CmaCh12G002110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G002110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	BnaC07g27580D protein
Location	Cma_Chr12: 1037166 .. 1037843 (+)
RNA-Seq Expression	CmaCh12G002110
Synteny	CmaCh12G002110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCACGTGCACAAAGTTGCTACATGCGGTGGCTCTGTCCCTGCTCATAAGATGTAACCATAGCCCCATTCCATGCGTGCATAAACCATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGTTAGTTAGTTCTGTTACTTTTTTGAATTAGGATTATTTGAACTCTCGAAACTGTATTAACGGAAAATGAAGTTTGGCAGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAATTTGCGCATAATATTCTAGAATGAATCATCAAAAGTTTAGCCCTCCCCCTTGTAACCATTTCGTCTTACAATTTTTCAAATTTTTGTAAATTTTTTATAAATGCTAGGTTCATATTTCATTATATGTATGGTATATTTCCTATTTGATCGGTTTGAATTCGAATTCTATATTTCGAGTTGCGATGGGATCTATTCCTTCTATATCCAATTTAAATCATTGGATCAA

mRNA sequence

TGGCACGTGCACAAAGTTGCTACATGCGGTGGCTCTGTCCCTGCTCATAAGATGTAACCATAGCCCCATTCCATGCGTGCATAAACCATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAATTTGCGCATAATATTCTAGAATGAATCATCAAAAGTTTAGCCCTCCCCCTTGTAACCATTTCGTCTTACAATTTTTCAAATTTTTGTAAATTTTTTATAAATGCTAGGTTCATATTTCATTATATGTATGGTATATTTCCTATTTGATCGGTTTGAATTCGAATTCTATATTTCGAGTTGCGATGGGATCTATTCCTTCTATATCCAATTTAAATCATTGGATCAA

Coding sequence (CDS)

ATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAA

Protein sequence

MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT

Homology

[Close]

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60
          MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 94

[Close]

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 89/98 (90.82%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MDEIRAST----PPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVG 60
          MDEIRAST    PP QD+GAGRFSG KEEASVMDRVKKGC AVYASSQEALRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          WGKKMTAKSEKEAAEADLKMAKMQVEATEAAEN KKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 98

[Close]

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.5e-30
Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MDEIRA--STPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWG 60
          MDE RA  STPP QDDGA  FSG K+EASVMDRVKKGC + YASSQE L YVKAFFVGWG
Sbjct: 1  MDETRAATSTPP-QDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWG 60

Query: 61 KKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          KK+TAKSEKEAAEADLK AKMQV+ATEAAEN K GT
Sbjct: 61 KKITAKSEKEAAEADLKTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MDEIRA--STPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWG 60
          MDE RA  STPP QDDGA  FSG K+EASVMDRVKKGC + YASSQE L YVKAFFVGWG
Sbjct: 1  MDETRAATSTPP-QDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWG 60

Query: 61 KKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          KK+TAKSEKEAAEADL+ AKMQV+ATEAAEN K GT
Sbjct: 61 KKITAKSEKEAAEADLRTAKMQVQATEAAENLKNGT 95

[Close]

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 29 MDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 88
          MDR+K GCM+ YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 89 NTK 92
          NTK
Sbjct: 61 NTK 63

[Close]

BLAST of CmaCh12G002110 vs. NCBI nr
Match: XP_023001883.1 (uncharacterized protein LOC111495934 [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 7.2e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60
          MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 94

[Close]

BLAST of CmaCh12G002110 vs. NCBI nr
Match: XP_022951050.1 (uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothetical protein SDJN03_18085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 5.9e-37
Identity = 89/98 (90.82%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MDEIRAST----PPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVG 60
          MDEIRAST    PP QD+GAGRFSG KEEASVMDRVKKGC AVYASSQEALRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          WGKKMTAKSEKEAAEADLKMAKMQVEATEAAEN KKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 98

[Close]

BLAST of CmaCh12G002110 vs. NCBI nr
Match: KAG7020262.1 (hypothetical protein SDJN02_16945, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 89/100 (89.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MDEIRAST------PPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFF 60
           MDEIRAST      PP QD+GAGRFSG KEEASVMDRVKKGC AVYASSQEALRYVKAFF
Sbjct: 1   MDEIRASTPPPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFF 60

Query: 61  VGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
           VGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAEN KKGT
Sbjct: 61  VGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 100

[Close]

BLAST of CmaCh12G002110 vs. NCBI nr
Match: XP_023537005.1 (uncharacterized protein LOC111798221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MDEIRAST--PPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWG 60
          MDEIRAST  PP QD+GAGRFSG KEEASVMDRVKKGC AVYASSQEA+RYVKAF VGWG
Sbjct: 1  MDEIRASTPPPPPQDEGAGRFSGSKEEASVMDRVKKGCTAVYASSQEAVRYVKAFLVGWG 60

Query: 61 KKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          KKM A+SEKEAAEADLKMAKMQVEATEAAEN KKGT
Sbjct: 61 KKMAARSEKEAAEADLKMAKMQVEATEAAENAKKGT 96

[Close]

BLAST of CmaCh12G002110 vs. NCBI nr
Match: XP_038886259.1 (uncharacterized protein LOC120076486 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 77/93 (82.80%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60
          MDEIRAS+ P QDDGAG FSG K+EASVMD VKKG     ASSQE LRYVKAFFVGWGKK
Sbjct: 1  MDEIRASSTPPQDDGAGTFSGRKQEASVMDGVKKGWRFFCASSQETLRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKKG 94
          MTAKSEKEAAEADLK AKMQV+ATEAAENTK+G
Sbjct: 61 MTAKSEKEAAEADLKTAKMQVQATEAAENTKRG 93

[Close]

BLAST of CmaCh12G002110 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-13
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 27 SVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEA 86
          S+ DRVK  C+++  + QE   YVKAFFVG  K++TAK+EKEA EA L   KMQV+AT+ 
Sbjct: 13 SLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDE 72

Query: 87 AENTKK 93
          AEN KK
Sbjct: 73 AENAKK 78

The following BLAST results are available for this feature:

BLAST of CmaCh12G002110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G002110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRV8	3.5e-43	100.00	uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934...	[more]
A0A6J1GHI8	2.9e-37	90.82	uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A5A7VBV2	7.5e-30	81.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BC67	1.7e-29	80.21	uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=...	[more]
A0A6J1BRY6	1.2e-19	84.13	uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of CmaCh12G002110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001883.1	7.2e-43	100.00	uncharacterized protein LOC111495934 [Cucurbita maxima]	[more]
XP_022951050.1	5.9e-37	90.82	uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothet...	[more]
KAG7020262.1	1.0e-36	89.00	hypothetical protein SDJN02_16945, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023537005.1	3.2e-35	88.54	uncharacterized protein LOC111798221 [Cucurbita pepo subsp. pepo]	[more]
XP_038886259.1	1.8e-30	82.80	uncharacterized protein LOC120076486 [Benincasa hispida]	[more]

BLAST of CmaCh12G002110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38465.1	3.7e-13	57.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G002110.1	CmaCh12G002110.1	mRNA