CmaCh12G002970 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCGTATTTTCTCCTTCCACTCTGTTCATCTTTCTTTCTCTCTCTGTTAGGGCCATCACTATCCCTTTATCCAACGTTTTCCGACAGCGAAGTCTTCGCCGGCGAGCGCTAGAAGAAGGCCTCCCGACGCTTCCACTTCCGTACGATTCTTTATCTTCGCCTTCATGGAGGTTCTCATCGGTCCTCCCTCTTTCACCATCCAGGTTGCCTCTTCTTCGTCTTTTGTCAGAGATCGGACCGCTGCTTCTCCGCCTCCGCCGCCGCTGGAACATGCTCTTGATTCGCCTTGGAACTGTTTCAATTCTTTCCGAACTTACGCTGTCCGTAAAGCTCCGGAGGATGAAATCGATTACCGTTCTGATTCCTCTTCCTCGATCGGAGTTCCTGATGGTGATGAGAGCGAGGATGAGAGCATTTCGTCCACTGGTGGAGATCATGAGGAGGAGGTTCGGAGTAAACTGGATTCAGGATTCGCGTCTCTCGGATCGTTGGAAGAGTCTCTTCCGATTAAGTGAGTCCGAATTTAGTTTTACCGTTTCTTTTCGTTTTCTTCCTTTGTTGTTTGATCGATTAATTGATTGAGAAAACTTCAATCACTCGATTCGATTAAAATGCTAAAAGACGTTTTCCTCTTCAATCTGCTGGTCTCAATTTGAGTTTCATTGCATTTTTAAAGCAGGAGAGGCTTATCGAGTCACTTTTCTGGAAAATTGAAATCGTTTGCGAATCTAGCAGAGGCGAAATCAGTAAAAGACATTGTGAAACCTGAAAACTCTTTCAATAAGAGAAGAAGAATTTTGATTGCGTCAAAATTGGCTAAGAAATCGTCGTTCTACACCTGGCCGAACCCTAAGTCGATGCCTCTGTTAGCGCTCAGAGAAGTAGATGATGATGATGGCGACGAAGAAGAAAAAAAATCACCTGCTTCATATTCTTCGGAAGATAATGAAGTTGAAGATGAAGAACCGAAAATAAAAATAGTTTCAGATTTTCATCGAAGACGGTTTATGAGCTTTAAGTCGAGATGCTTTTCTCTGGCGGATCTGCAACAGCGGCACCATGATCAACCACAAGAACATTAATCCGTAGCCTTAGCTTTTTTCTTCTTCTTCTTTTTTTTTTTTTGGTTATTTGTTTTTTTTTTTCTTCCTTAATTTTATTTTCTCCTATTATCTATTGTAATTTGCACACACCTATCCAATATAAA ATGGATCGTATTTTCTCCTTCCACTCTGGCCATCACTATCCCTTTATCCAACGTTTTCCGACAGCGAAGTCTTCGCCGGCGAGCGCTAGAAGAAGGCCTCCCGACGCTTCCACTTCCGTACGATTCTTTATCTTCGCCTTCATGGAGGTTCTCATCGGTCCTCCCTCTTTCACCATCCAGGTTGCCTCTTCTTCGTCTTTTGTCAGAGATCGGACCGCTGCTTCTCCGCCTCCGCCGCCGCTGGAACATGCTCTTGATTCGCCTTGGAACTGTTTCAATTCTTTCCGAACTTACGCTGTCCGTAAAGCTCCGGAGGATGAAATCGATTACCGTTCTGATTCCTCTTCCTCGATCGGAGTTCCTGATGGTGATGAGAGCGAGGATGAGAGCATTTCGTCCACTGGTGGAGATCATGAGGAGGAGGTTCGGAGTAAACTGGATTCAGGATTCGCGTCTCTCGGATCGTTGGAAGAGTCTCTTCCGATTAAGAGAGGCTTATCGAGTCACTTTTCTGGAAAATTGAAATCGTTTGCGAATCTAGCAGAGGCGAAATCAGTAAAAGACATTGTGAAACCTGAAAACTCTTTCAATAAGAGAAGAAGAATTTTGATTGCGTCAAAATTGGCTAAGAAATCGTCGTTCTACACCTGGCCGAACCCTAAGTCGATGCCTCTGTTAGCGCTCAGAGAAGTAGATGATGATGATGGCGACGAAGAAGAAAAAAAATCACCTGCTTCATATTCTTCGGAAGATAATGAAGTTGAAGATGAAGAACCGAAAATAAAAATAGTTTCAGATTTTCATCGAAGACGGTTTATGAGCTTTAAGTCGAGATGCTTTTCTCTGGCGGATCTGCAACAGCGGCACCATGATCAACCACAAGAACATTAATCCGTAGCCTTAGCTTTTTTCTTCTTCTTCTTTTTTTTTTTTTGGTTATTTGTTTTTTTTTTTCTTCCTTAATTTTATTTTCTCCTATTATCTATTGTAATTTGCACACACCTATCCAATATAAA ATGGATCGTATTTTCTCCTTCCACTCTGGCCATCACTATCCCTTTATCCAACGTTTTCCGACAGCGAAGTCTTCGCCGGCGAGCGCTAGAAGAAGGCCTCCCGACGCTTCCACTTCCGTACGATTCTTTATCTTCGCCTTCATGGAGGTTCTCATCGGTCCTCCCTCTTTCACCATCCAGGTTGCCTCTTCTTCGTCTTTTGTCAGAGATCGGACCGCTGCTTCTCCGCCTCCGCCGCCGCTGGAACATGCTCTTGATTCGCCTTGGAACTGTTTCAATTCTTTCCGAACTTACGCTGTCCGTAAAGCTCCGGAGGATGAAATCGATTACCGTTCTGATTCCTCTTCCTCGATCGGAGTTCCTGATGGTGATGAGAGCGAGGATGAGAGCATTTCGTCCACTGGTGGAGATCATGAGGAGGAGGTTCGGAGTAAACTGGATTCAGGATTCGCGTCTCTCGGATCGTTGGAAGAGTCTCTTCCGATTAAGAGAGGCTTATCGAGTCACTTTTCTGGAAAATTGAAATCGTTTGCGAATCTAGCAGAGGCGAAATCAGTAAAAGACATTGTGAAACCTGAAAACTCTTTCAATAAGAGAAGAAGAATTTTGATTGCGTCAAAATTGGCTAAGAAATCGTCGTTCTACACCTGGCCGAACCCTAAGTCGATGCCTCTGTTAGCGCTCAGAGAAGTAGATGATGATGATGGCGACGAAGAAGAAAAAAAATCACCTGCTTCATATTCTTCGGAAGATAATGAAGTTGAAGATGAAGAACCGAAAATAAAAATAGTTTCAGATTTTCATCGAAGACGGTTTATGAGCTTTAAGTCGAGATGCTTTTCTCTGGCGGATCTGCAACAGCGGCACCATGATCAACCACAAGAACATTAA MDRIFSFHSGHHYPFIQRFPTAKSSPASARRRPPDASTSVRFFIFAFMEVLIGPPSFTIQVASSSSFVRDRTAASPPPPPLEHALDSPWNCFNSFRTYAVRKAPEDEIDYRSDSSSSIGVPDGDESEDESISSTGGDHEEEVRSKLDSGFASLGSLEESLPIKRGLSSHFSGKLKSFANLAEAKSVKDIVKPENSFNKRRRILIASKLAKKSSFYTWPNPKSMPLLALREVDDDDGDEEEKKSPASYSSEDNEVEDEEPKIKIVSDFHRRRFMSFKSRCFSLADLQQRHHDQPQEH Homology
BLAST of CmaCh12G002970 vs. ExPASy TrEMBL
Match: A0A6J1KP27 (uncharacterized protein LOC111496305 OS=Cucurbita maxima OX=3661 GN=LOC111496305 PE=4 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 5.7e-132 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of CmaCh12G002970 vs. ExPASy TrEMBL
Match: A0A6J1GJ08 (uncharacterized protein LOC111454311 OS=Cucurbita moschata OX=3662 GN=LOC111454311 PE=4 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 4.4e-124 Identity = 241/252 (95.63%), Postives = 242/252 (96.03%), Query Frame = 0
BLAST of CmaCh12G002970 vs. ExPASy TrEMBL
Match: A0A6J1HC13 (uncharacterized protein LOC111462633 OS=Cucurbita moschata OX=3662 GN=LOC111462633 PE=4 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87 Identity = 198/291 (68.04%), Postives = 217/291 (74.57%), Query Frame = 0
BLAST of CmaCh12G002970 vs. ExPASy TrEMBL
Match: A0A6J1K7A7 (uncharacterized protein LOC111492307 OS=Cucurbita maxima OX=3661 GN=LOC111492307 PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 2.0e-84 Identity = 184/246 (74.80%), Postives = 202/246 (82.11%), Query Frame = 0
BLAST of CmaCh12G002970 vs. ExPASy TrEMBL
Match: A0A6J1BUU2 (uncharacterized protein LOC111004943 OS=Momordica charantia OX=3673 GN=LOC111004943 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 1.6e-81 Identity = 182/248 (73.39%), Postives = 200/248 (80.65%), Query Frame = 0
BLAST of CmaCh12G002970 vs. NCBI nr
Match: XP_023002480.1 (uncharacterized protein LOC111496305 [Cucurbita maxima]) HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of CmaCh12G002970 vs. NCBI nr
Match: XP_022951519.1 (uncharacterized protein LOC111454311 [Cucurbita moschata]) HSP 1 Score: 454.1 bits (1167), Expect = 9.0e-124 Identity = 241/252 (95.63%), Postives = 242/252 (96.03%), Query Frame = 0
BLAST of CmaCh12G002970 vs. NCBI nr
Match: KAG6585427.1 (hypothetical protein SDJN03_18160, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 453.8 bits (1166), Expect = 1.2e-123 Identity = 241/251 (96.02%), Postives = 242/251 (96.41%), Query Frame = 0
BLAST of CmaCh12G002970 vs. NCBI nr
Match: KAG7020348.1 (hypothetical protein SDJN02_17032 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 453.4 bits (1165), Expect = 1.5e-123 Identity = 241/252 (95.63%), Postives = 242/252 (96.03%), Query Frame = 0
BLAST of CmaCh12G002970 vs. NCBI nr
Match: XP_023537797.1 (uncharacterized protein LOC111798715 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 451.4 bits (1160), Expect = 5.8e-123 Identity = 242/252 (96.03%), Postives = 243/252 (96.43%), Query Frame = 0
BLAST of CmaCh12G002970 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30 Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 0
BLAST of CmaCh12G002970 vs. TAIR 10
Match: AT2G24550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). ) HSP 1 Score: 108.6 bits (270), Expect = 8.6e-24 Identity = 97/255 (38.04%), Postives = 137/255 (53.73%), Query Frame = 0
BLAST of CmaCh12G002970 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 3.3e-23 Identity = 77/180 (42.78%), Postives = 110/180 (61.11%), Query Frame = 0
BLAST of CmaCh12G002970 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 7.1e-10 Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 0
BLAST of CmaCh12G002970 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 9.3e-10 Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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