CmaCh12G003430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G003430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Auxin-responsive protein
Location	Cma_Chr12: 1740163 .. 1740655 (-)
RNA-Seq Expression	CmaCh12G003430
Synteny	CmaCh12G003430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATGTGAGTCTATACGCACTATATTTGAGTCTATACGTACTATATTTCATAAGTCTTATGATATAGCAGAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

mRNA sequence

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

Coding sequence (CDS)

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAA

Protein sequence

MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPIT

Homology

[Close]

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL
Match: A0A5A7VD13 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002350 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.8e-25
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLH+HP +H  P    +H     + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPI 106
            T  C  Q  + DEEK   VGWPPI SWRKK      QPPQT++NR PI
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFHWHTQPPQTIDNRRPI 107

[Close]

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL
Match: A0A1S3BCX7 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.8e-25
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLH+HP +H  P    +H     + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPI 106
            T  C  Q  + DEEK   VGWPPI SWRKK      QPPQT++NR PI
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFHWHTQPPQTIDNRRPI 107

[Close]

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL
Match: A0A6J1HG86 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462707 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRS 60
           MELQLGLSLPLH++          +HPR+ NE P T PLLSWNDKPKD+D    P+ T  
Sbjct: 1   MELQLGLSLPLHNY--------AFEHPRIGNELPQTLPLLSWNDKPKDDDGSPHPEGTHF 60

Query: 61  CTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENR 103
            T Q  ++DEEKN  VGWPPI +WRKK L Q PQPPQTVENR
Sbjct: 61  STIQ--KEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENR 92

[Close]

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL
Match: A0A0A0LPM6 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.1e-24
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLHSHP +H  P           + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCP 105
            T  C  Q  + DEEK   VGWPPI SWRKK  D   QPPQT+ENR P
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFDWHTQPPQTIENRRP 106

[Close]

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL
Match: A0A6J1BRK7 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111004766 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-13
Identity = 48/102 (47.06%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHPLHGAP-TNCIKHPRVTNERPNT--SPLLSWNDKPKDEDDPDRPQE 60
           MELQLGL+LPLH+  L   P       PR TN   +T   PLLSWN  P DED+ + P  
Sbjct: 1   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 60

Query: 61  TRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVL---DQLPQPP 97
           T   T   + +DE+KN  VGWPP+ SWR K       LP PP
Sbjct: 61  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPP 102

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: XP_023537127.1 (uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 98/106 (92.45%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRS 60
           MELQLGLSLPLH HPLHGAPTNCIKHPRVTNE PNTSPLLSWNDKPKDEDDPDRPQ+TRS
Sbjct: 1   MELQLGLSLPLHHHPLHGAPTNCIKHPRVTNELPNTSPLLSWNDKPKDEDDPDRPQQTRS 60

Query: 61  CTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPIT 107
           CTFQI   DEEKNHGVGWPPIGSWRKKVLDQLP PPQTVENR PIT
Sbjct: 61  CTFQI---DEEKNHGVGWPPIGSWRKKVLDQLPHPPQTVENRRPIT 103

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: KAG7020393.1 (hypothetical protein SDJN02_17077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 6.9e-42
Identity = 85/96 (88.54%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRS 60
          MELQLGLSLPLH HPLHGAPTNCIKHP VTNE PN SPLLSWNDKPKDEDDPDRP+ETRS
Sbjct: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRS 60

Query: 61 CTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPP 97
          CTFQI   DEEKNH VGWPPIGSWRKKVLDQL  PP
Sbjct: 61 CTFQI--RDEEKNHRVGWPPIGSWRKKVLDQLTHPP 94

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: KAG6585474.1 (hypothetical protein SDJN03_18207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 84/96 (87.50%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRS 60
          MELQLGLSLPLH HPLHGAPTNCIKHP VTNE PN SPLLSWNDKPKD+DDPDRP+ETRS
Sbjct: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDDDDPDRPRETRS 60

Query: 61 CTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPP 97
          CTFQI   DEEKNH VGWPPIGSWRKKVLDQL  PP
Sbjct: 61 CTFQI--RDEEKNHRVGWPPIGSWRKKVLDQLTHPP 94

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo] >KAA0064917.1 auxin-responsive protein IAA29-like [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLH+HP +H  P    +H     + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPI 106
            T  C  Q  + DEEK   VGWPPI SWRKK      QPPQT++NR PI
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFHWHTQPPQTIDNRRPI 107

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: XP_023546551.1 (auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 64/102 (62.75%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRS 60
           MELQLGLSLPLHS+          +HPR+ NE P T PLLSWNDKPKD+DD      T  
Sbjct: 58  MELQLGLSLPLHSY--------AFEHPRIGNELPRTLPLLSWNDKPKDDDDSPHTGGTHF 117

Query: 61  CTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENR 103
            T Q  +DDEEKN  VGWPPI +WRKK L Q PQPPQTVENR
Sbjct: 118 STIQ--KDDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENR 149

The following BLAST results are available for this feature:

BLAST of CmaCh12G003430 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G003430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD13	4.8e-25	58.72	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3BCX7	4.8e-25	58.72	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1	[more]
A0A6J1HG86	2.4e-24	60.78	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462707 PE=3 SV=1	[more]
A0A0A0LPM6	3.1e-24	60.19	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1	[more]
A0A6J1BRK7	7.2e-13	47.06	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111004766 PE=3 SV=...	[more]

BLAST of CmaCh12G003430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537127.1	1.8e-50	92.45	uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo]	[more]
KAG7020393.1	6.9e-42	88.54	hypothetical protein SDJN02_17077, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6585474.1	1.5e-41	87.50	hypothetical protein SDJN03_18207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008445232.2	1.0e-24	58.72	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo] >KAA0064917.1 auxi...	[more]
XP_023546551.1	2.9e-24	62.75	auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh12G003430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..42
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 31..99
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 31..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G003430.1	CmaCh12G003430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus