CmaCh12G003080 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G003080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionphotosynthetic NDH subunit of subcomplex B 3, chloroplastic
LocationCma_Chr12: 1569889 .. 1573688 (-)
RNA-Seq ExpressionCmaCh12G003080
SyntenyCmaCh12G003080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAATAGCCGCATGACATTATGAATTTACGAAATTACCCCTTAAAATTCGCGGCGGTGAATTAACGAACGAAGGTGGGAAAGAAAAAAAACGGAGGTAAATGATGAATGACTCAGAACTTCCGACTGGTCGAGCTGAAGGAGGAGGATAATGCTATGGCATCCCTGAACGTCACCACAACCTTGCTGTCCCTCCGGCCGCTGGAATTCCCCTCCGGTAGTGCGAATCGTCGGTGCTTCATCGGAAATTTCCCTAATCGGAAATGGACGCTCCCGCTCTCGGTTGCTTCAAATTCTTCGGAGCCATTGATATCGAGTCCGCCTGATAAGCCTGAAATCGAACTGGAATTTCTTGGGGTAACTACGCGTGAAGACTTTGTTATTGGTAATTTGAGTTTAGTTCCGTTGATTTTGTTGGATTGTGACTGTTTGATGTTTGTGGTTCTTTGGTGCAAACAGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACACGGCCAAGGCGATAAGCGGCGAGAAGCTTTTGAGGAATATAATGCTGGATAACAAGATAGAGTTGTACGCCCCCTATGTAAGTTTTACTTTCTGCACGATACGGAGTGTGTGATGAATTGTGACTATTATTGAACCGATTTGTATGTTGCCCCAACACTGCAAAAATTAGCCATCGCAACAAGTATTATGGATCTCAACTTCTAGTAATGCTAGAGTAATGGGAAGGGAAGAACGATATGCAATGATCATGCAGTTTGTCTGCGACGGTATTGGATAACACGATGACTGTTCCTTGAAACCTGCAACTAAATTTTAGCTGCTCTTACTGAATCCCATATTTAGAACAATGCCTTACTCTTTCTGATCATCATGTCTCAGTAGAACCATGGTATAAACTCTGGTCTTTTATTCTCAACAATTTCGATAAAGTTTTCATAGTTTGATCCTGTAAAACATGAAGACTGAAGTGATCACCTTGAAATACATACACACATACACACACACACACACACACACACACACACACACACACATATATGATTAGTTAGATAATACTTTATTAGTCTAAATTCATGTAATTTCATTTCCTTCCTATCTAATATTGATAACTACTGGTTGGACATTGTGCGAATTTTCAATCCGCAAGGTAAGAAAAGTATCAAATAATCAACAAATTGTTAAATTCACCGTAGTTTATCAACTTCCACAATCTCAACGGTGTAATTAGTTGATCATTTACACGTGTGTTTTGTGCATAACGTGTCACTGAAATGCTCCAAATGTTGTTAGGGGAAATTGATGAACTGTGGTGGTGGCGGAAGCTGCGGGACCTGTATTGTCGAGGTAGTTTTGTGGCATTTCCTTGTAGTTAAAGCTCTAGTAATTTTGCTCTGAGACTTGTTTTTTCTGCTACCCAACTGGTGAAGTACATAAAATGACACTGCCTCTAATAAACAGAACAAGAAAAGCAGATCACATGGTGCCAATGTTGTAAATGGTTAGAAATTTGGAGAGCAGAAAGATCACTCCCAGGCTAAAAAACTGGATTTTGTGATGTGGGAAAAGACACGCTAAATAATCTTATTGTACGAAATAACAGGGTGGCACAATCTCGATGAAAATTTCTTGGTGCCGTTTTTTGGTTTCATCATACACTTCATGAAATAGTTAATTTTTTTTCCCGCTTACTGCCATCACATGTCTTGTTGAGCATGATTATAGGCACAGGAAAATCTAAAGCAGAGGACATATTTGTTCGGTTTTTTAGGTTAAGAAATATTTTTTTGTCCATTCATTTTAATTTACTCTCTAAACTTTAATATGTAATGGGTTAGTCTTTATAAGTTCAAATTTGTATAAATTAGTGGGCGATCTTTGATAGATAACAAGTTGGTCTATATACTTTAAAAGCTATAACAATCAAAGATTTTGACAAGATGAAGTATCTATTTTTATCATGCCACCATCTGTTTCTGGTAGTTTATAATCGTATTTGGTTCCTAATCAGTTTATCAATCTATATATGCAAAAAAAAGAATCTCATTATATTTGAACAATATTTTTTGTTATAGAGACTAAATTCTTTCATATTAAAGTTCAATGACTAAATTGTTGCACATTTGAAAGTATATAGACTAAATCGTTACCTACAATAGTTCATAGACTAAATTGATGGAGCCAAACATGTCCTTTAACCTTTTTTTTTTAATCCAAAGAACTGGATTTCTGATGAAGGTCTCTAATCTTCTTGTGCAGATAATTGATGGGAAAGATCTATTGAATGAGAGAACAAATACTGAACTTCGTTATTTGAAGAAGGTAAGCAAGATAATAATTGAGACTTAAATTTCTCCTTCTCAGCCTCTGTGGTTTTTGTATTTGAGCAGATACGGATTCGATATCAATAGTCAATACCCCGCAACCCCTAAGGGTTTTACGGGAACCATGTGTAAAGTTTTTTTTAAAAACCTTTTTGACTCGCCACGGTACTTTCCATGTTATGTTGCCTATTAGCTCTGAATTAGTTCCCAATATAGACTTTTTTTCTCTACATCACTGTTTAAAGGTACAATAAGAAAACATTTTATCCCCGAAACTGCATGATCTAACTACATCACTGTTTCTTTACTGTTCTAAAGTCTACTGCCTACTTGTTGAGCCTTGTTGGGCCAAACAAAATCCTAGTTCACGTAAGCAAGTAGAAACGAATTTTTAGGACAATTCAATTAATTAACTTGAACTTTCTGAAATGGTGCCGAGAGCCTGATTTTTTATCGTGTTTTCTACAAGTGTATCATTCATAATTTGTTAATATTAATTAGTTGTGATAATTCAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTACTTTCAAGAACTCATCATCTTGGTGCCTATTTGCCTCTCTGTTCAGATCTTTAGGACAATCCTTCTATCATTGCATTGAATATATAAGATCCATTATAGCCATAAATTTCCTCAACATGATTAGACTGCCTTGTGCTATAAGGCAAGCTTTCTGGCGCATGACGAGGCCAATTTTAGTATGAAGGGATAAAATTTTAACTTCAATTTTATATATAATTTTCTAATTTTAACCGGTTTAATTTTTTGTTTTTGAAAATTGTGCTTGTTTCTTTACACTTTTACTATGGTTTTCACCTTTTTTTAAGAAAAGTTTGATATGTTTAGTCAAATTTTAGAAGAAGAAATAAGTTTTAATGTGTGTAATTTTCAAAAACCAAAAACTAGAACCTCGTTTGATACTCATGTTATTAGTTTTATACTTTTGAAAACAAATATTTTCTTCCAAGTTTTTCTTCTATAAAAACACCAAGTCAATATTTTTTTTTAAAAAAAATTAAGTTTTTTAAAACCATTTCTTTAAATTTTCAAATTTTGGTATGATTTTGCTAACATTTAAACAGGAAAAATTTAGAAAAATTGTTGAAGTATGAAGAGTTTAGAGATATTTGTGTAATCCCTTTCTCCTTTATAAAAGGGACATAGATAATTTACCCTTGTGACAAAAATGGTATTTATAAACTTAATTGTCAACAACAAAACAAAATAATTATCAAAATTAAAGGGTTAACAAACAAAACTTAGAATAACTTATAGAATCCAAATATTTTGAATCTCATAGCGACAATTACATTTCTCCTCCTTTTTCGCTTTGTCCTTTCTCCATCGTTACTGCACCCGCATTAATTTAGGTGGACCATTGGTTACAGGTTGTGGTCCAAAGGTTGCCACAATGGAAGAAGTGA

mRNA sequence

GAAAAATAGCCGCATGACATTATGAATTTACGAAATTACCCCTTAAAATTCGCGGCGGTGAATTAACGAACGAAGGTGGGAAAGAAAAAAAACGGAGGTAAATGATGAATGACTCAGAACTTCCGACTGGTCGAGCTGAAGGAGGAGGATAATGCTATGGCATCCCTGAACGTCACCACAACCTTGCTGTCCCTCCGGCCGCTGGAATTCCCCTCCGGTAGTGCGAATCGTCGGTGCTTCATCGGAAATTTCCCTAATCGGAAATGGACGCTCCCGCTCTCGGTTGCTTCAAATTCTTCGGAGCCATTGATATCGAGTCCGCCTGATAAGCCTGAAATCGAACTGGAATTTCTTGGGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACACGGCCAAGGCGATAAGCGGCGAGAAGCTTTTGAGGAATATAATGCTGGATAACAAGATAGAGTTGTACGCCCCCTATGGGAAATTGATGAACTGTGGTGGTGGCGGAAGCTGCGGGACCTGTATTGTCGAGATAATTGATGGGAAAGATCTATTGAATGAGAGAACAAATACTGAACTTCGTTATTTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTTGTGGTCCAAAGGTTGCCACAATGGAAGAAGTGA

Coding sequence (CDS)

ATGACTCAGAACTTCCGACTGGTCGAGCTGAAGGAGGAGGATAATGCTATGGCATCCCTGAACGTCACCACAACCTTGCTGTCCCTCCGGCCGCTGGAATTCCCCTCCGGTAGTGCGAATCGTCGGTGCTTCATCGGAAATTTCCCTAATCGGAAATGGACGCTCCCGCTCTCGGTTGCTTCAAATTCTTCGGAGCCATTGATATCGAGTCCGCCTGATAAGCCTGAAATCGAACTGGAATTTCTTGGGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACACGGCCAAGGCGATAAGCGGCGAGAAGCTTTTGAGGAATATAATGCTGGATAACAAGATAGAGTTGTACGCCCCCTATGGGAAATTGATGAACTGTGGTGGTGGCGGAAGCTGCGGGACCTGTATTGTCGAGATAATTGATGGGAAAGATCTATTGAATGAGAGAACAAATACTGAACTTCGTTATTTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTTGTGGTCCAAAGGTTGCCACAATGGAAGAAGTGA

Protein sequence

MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK
Homology
[Close]
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.5e-31
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 0 

Query: 47  NFPNRKWTLPLSVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLL 106
           N    K    +S A  S  P    P + P ++  F+      DG+  V   +A  G+K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 107 RNIMLDNKIELYAPYGK-LMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW 166
           R+IMLD+ IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 167 RLACQTIVGNKENSGKVVVQRLPQWK 192
           RLACQT VGN +++G VV+Q+LP+WK
Sbjct: 160 RLACQTNVGNPDSTGLVVIQQLPEWK 184

[Close]
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match: A3MYM7 (Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0 

Query: 127 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 174
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVKSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match: Q7VNU4 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0 

Query: 127 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 174
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVNSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match: Q4QP19 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.8e-04
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0 

Query: 127 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ-TIVGNKE 178
           CGGGGSCG CIV++ +G     E   TEL ++ K+   E +RLACQ  + GN E
Sbjct: 73  CGGGGSCGQCIVKVKNGG---GEILPTELSHINKREAKEGYRLACQVNVKGNME 123

[Close]
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match: A5UAX6 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=nqrF PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.8e-04
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0 

Query: 127 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ-TIVGNKE 178
           CGGGGSCG CIV++ +G     E   TEL ++ K+   E +RLACQ  + GN E
Sbjct: 73  CGGGGSCGQCIVKVKNGG---GEILPTELSHINKREAKEGYRLACQVNVKGNME 123

[Close]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match: A0A6J1KTR7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496328 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.0e-106
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match: A0A6J1GHD4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454210 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.0e-102
Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRP+EFPSGSANRRCFIGNF NRK TLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPVEFPSGSANRRCFIGNFRNRKPTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPP+KPEIELEFLGPKPGSDGSFPV+TAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPEKPEIELEFLGPKPGSDGSFPVNTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match: A0A6J1BTF3 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004660 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.5e-85
Identity = 156/176 (88.64%), Postives = 164/176 (93.18%), Query Frame = 0 

Query: 17  MASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPE 76
           MASLNVTT  LSLR  EF SGS NRRC IGNFPNR+ T+PLSVA+NSSEPL+SSP +KPE
Sbjct: 1   MASLNVTTASLSLRQPEFRSGSGNRRCIIGNFPNRRPTVPLSVAANSSEPLLSSPAEKPE 60

Query: 77  IELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136
           IELEFLGP PGSDGS+PVDTAKA+SGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFLGPNPGSDGSYPVDTAKAVSGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK 193
           IVEIIDG  LLNERTNTELRYLKKKPE+WRLACQTIVGNKENSGKVVVQRLPQWKK
Sbjct: 121 IVEIIDGNGLLNERTNTELRYLKKKPETWRLACQTIVGNKENSGKVVVQRLPQWKK 176

[Close]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match: A0A0A0LQ15 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379280 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.7e-84
Identity = 154/176 (87.50%), Postives = 165/176 (93.75%), Query Frame = 0 

Query: 17  MASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPE 76
           M+SLNVTT  LSLR  EF S +ANRRC IGNFP+RK T PLSVA+NSSEPL+S+P +KPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDNANRRCLIGNFPSRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 77  IELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136
           IELEF+GPKPGSDGSFPVDT KAISG+KLLRNIMLDNK+ELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKLELYAPYGKLMNCGGGGSCGTC 120

Query: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK 193
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWKK 176

[Close]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match: A0A1S3BBH4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488260 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.2e-78
Identity = 145/166 (87.35%), Postives = 153/166 (92.17%), Query Frame = 0 

Query: 17  MASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPE 76
           M+SLNVTT  LSLR  EF S   NRRC IGNFPNRK T PLSVA+NSSEPL+S+P +KPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDKVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 77  IELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136
           IELEF+GPKPGSDGSFPVDT KAISG+KLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 183
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 166

[Close]
BLAST of CmaCh12G003080 vs. NCBI nr
Match: XP_023002507.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >XP_023002508.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >XP_023002509.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >XP_023002510.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 4.2e-106
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. NCBI nr
Match: XP_023536929.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023536930.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023536932.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102
Identity = 187/192 (97.40%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLL LRP+EFPSGSANRRCFIGNFPNRK TLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLPLRPVEFPSGSANRRCFIGNFPNRKPTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPP+KPEIELEFLGPKPGSDGS PVDTAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPEKPEIELEFLGPKPGSDGSLPVDTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. NCBI nr
Match: XP_022951361.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata] >XP_022951362.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata] >XP_022951363.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 6.3e-102
Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRP+EFPSGSANRRCFIGNF NRK TLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPVEFPSGSANRRCFIGNFRNRKPTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPP+KPEIELEFLGPKPGSDGSFPV+TAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPEKPEIELEFLGPKPGSDGSFPVNTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. NCBI nr
Match: XP_023538465.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538466.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538467.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538468.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 186/192 (96.88%), Postives = 188/192 (97.92%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRP+EFPSGSAN R FIGNFPNRK TLPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPVEFPSGSANPRRFIGNFPNRKPTLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPP+KPEIELEFLGPKPGSDGS PVDTAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPEKPEIELEFLGPKPGSDGSLPVDTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQRLPQWKK 193
           KVVVQRLPQWKK
Sbjct: 181 KVVVQRLPQWKK 192

[Close]
BLAST of CmaCh12G003080 vs. NCBI nr
Match: KAG6585438.1 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0 

Query: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVA 60
           MTQNFRLVELKEEDNAMASLNVTTTLLSLRP+EFPSGSANRRCFIGNF NRK  LPLSVA
Sbjct: 1   MTQNFRLVELKEEDNAMASLNVTTTLLSLRPVEFPSGSANRRCFIGNFRNRKPMLPLSVA 60

Query: 61  SNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAP 120
           SNSSEPLISSPP+KPEIELEFLGPKPGSDGS PVDTAKAISGEKLLRNIMLDNKIELYAP
Sbjct: 61  SNSSEPLISSPPEKPEIELEFLGPKPGSDGSLPVDTAKAISGEKLLRNIMLDNKIELYAP 120

Query: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180
           YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG
Sbjct: 121 YGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 180

Query: 181 KVVVQ 186
           KVVVQ
Sbjct: 181 KVVVQ 185

[Close]
BLAST of CmaCh12G003080 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.1e-59
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0 

Query: 58  SVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIEL 117
           S +S +S P   S     EIELEF GPKPGSDGS+PVD AKA+SG+KLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 118 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 177
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 178 NSGKVVVQRLPQWKK 193
           NSGKVVVQR+PQWKK
Sbjct: 159 NSGKVVVQRIPQWKK 173

[Close]
BLAST of CmaCh12G003080 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 98/124 (79.03%), Postives = 108/124 (87.10%), Query Frame = 0 

Query: 58  SVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIEL 117
           S +S +S P   S     EIELEF GPKPGSDGS+PVD AKA+SG+KLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 118 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 177
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 178 NSGK 182
           NSGK
Sbjct: 159 NSGK 162

[Close]
BLAST of CmaCh12G003080 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-39
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 0 

Query: 58  SVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIEL 117
           S +S +S P   S     EIELEF GPKPGSDGS+PVD AKA+SG+KLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 118 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 161
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKK
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]
BLAST of CmaCh12G003080 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-32
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 0 

Query: 47  NFPNRKWTLPLSVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLL 106
           N    K    +S A  S  P    P + P ++  F+      DG+  V   +A  G+K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 107 RNIMLDNKIELYAPYGK-LMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW 166
           R+IMLD+ IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 167 RLACQTIVGNKENSGKVVVQRLPQWK 192
           RLACQT VGN +++G VV+Q+LP+WK
Sbjct: 160 RLACQTNVGNPDSTGLVVIQQLPEWK 184

[Close]
BLAST of CmaCh12G003080 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 58  SVASNSSEPLISSPPDKPEIELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIEL 117
           S +S +S P   S     EIELEF GPKPGSDGS+PVD AKA+SG+KLLR+IM DNKIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 118 YAPYGKLMNCGGGGSCGTCIVE 140
           YA YGK+MNCGGGGSCGTCIVE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:
BLAST of CmaCh12G003080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LU213.5e-3147.26Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali... [more]
A3MYM73.7e-0451.02Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropne... [more]
Q7VNU43.7e-0451.02Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (str... [more]
Q4QP194.8e-0448.15Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (... [more]
A5UAX64.8e-0448.15Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus influenzae (... [more]
BLAST of CmaCh12G003080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KTR72.0e-106100.00photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ... [more]
A0A6J1GHD43.0e-10297.40photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschat... [more]
A0A6J1BTF37.5e-8588.64photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant... [more]
A0A0A0LQ153.7e-8487.502Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C... [more]
A0A1S3BBH45.2e-7887.35photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3... [more]
BLAST of CmaCh12G003080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023002507.14.2e-106100.00photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >... [more]
XP_023536929.12.8e-10297.40photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo... [more]
XP_022951361.16.3e-10297.40photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]... [more]
XP_023538465.11.2e-10096.88photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo... [more]
KAG6585438.12.3e-9696.76Photosynthetic NDH subunit of subcomplex B 3, chloroplastic, partial [Cucurbita ... [more]
BLAST of CmaCh12G003080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32590.14.1e-5980.002Fe-2S ferredoxin-like superfamily protein [more]
AT4G32590.31.3e-5279.032Fe-2S ferredoxin-like superfamily protein [more]
AT4G32590.43.6e-3974.762Fe-2S ferredoxin-like superfamily protein [more]
AT3G16250.12.5e-3247.26NDH-dependent cyclic electron flow 1 [more]
AT4G32590.21.3e-2873.172Fe-2S ferredoxin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domain superfamilyGENE3D3.10.20.30coord: 94..192
e-value: 1.7E-17
score: 65.2
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPFAMPF00111Fer2coord: 124..173
e-value: 1.5E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR23426FERREDOXIN/ADRENODOXINcoord: 63..191
NoneNo IPR availablePANTHERPTHR23426:SF27PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTICcoord: 63..191
IPR0360102Fe-2S ferredoxin-like superfamilySUPERFAMILY542922Fe-2S ferredoxin-likecoord: 104..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G003080.1CmaCh12G003080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051536 iron-sulfur cluster binding