CmaCh12G002550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G002550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	exosome complex exonuclease RRP46 homolog
Location	Cma_Chr12: 1295756 .. 1299556 (+)
RNA-Seq Expression	CmaCh12G002550
Synteny	CmaCh12G002550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCCCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGTCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGCTATTCTTTTTCTTTCTAATCGTTTGAAATCACCTGTGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGATCCGCCAGTTGGTCTCAAGGTCTCTCCGTCTTCTACCATCACTTCTTAGTTCTTGTTTCATTAGTTTGTGATTTCGTTCGATTTCGGGAACTTTTCTTATGAGAGGTTTGTGTAATCTGGATTTTACAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGTACGTTTCTTTACTTTCTTATTCACTTTGTTTTATCCATCTCTAAATCGTATGATAAAGTTCTTATCCCATGAATATTTGTAGTTCAGTAAATTTCTTACGTATTATTGCCATTCAAAGTATGGCATTCAATGAACATACTGTCTAGTTTTTGTACTTTATTGATTCTGAAGCATATGGATGATATTCTCTGAATCTCATCAATGCATCTTCTTACATTTGATAATGTATTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACCACATCTATTGTAGTTCAGGTGAGTCCACTTTCCCCCCTTTTTGGTTCAAGATTCCTGTGATATATTGCTGGTCTTTTGATGTTTAAAACGTAATATACATGAAATGGGTATCTCAAAATCTTGTTGAAGGTAACCAATCTCTGAGCCTGCATAAAAGATGCACAACCTTAAAGTTTAAAATTTAGCATTACTTTTTATACATTCATATATAGAAAGTAATGTTATTACTCATGCTTGGGACTTAGCAAATTCCCTTCATTCCAATCTTCCTTTAGTCTGAACGAACACGTTTATTAAGATTTTTTGCTTGACTACTCCTAACATGGATATTTACATAGCCAGCGCATGTTACATCATTTTATTTTATATCTGAAACTTCTAAATATTATGTATAAGAAATAAGTAGCTGGAACATGCTATTATGTTACTGAAACTTCTGTTGCTGAAAAAGTGTAAATATTTTAAAACCATCAAGGACGACCTCGATGCGAAATTGTTCGTTGTAGGAAATTAACACCTTTTCATTTTCCATCTCATGAAAAATGTTTTGGACTGTCAGCTTTGAAATACATTATGTTTAGGGCATTTATACTAATAATGTTGCACTTAGTTTCTTATCTCAAATACATTGATATTTCCCCCTGTAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTGATTTAATACCTCGTTTTTAGATTACTAAAAATAATGTTAGGAAAATATAAGTATGTTAAGACACGCAATTCATGTCATCGTGATCCTATTCAAACTGATTTACTAACACTATCCTTGGAAGTCGAACCTGGGTCCAAGTCCTCACAGCTACATTATAAGTGCTCTAACCAATTATGCTATATGAGAGCTGATTCACGTTAATCTTACACGGGGAACTACTGTTTTGTCGAGGAAAAGGGAAGAACTAGGGCCTACATATGAACATGGACAGTTATTTTATCTGTTCATTGGGTCAAAAATCTAGATATTCTGTGATCCCCTGCCTAGGGACACGGTGGAAGAGCTCCCCTAATATATCACATTGATTTTTCTTCTAAATTTGAAGTGACATTTGTTTAAAATGTTCCAATGTCATGCCACTGTAAAAAAAATGTTTTTTTTTTTTACCTTGTATAGGTTTGATATTCTGTCAACTTATGTACCACACATGAGCATTATTTTTTCTTTATTTGTGGGAATACCTTTCTTGAAATATCTTCATGAAGAACTTCTTTGACAGAGCCCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCTAATTTTATGGTCTTATTATTCATGGATTCACTTGGTAAATTAATGGTTGGCACTGACTACTCTGCACTGCATGTTGCAGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGGTTGGTAAATTTACTTATTGAATCTGTAATACTTCCTCTGGCAATGCTTGTCCAATGTTTGCAGTTAATTTTTATATGCATGATAAAAGTCATAGATATGGTCCATATGCAAATTTGCCATGCTTGGGGTTGGCTAAGTAGTTACAGATTATTGAATTTATCAAAGAAAAAGAGAAAAAATGAAAATTGTTTAATTTGATTATCAAACGAGTGAATTTAAAGAAAAGTGAACTCAAAATGCAGAAAATGAAGGCTTCTGTACATTTGGTCTTTCCGAACTCACCCGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGGAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGGTATGTTGTGCACGAAACCAAGCTATGTTCCAGTAGTCGTAATTGAAAATGTGCATATTTGTACTATGTTTGAATTTTAGGATGTCAGTGTCCCAATAAGCTCATACTGAGTATTCACTTCTATATTATGTTAATGATCACATATTTTTATACCAAGAACTAAATGCATCTCATGCCTGAGGCTCCAATACATTTTGAACACGCATCTGGCTCACCCCCTTTAGTAACGCACAGCAAGTTTCTTGTTTCTTTTGTGGTTGTTTTTTTCATTCATGATCTTCATTTTCTTGACACCATGGCACACTTCGATGGACAAAATAAACCATTTATTAGCAATGGATACGGCATATTTCTCTCATCATGTCATGTACTTTCTATCTAATGCCGTTTTGTGATCGAAAATGTACTTGGATCTTATTATAGCATCAAATGTCAAAACGGGTAGAGTTAGTCTTTTCTTGGGTTACCAATGGAATCTGAAAAATGTGAATGTTAGATGGAAAAACAAGCATGGGATCTAATTATTGTTGTTGTTTATCTGAAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGTCGGCTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTACTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGGTGCATTGTACGTTTACTCTTCTTTTTGTTGTGCATTTGTTTGATATTGTAGCTTTAAAATGATGTCTTCAAAGTGGTAATTCAAAAGAGACAAATTTCCAGGTGAAAGAGACTCCCTGGATGGAGAGAAGGGTGAGAACAGTGTGATTGATTGAAGAATGTTTGTAGTAGCACCTTTCCCTCTCTCGAGGAGTGAGTGGTGTGTGTTACGAACTATTGACCTCCAAAATGGTATGATATTGTCTGCAT

mRNA sequence

GGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCCCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGTCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGCTATTCTTTTTCTTTCTAATCGTTTGAAATCACCTGTGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGATCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACCACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCTTCTGTACATTTGGTCTTTCCGAACTCACCCGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGGAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGTCGGCTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTACTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGGTGCATTGTGAAAGAGACTCCCTGGATGGAGAGAAGGGTGAGAACAGTGTGATTGATTGAAGAATGTTTGTAGTAGCACCTTTCCCTCTCTCGAGGAGTGAGTGGTGTGTGTTACGAACTATTGACCTCCAAAATGGTATGATATTGTCTGCAT

Coding sequence (CDS)

ATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGATCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACCACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCTTCTGTACATTTGGTCTTTCCGAACTCACCCGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGGAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGTCGGCTGA

Protein sequence

MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

Homology

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BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot
Match: Q9LX74 (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.5e-100
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

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BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot
Match: Q84T68 (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 9.9e-79
Identity = 152/241 (63.07%), Postives = 184/241 (76.35%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT +LAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+++QV+ +DG+   LLP
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S
Sbjct: 121 CAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
              +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P 
Sbjct: 181 ASSKEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPG 237

Query: 241 D 242
           D
Sbjct: 241 D 237

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BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot
Match: Q9NQT4 (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.3e-32
Identity = 79/222 (35.59%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDA 133
           G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 134 GIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVGGEP 193
           G+P++ L   ++C L   G ++LDPT  +E++ +A +                     + 
Sbjct: 148 GVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFAL-----------------DS 207

Query: 194 LENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 236
           +E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 VERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot
Match: Q9CRA8 (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-31
Identity = 78/222 (35.14%), Postives = 124/222 (55.86%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDA 133
           G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 134 GIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVGGEP 193
           G+P++ L   ++C L   G ++LDPT  +E++ +A +     ++                
Sbjct: 148 GVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA---------------- 207

Query: 194 LENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 236
            E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 -EQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot
Match: Q4JB27 (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-15
Identity = 66/240 (27.50%), Postives = 118/240 (49.17%), Query Frame = 0


Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TK++AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAV 124
           V +        + K     + E E   +++  L+S  +L + P T   I ++V+  D   
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 SLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFP 184
            L+   A+ A+  AL DAGIP++ L   ++   ++ G ++LD  + E+   +A +     
Sbjct: 136 RLV---ALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEADM----- 195

Query: 185 NSPVSVIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 236
             P++V+P          L   ++  L  G M+ D++    E  +   + + A  + +L+
Sbjct: 196 --PIAVLPS---------LGQVVLLQL-NGFMTPDEFRRAFELAQKGISSIYALQKEALK 234

[Close]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL
Match: A0A6J1KQK5 (exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC111496308 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.1e-131
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT
Sbjct: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKVG 247
           DSSKVG
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL
Match: A0A6J1GI69 (exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454378 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 242/246 (98.37%), Postives = 242/246 (98.37%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIPEGSTQV GEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT
Sbjct: 181 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKVG 247
           DSSKVG
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL
Match: A0A6J1BU99 (exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004823 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.4e-123
Identity = 229/244 (93.85%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIP+GSTQV  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP 
Sbjct: 181 VIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPA 240

Query: 241 DSSK 245
           DSSK
Sbjct: 241 DSSK 241

[Close]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL
Match: A0A0A0LLJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 241 DSSKVG 247
           +SSK G
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL
Match: A0A5A7VGL5 (Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003630 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.9e-123
Identity = 225/246 (91.46%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGSTQ  GEPLE+G+ITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  
Sbjct: 181 VVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSM 240

Query: 241 DSSKVG 247
           DSSK G
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CmaCh12G002550 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 477.6 bits (1228), Expect = 6.3e-131
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT
Sbjct: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKVG 247
           DSSKVG
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CmaCh12G002550 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exosome complex exonuclease RRP46-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020307.1 Exosome complex exonuclease RRP46-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475.3 bits (1222), Expect = 3.1e-130
Identity = 242/246 (98.37%), Postives = 242/246 (98.37%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIPEGSTQV GEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT
Sbjct: 181 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKVG 247
           DSSKVG
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CmaCh12G002550 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.9 bits (1213), Expect = 3.5e-129
Identity = 240/246 (97.56%), Postives = 242/246 (98.37%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIPEGSTQV GEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT
Sbjct: 181 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240

Query: 241 DSSKVG 247
           DSSKVG
Sbjct: 241 DSSKVG 243

[Close]

BLAST of CmaCh12G002550 vs. NCBI nr
Match: XP_022131722.1 (exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131723.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131724.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 229/244 (93.85%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           VIP+GSTQV  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP 
Sbjct: 181 VIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPA 240

Query: 241 DSSK 245
           DSSK
Sbjct: 241 DSSK 241

[Close]

BLAST of CmaCh12G002550 vs. NCBI nr
Match: XP_004150286.1 (exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothetical protein Csa_022164 [Cucumis sativus])

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 241 DSSKVG 247
           +SSK G
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CmaCh12G002550 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmaCh12G002550 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmaCh12G002550 vs. TAIR 10
Match: AT3G46210.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmaCh12G002550 vs. TAIR 10
Match: AT3G46210.4 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmaCh12G002550 vs. TAIR 10
Match: AT3G46210.5 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 121 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 180
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 181 VIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 240
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 241 DSSKVG 247
            SSK G
Sbjct: 241 SSSKAG 239

The following BLAST results are available for this feature:

BLAST of CmaCh12G002550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX74	3.5e-100	72.36	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
Q84T68	9.9e-79	63.07	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9NQT4	5.3e-32	35.59	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
Q9CRA8	5.9e-31	35.14	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
Q4JB27	3.5e-15	27.50	Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ...	[more]

BLAST of CmaCh12G002550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQK5	3.1e-131	98.78	exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GI69	1.5e-130	98.37	exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1BU99	1.4e-123	93.85	exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3...	[more]
A0A0A0LLJ9	1.8e-123	91.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
A0A5A7VGL5	8.9e-123	91.46	Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CmaCh12G002550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002484.1	6.3e-131	98.78	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_022951618.1	3.1e-130	98.37	exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exo...	[more]
XP_023538111.1	3.5e-129	97.56	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022131722.1	2.8e-123	93.85	exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_0...	[more]
XP_004150286.1	3.7e-123	91.87	exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothet...	[more]

BLAST of CmaCh12G002550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46210.1	2.5e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	2.5e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.3	2.5e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.4	2.5e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.5	2.5e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..136 e-value: 2.0E-23 score: 83.3
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..244 e-value: 1.4E-67 score: 229.6
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 139..219 e-value: 1.3E-4 score: 21.9
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 1..236
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..236
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..231 e-value: 2.1552E-80 score: 237.848
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 136..236
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 12..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G002550.1	CmaCh12G002550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0005840	ribosome
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
molecular_function	GO:0004536	deoxyribonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003727	single-stranded RNA binding