CmaCh12G003740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G003740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 1932561 .. 1935913 (-)
RNA-Seq ExpressionCmaCh12G003740
SyntenyCmaCh12G003740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATTCAAAGGGAAAGGATATTTAAGCGCTCTGCGCGCAAGTTCGACGGAGGTAAGTTTGTAAAATCCTCGATTTCGGTTTTATATTGTTCATTCCTTCGGACTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTATTAATTCCCTGACTCCGATCTCTTCGATCTTGAAATTGTGTTCAAACTCAAGTCTCGTGTTTTCTCACTTCCTTGCAATATTTGTAGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTGTATGATTCGTTCCTGAAAGAAACTTAAGGGAAACCCTAATTTGTTAATTGTTGTGTGACTGATGTTGTGGAGGCGGCCAAAAAGAGCCACATAACAATGTTTCTCTGTAAGTATCTGTCGGTGTGTACTCTCAGAATCTTTGTTTGGTATCATAAGAATGTGGAAATGTTTTTTACAAATCAATTTTGATTTGATTTGTATGGTTATTCAATTATTGAAATTTGAAGGATCTTGTTTGGTTTTCGTTTTGAAAAGCTGATTTATACGAATTATATGAACAAACATGGCTTTTATAGGACTTATCCAAACTCATTTAGTTAATGTAGGTCTTAAGTTGACGATTGAAAGCATGTTTCCATTATGATAGGTGAAGAATCACCAGGTCAAGAAGTGAGTGAAAGCATTTTATTCTGAAATCCATTGTTGAATACACTTTATTCTGAAATGTATTGTTGAAGAGTCTGTTTTACGAGATTTAAAATCTACAATTTTTCTATTGAATTTCTTTAAGAAAAAGAAAAAAACATTTGGGAACAAATATCTTGCTCAATTTCTCACTAAGAGTAGCTTCCTTGTGCCACGGAGAATGAGTTGCAGCAGCTTCTTGTGGACTAAGAGATCCATTAACTTGTCTCCTACCACAGTTCGTTAATAGTGACAAACTTTTGTAGCTAGTCAAATTTTACCTGAATTAGTGCTACTTTTTCCTAACCAAGCTTAGCTCAACTCAATTGACATGAAGTAGGAGTCATCAACCAAAGAAATCAGAGGTTCGAATTCTTTGCCCCAGTTATTGTTGAACTCAAAACAAGTGGTTAACTACTTTTGTATAGTCGGCAGAGTCTATCTGAGTTCTATTAGTCAAGAGTTCTCAATGTAAATTTCAGATCAACAGATCAATATGCTGTTTTGTTAGATTTTGAGTTGTTCTGGATCAAGATCACTTACGGTGTCAATCAAATGAGTCTTTTGTGACATTATTTAACAAATATTAGTTTAAGTAGTGGTGCACTGAATGAATGAAATTATGTTTTCAGCAAAAAATCTAGTAATGAAGAAAGTGATTATTCAAGATACTCTATGAAAGAGGTAGATTTGGAGTTCCTTCTTAATACTAAATATAAATAGAAAGTTCTTACAAAATAATCTCATTTGCATGAAGCCTAAAAAATTTGCTATGGTTAATTTTCAGACCAACACCAATTGAGGCTTGATGGAATAGTAATTTGAATTTGATTTATTATAGGTTTGATATTTCCTTAAGATATATGAGTCTTAGATTTACATATGTAGTATCCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATAATTAGATTTACATATGTAGTATCCCAGGTAAAAACGTCAGCGTTATTATCTTTGATATATCTGTTAAGTGAATATAATTATGAGTCTTAGATTTACATATGTAGTATCCCAGGTAAAAACGATAGTGTTATTATTTTTGATATATCTGTTAAGTGAATATTAGAGCTTTATATTCACGAGTATAATTGATAGATCTTGTCCTCCATACCTTTCGGCCCAAATTATTGTTGGGATTCAAACCATCTTGGATTGACTTAGTGGTCAATAAGAGTCGTGTAATTAATAAAGAGCATAGAGAAAATGAGTTTAAGTCAAGGTGATCACGAACTTAAAATAATATTTATTATCTTAGGATCAAATGGTTGTAACAGGGGCGTGTGCAAGCCGATCCAAACACTCATGGATGTTATAAATATGTGTGTACGTCTATATATGTATATGTGCAATTTTGTTTTTGGAGGAAGGCATTTACACACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTACTCATCTTGGCTGTCATGATTCCCATTTTGTCATCTTCTTTTCGCTTTGGTAGGGTTTTGGTTTTGGATATGTTATTGTTTTCCAGCTCTTTTTCTCTTGATAATGAATGAGCCATCTCAAACAAACTCATCAAATGCTTAAACATATATTTGTAGTGATTAGTTAGTAAATCTTCTTTTTTGTTGTTATTTAATCATCAAATTGATTTAGTTCATGTCCAGCAATGAATTCAATGACATAATCATCATGGAAAATATGTAATTTGCTTCCTGTCCTCTTGTTTTCTGTTGAATAGCAAAAGAATATCATCCCTTCAGCTAGCTGCTGTCTTTTGTTCTCTTGTTGTAAATGAGACTCTCTGTATGGTAGCAAAAAGCATATTGCTTTCTCCATTATATATAAAGTTCATCTCTAACTGCTAGAAGAACTGTATTTACATATGACGTTATTTAACATTTTGTGCTAATTTTCTCACTTTTTATTTGCATCAGTAGAAGCAATATGTGTTAAGAAATTCGCTCTATCGAATTGTGGATTAGGTTCTTTCTTTCAAAGGGATTCTAGCAGTCTGTTCAAGCAAAATCTAATATAGCTCTACTTTTTGCAATGCTGTGGCATAATTGTGTTTGTCCAAGCTATCTGTATAATCACTTACTCATTTCGCAATTTTCTGTTGTAATCCTGCTTTTCCAGATAAGGCAGATCCCAGGACTTATGACCTCAATAGATGTTTTTTTCACCATTGGCATTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCAGAAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCTTGTGTTTTCTTTACTCGTTTGATTTTACCAATCTAATTCTGAGAAAATGGGAGGATTTCACCCGGGGCTGGTTGCTTCCTCGTAGTATCAACTCTAAAGATAGATTGATATTAGTTTCATCACATATTTATATCAATGTGTAATCAGTTCGACTCGGCCGGGTTCGGAGGTTTAATCGTAAGCAAAACCGATTGA

mRNA sequence

AAATATTCAAAGGGAAAGGATATTTAAGCGCTCTGCGCGCAAGTTCGACGGAGGTAAGTTTGTAAAATCCTCGATTTCGGTTTTATATTGTTCATTCCTTCGGACTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTTTCGACTCGGCCGGGTTCGGAGGTTTAATCGTAAGCAAAACCGATTGA

Coding sequence (CDS)

ATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTTTCGACTCGGCCGGGTTCGGAGGTTTAATCGTAAGCAAAACCGATTGA

Protein sequence

MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSLITFDSAGFGGLIVSKTD
Homology
[Close]
BLAST of CmaCh12G003740 vs. ExPASy TrEMBL
Match: A0A5A7VGM0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001840 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.0e-07
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL 47
          MANEQR S  PW LE +P +I++LIA+H+ ALVS+SKTTS++E +L
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILALVSNSKTTSKEEGTL 46

[Close]
BLAST of CmaCh12G003740 vs. ExPASy TrEMBL
Match: A0A2H5NX53 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL---ITFDS 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L   +TF S
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKS 53

[Close]
BLAST of CmaCh12G003740 vs. ExPASy TrEMBL
Match: A0A2H5NWA0 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL---ITFDS 52
           MANEQ  ++ PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L   +TF S
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKS 152

[Close]
BLAST of CmaCh12G003740 vs. ExPASy TrEMBL
Match: A0A7N2KTP9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.1e-04
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MANEQRSSI-GPWFLEAIPLVIVLLIAAHVFALVSDSKTTS 41
          M NEQ SS   PW L+A+P V+VLLIAAHV ALV   KTTS
Sbjct: 1  MTNEQHSSSPRPWLLDAVPFVVVLLIAAHVLALVHSQKTTS 41

[Close]
BLAST of CmaCh12G003740 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 8.6e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 34
          MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 33

[Close]
BLAST of CmaCh12G003740 vs. NCBI nr
Match: KAA0064871.1 (uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL 47
          MANEQR S  PW LE +P +I++LIA+H+ ALVS+SKTTS++E +L
Sbjct: 1  MANEQRQSSEPWTLETVPFIILILIASHILALVSNSKTTSKEEGTL 46

[Close]
BLAST of CmaCh12G003740 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-05
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALV 34
          MANE+RSS GPW LEA+P ++VLLIAAHVFALV
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALV 33

[Close]
BLAST of CmaCh12G003740 vs. NCBI nr
Match: GAY44405.1 (hypothetical protein CUMW_081930 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL---ITFDS 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L   +TF S
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKS 53

[Close]
BLAST of CmaCh12G003740 vs. NCBI nr
Match: GAY44404.1 (hypothetical protein CUMW_081930 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1   MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVSDSKTTSQDEDSL---ITFDS 52
           MANEQ  ++ PWFL+ +PL++VLLIAAHVFAL+S  +T S  + +L   +TF S
Sbjct: 100 MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALISHRETASAKKSTLKLVLTFKS 152

The following BLAST results are available for this feature:
BLAST of CmaCh12G003740 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G003740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGM06.0e-0760.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2H5NX531.3e-0453.70Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1[more]
A0A2H5NWA01.3e-0453.70Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_081930 PE=4 SV=1[more]
A0A7N2KTP98.1e-0465.85Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
BLAST of CmaCh12G003740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020426.18.6e-08100.00hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0064871.11.2e-0660.87uncharacterized protein E6C27_scaffold82G001840 [Cucumis melo var. makuwa][more]
KAG7029467.15.2e-0578.79hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma][more]
GAY44405.12.6e-0453.70hypothetical protein CUMW_081930 [Citrus unshiu][more]
GAY44404.12.6e-0453.70hypothetical protein CUMW_081930 [Citrus unshiu][more]
BLAST of CmaCh12G003740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G003740.1CmaCh12G003740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane