CmaCh12G004080 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G004080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 2115395 .. 2117552 (-)
RNA-Seq ExpressionCmaCh12G004080
SyntenyCmaCh12G004080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACTTCAATCTTCGGATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAAGTAAGTTGGAAAAGATTGAGGTTGATTCTAGAAAATTAAACGATGAAATTGGTAGAATCTTTCATGAGTTGGAAGTCTTAAGAAATCAAACTGGCGCATCGGTGTTAAGCCGATGCACATCTGGCTAGAAAACCTATGGATTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGGTAAGAATTTCTTGTCTTGTTGCTTCAGCTATTACTCCTAGGCTTTGTTGTTCTCTTTATCTAAGTTTGAAGTTCTGTGTGCATATGATCCATTTATCAACTATAGCTATCCATTTCCAATTTCATTTTTTAGGAATGAGATGCTCATATTGCTCCAGTACAATTGTAATCTATAGAAACATGGGTCCTGAAAGAGAAACCTAGAACAAAGCAGAACTAAAGTTTACTACTAGTACACACGAGATTGAAAGAAAGTAAGAAATGTAATGGTCCAAGCCCCTAGATATTGTCAGGAATTTCCCTCAAGGTTTTAAAACGCGTTTACTAGGAAGAGGTTTGCATATCCTTATAAGGAATGTTTCGTTCTCCTCTTCAATCGATGTGGGATATCACAATCCATCCTCTTGAGGGTCTAGTGTCCTTGTTGGGACATCACCCGATGTTTGACTTTGATACCATTTGTAAGGAATGATTCGTTCCCCTCTTCAAACAAATAGCGAAGAGATTGAGAGATTTTTGCCTAAAAGAATATGCCTTTTTACCTCATGCTTGTGATCTCTCAATAATGTCAAAAATTTGTGAGCAATTAAGATAGACTGACTTAAACTGATATCACAATGAAAGAATACTGTGAATGGACAATCCTTCTAGGCTGGTTAGATGTAGTGATCGACAATCCTTGTGTTTTTGTGTTCTTCTTCCTCCATCTTTACAATGATATGATATTATTCACTTTGAGCATAATCTCTTGTGGCTTCACTTTTGGTTTATTCAAAAGGCCTCATACGAATGGAGATGTATTCCTTATTTATAAATCCATGATCAACCCCTAAATTAATCGATATGGGACTCCTCTCCTAACAATCATTGACATTAACATGTTTCATTTTTTGGTTATCAGGAGGACGGGAGCTTAAAACAGAAGAAAGACGTCGAAAGTGAATCAAAGACCCCTTTCAAATCTCTCAAATTAAGGAGCAGTATGCATGTGTAAGTTAGTACTCTCACAACATATTTGTGGAATTATTGAGAAGGTAGCAATTAAGAGGAACATACTGCAGGGAACAACGCAAAGCCAAAGCATCACGGCCTAATAATAATACGGTATCCATATTGATGGAAACCATTTAGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCTGCCGCACCCCAAGGTGAGGCAGCGGCGCCTTCTGCGACGTAAACCGGCTCAAGCTTTGTTCTCGGAGTGATGATTACAAGACGACCATATCTAACAATCGAGTTTCCAACAAACACAAACACTAGAGGTAATAACAAGAAAAAGATCTTGAAATTGACCCTTGTTCTTTTCACCTGGGATCTGTAGCTTGAATATGATGACACAGATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTGTTTGAGCTTGGGGAATTCAGAAGAATAGTGGTCGTATATATATAGAAAGAGAGAGAGCGATGAAGATTGTTTGTTAATTTGCTTTGGCATAAATTCTGTGGGGCCAATTGGTTCTTTCTCCATTTCACCTTTGTTTCTGATTCGACTTCACCGAATTGGCATCAGTGCCTGTTCGTAGTTTTCAATCATTTATCCTCTTATTTTTTTCCATCTGGAAAGTCCTTTATAATTTTTTTTGAGGGGGTTTCTGTAAGAGAATATGTTCTTAATTTTTGCATTTAAATCAACTTCTGCATTTGAGCAATCTTACTAGTGAACTCTGTAACGACTCAGGGTGCATTTGAGCAATCATACCC

mRNA sequence

ATGGAAGAACTTCAATCTTCGGATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAATCTTAAGAAATCAAACTGGCGCATCGGTGTTAAGCCGATGCACATCTGGCTAGAAAACCTATGGATTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGCAATTAAGAGGAACATACTGCAGGGAACAACGCAAAGCCAAAGCATCACGGCCTAATAATAATACGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCTGCCGCACCCCAAGGTGAGGCAGCGGCGCCTTCTGCGACATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTGTTTGAGCTTGGGGAATTCAGAAGAATAGTGGTCGTATATATATAGAAAGAGAGAGAGCGATGAAGATTGTTTGTTAATTTGCTTTGGCATAAATTCTGTGGGGCCAATTGGTTCTTTCTCCATTTCACCTTTGTTTCTGATTCGACTTCACCGAATTGGCATCAGTGCCTGTTCGTAGTTTTCAATCATTTATCCTCTTATTTTTTTCCATCTGGAAAGTCCTTTATAATTTTTTTTGAGGGGGTTTCTGTAAGAGAATATGTTCTTAATTTTTGCATTTAAATCAACTTCTGCATTTGAGCAATCTTACTAGTGAACTCTGTAACGACTCAGGGTGCATTTGAGCAATCATACCC

Coding sequence (CDS)

ATGGAAGAACTTCAATCTTCGGATAATGAAAAGGATTGCACAAAAAGCAGGCTTAGAAATCTTAAGAAATCAAACTGGCGCATCGGTGTTAAGCCGATGCACATCTGGCTAGAAAACCTATGGATTAGGAGTGAAGGAAAAAGAAAAGCATCTTCTGCACAAGCACCTCGTGGCAATGGAGATTCTGGAAAGCAATTAAGAGGAACATACTGCAGGGAACAACGCAAAGCCAAAGCATCACGGCCTAATAATAATACGAGTGGAAGTAAGGCTGATAAGATATCAAAACCAACAACACCACCAGCAACGCTGCCGCACCCCAAGGTGAGGCAGCGGCGCCTTCTGCGACATAGCAAAATGACCAAGATTCCAAGAACAGCAAGCAGAGGCCTTGGCGGAGGAGCTATGGAGGCCAAGGCCTGCTCTGCCCATCCTTGTTTCCATGATGGGCCTCTCCTCTCTCTTATCAACCAACCCATTGTTCTTCTCTCTGTGTTTGAGCTTGGGGAATTCAGAAGAATAGTGGTCGTATATATATAG

Protein sequence

MEELQSSDNEKDCTKSRLRNLKKSNWRIGVKPMHIWLENLWIRSEGKRKASSAQAPRGNGDSGKQLRGTYCREQRKAKASRPNNNTSGSKADKISKPTTPPATLPHPKVRQRRLLRHSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSVFELGEFRRIVVVYI
Homology
[Close]
BLAST of CmaCh12G004080 vs. NCBI nr
Match: KAG7020454.1 (hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 9.0e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 116 RHSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 166
           R SKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV
Sbjct: 19  RDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 68

[Close]
BLAST of CmaCh12G004080 vs. NCBI nr
Match: KAG6585541.1 (hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 9.0e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 116 RHSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 166
           R SKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV
Sbjct: 19  RDSKMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPIVLLSV 68

[Close]
BLAST of CmaCh12G004080 vs. NCBI nr
Match: KAG6585542.1 (hypothetical protein SDJN03_18275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 9.6e-12
Identity = 46/76 (60.53%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 33 MHIWLENLWIRSEGKRKASSAQAPRGNGDSGKQ----------------------LRGTY 87
          MHIWLENLW+RSEGKRKASSAQAPRGNGDSGK+                      LR + 
Sbjct: 1  MHIWLENLWLRSEGKRKASSAQAPRGNGDSGKEDGSLKQKKDVESESKTPFKSHKLRSSM 60

[Close]
BLAST of CmaCh12G004080 vs. NCBI nr
Match: XP_038884859.1 (uncharacterized protein LOC120075491 [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-11
Identity = 65/162 (40.12%), Postives = 84/162 (51.85%), Query Frame = 0 

Query: 1   MEELQSSDNEKDCTKSRLRNLKKSNWRIGVKPMHIWLENLWIRSEGKRKASSAQ-APRGN 60
           ME LQS ++EKDCT   L + K     I  + ++  +  +    E  RK + A   P  N
Sbjct: 221 MERLQSLNDEKDCTIGALES-KLEKMGIDSRKLNDEISRISHELEVLRKHNGASVTPMLN 280

Query: 61  G-DSGKQLRGTYCREQRKAKASRPNNNTSGSKADKISKPTTPPATLPHPKVRQRRLLRHS 120
              SG ++ G   +E+ K          SG+      K ++    L + +  +R      
Sbjct: 281 RCTSGYRIFGFGVKEKEKG---------SGNNIIVRKKASSETRKLEYDETDRR------ 340

Query: 121 KMTKIPRTASRGLGGGAMEAKACSAHPCFHDGPLLSLINQPI 161
            M KIP  ASRGLGGG MEAKACSAHPCFH GPLLSLINQPI
Sbjct: 341 -MAKIPSMASRGLGGGVMEAKACSAHPCFHAGPLLSLINQPI 365

The following BLAST results are available for this feature:
BLAST of CmaCh12G004080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G004080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G004080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020454.19.0e-1898.00hypothetical protein SDJN02_17138, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585541.19.0e-1898.00hypothetical protein SDJN03_18274, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585542.19.6e-1260.53hypothetical protein SDJN03_18275, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038884859.13.6e-1140.12uncharacterized protein LOC120075491 [Benincasa hispida][more]
BLAST of CmaCh12G004080 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G004080.1CmaCh12G004080.1mRNA