-value: 2.0E-4 score: 30.7
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 72..118 e-value: 1.5E-6 score: 28.6 coord: 130..185 e-value: 6.9E-12 score: 45.6
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 134..192 score: 13.98159
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 67..126 score: 10.799863
None	No IPR available	GENE3D	3.10.580.10		coord: 48..203 e-value: 1.7E-44 score: 153.1
None	No IPR available	PANTHER	PTHR43080:SF12	CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN	coord: 1..203
None	No IPR available	PANTHER	PTHR43080	CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL	coord: 1..203
None	No IPR available	SUPERFAMILY	54631	CBS-domain pair	coord: 69..192
IPR044725	CBS domain-containing protein CBSX3, CBS domain	CDD	cd04623	CBS_pair_bac_euk	coord: 68..182 e-value: 2.52079E-45 score: 144.096

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G004610.1	CmaCh12G004610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane