CmaCh12G001500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G001500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNDR1/HIN1-like protein 13
LocationCma_Chr12: 658858 .. 659519 (-)
RNA-Seq ExpressionCmaCh12G001500
SyntenyCmaCh12G001500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCAGAGCGGGCTCGCTCTTCTTACTCTCTGCCCGACCCTCCTATCTTCTCCTCTGGCACCTACGTCGTCCAGATCCCGAAGGACCAAATCTATCGTATTCCTCCCCCTGAAAATGCCCTTATCGTCGAGCGTCATCGTAACCCTTCTGTCGAATCCTCCCAACATCGACGCTCTTGTTGTCTCCGCTTCTTCCTCCCCATCGCCGCCCTCCTCCTCGTCATCATTCTCCTAACCGTTCTTCTCCCTCCTCTCCTCGCCTCTCCCAAACCCCCCATCGTCAAACTCACCACATTCAAACTCGCTCCTTCTGGCCACGACTTCCACATCAAACTCAACATCCATAACCCTAACTCTGTTGGCTCAATGTCTTTCAAATCCCCATCACATGCCTTCCTATCATTTCGGAAACACGAACTTGCTACTGCGAAATTCCCGCTCATCCACCAAGAACATGGCTCCGAAGAACATGTCACGCTATCATTCCATGCAAAATCATCGTCTTCCTTCCCTAAGGAGTTCAAGCGGCGGATGGAAGACAAAAAGTCTAAACTCCACGTGGCCATGTCTTTGAAGATGAATCTTCCGACAGAAACAATAGGTCGCTTATCGATGCATCGAAATGTCGAATTTGTTGTTGTTTGTAGTTTCACGGTTAA

mRNA sequence

ATGGACTCAGAGCGGGCTCGCTCTTCTTACTCTCTGCCCGACCCTCCTATCTTCTCCTCTGGCACCTACGTCGTCCAGATCCCGAAGGACCAAATCTATCGTATTCCTCCCCCTGAAAATGCCCTTATCGTCGAGCGTCATCGTAACCCTTCTGTCGAATCCTCCCAACATCGACGCTCTTGTTGTCTCCGCTTCTTCCTCCCCATCGCCGCCCTCCTCCTCGTCATCATTCTCCTAACCGTTCTTCTCCCTCCTCTCCTCGCCTCTCCCAAACCCCCCATCGTCAAACTCACCACATTCAAACTCGCTCCTTCTGGCCACGACTTCCACATCAAACTCAACATCCATAACCCTAACTCTGTTGGCTCAATGTCTTTCAAATCCCCATCACATGCCTTCCTATCATTTCGGAAACACGAACTTGCTACTGCGAAATTCCCGCTCATCCACCAAGAACATGGCTCCGAAGAACATGTCACGCTATCATTCCATGCAAAATCATCGTCTTCCTTCCCTAAGGAGTTCAAGCGGCGGATGGAAGACAAAAAGTCTAAACTCCACGTGGCCATGTCTTTGAAGATGAATCTTCCGACAGAAACAATAGGTCGCTTATCGATGCATCGAAATGTCGAATTTGTTGTTTTTCACGGTTAA

Coding sequence (CDS)

ATGGACTCAGAGCGGGCTCGCTCTTCTTACTCTCTGCCCGACCCTCCTATCTTCTCCTCTGGCACCTACGTCGTCCAGATCCCGAAGGACCAAATCTATCGTATTCCTCCCCCTGAAAATGCCCTTATCGTCGAGCGTCATCGTAACCCTTCTGTCGAATCCTCCCAACATCGACGCTCTTGTTGTCTCCGCTTCTTCCTCCCCATCGCCGCCCTCCTCCTCGTCATCATTCTCCTAACCGTTCTTCTCCCTCCTCTCCTCGCCTCTCCCAAACCCCCCATCGTCAAACTCACCACATTCAAACTCGCTCCTTCTGGCCACGACTTCCACATCAAACTCAACATCCATAACCCTAACTCTGTTGGCTCAATGTCTTTCAAATCCCCATCACATGCCTTCCTATCATTTCGGAAACACGAACTTGCTACTGCGAAATTCCCGCTCATCCACCAAGAACATGGCTCCGAAGAACATGTCACGCTATCATTCCATGCAAAATCATCGTCTTCCTTCCCTAAGGAGTTCAAGCGGCGGATGGAAGACAAAAAGTCTAAACTCCACGTGGCCATGTCTTTGAAGATGAATCTTCCGACAGAAACAATAGGTCGCTTATCGATGCATCGAAATGTCGAATTTGTTGTTTTTCACGGTTAA

Protein sequence

MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRSCCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSVGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMEDKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVVFHG
Homology
BLAST of CmaCh12G001500 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 0

Query: 8   SSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS---CCLR 67
           SS   P  P     TYV+Q+PKDQIYRIPPPENA     HR   +   +  RS   CC  
Sbjct: 22  SSGEFPKKPAPPPSTYVIQVPKDQIYRIPPPENA-----HRFEQLSRKKTNRSNCRCCFC 81

Query: 68  FFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKL--------APSGHDFHIKLNIH 127
            FL    +L+V+  ++  +  L+  P+ P   +  F +        +P    F++ +   
Sbjct: 82  SFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSR 141

Query: 128 NPNSVGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFK 187
           N N    + ++  S   + +   +++    P+ +Q   +   V L   + S        +
Sbjct: 142 NGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVL-SGSKIQLTSGMR 201

Query: 188 RRMEDKKSKLHVAMSLKMNLPTE 200
           + M ++ SK  V   LK+  P +
Sbjct: 202 KEMRNEVSKKTVPFKLKIKAPVK 218

BLAST of CmaCh12G001500 vs. ExPASy TrEMBL
Match: A0A6J1KRQ0 (NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111496611 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.9e-113
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME
Sbjct: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV
Sbjct: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 214

BLAST of CmaCh12G001500 vs. ExPASy TrEMBL
Match: A0A6J1GJ42 (NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111454733 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.6e-110
Identity = 207/214 (96.73%), Postives = 209/214 (97.66%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPI ALLLVIILL VLLPPLLASPKPPIVK+TTFKLAPSGHDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPITALLLVIILLAVLLPPLLASPKPPIVKITTFKLAPSGHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           +GSMSFKSPSHAFLSFRKHELATAKFPLI QEHGSEEHVTL FHAKSSSSFPKEFKRRME
Sbjct: 121 IGSMSFKSPSHAFLSFRKHELATAKFPLIQQEHGSEEHVTLVFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHVAMSLKMNLP ETIGRLSMHRNVEFVV
Sbjct: 181 DKKSKLHVAMSLKMNLPAETIGRLSMHRNVEFVV 214

BLAST of CmaCh12G001500 vs. ExPASy TrEMBL
Match: A0A5A7VCB9 (NDR1/HIN1-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001420 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.2e-68
Identity = 139/202 (68.81%), Postives = 164/202 (81.19%), Query Frame = 0

Query: 13  PDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRSCCLRFFLPIAAL 72
           PDPP FSSGTYVVQIPKDQIYRIPPPENALIV+RHRNPSV +S  RRSCC R FLPI  +
Sbjct: 16  PDPPFFSSGTYVVQIPKDQIYRIPPPENALIVQRHRNPSVVTSSRRRSCCFRIFLPIFIV 75

Query: 73  LLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSVGSMSFKSPSHA 132
           LL+II+L +L+PPL+A PKPP+ KLT FKL PS  +F+I L+I NPNS GS+SFKSPS  
Sbjct: 76  LLLIIILALLIPPLIALPKPPVFKLTKFKLTPSTRNFNINLDILNPNSAGSISFKSPSRV 135

Query: 133 FLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMEDKKSKLHVAMSL 192
            LSFRK +LAT KFPLI Q+HGS+++V LS  AK  S+FPKE +RRM+  K+KLH ++SL
Sbjct: 136 SLSFRKSQLATTKFPLIRQDHGSKKNVALSLRAK--SAFPKELQRRMKSSKTKLHTSLSL 195

Query: 193 KMNLPTETIGRLSMHRNVEFVV 215
           KMNL  ET GRLS  RNV+FVV
Sbjct: 196 KMNLLAETKGRLSNRRNVKFVV 215

BLAST of CmaCh12G001500 vs. ExPASy TrEMBL
Match: A0A1S3BD32 (uncharacterized protein LOC103488571 OS=Cucumis melo OX=3656 GN=LOC103488571 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.2e-68
Identity = 139/202 (68.81%), Postives = 164/202 (81.19%), Query Frame = 0

Query: 13  PDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRSCCLRFFLPIAAL 72
           PDPP FSSGTYVVQIPKDQIYRIPPPENALIV+RHRNPSV +S  RRSCC R FLPI  +
Sbjct: 16  PDPPFFSSGTYVVQIPKDQIYRIPPPENALIVQRHRNPSVVTSSRRRSCCFRIFLPIFIV 75

Query: 73  LLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSVGSMSFKSPSHA 132
           LL+II+L +L+PPL+A PKPP+ KLT FKL PS  +F+I L+I NPNS GS+SFKSPS  
Sbjct: 76  LLLIIILALLIPPLIALPKPPVFKLTKFKLTPSTRNFNINLDILNPNSAGSISFKSPSRV 135

Query: 133 FLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMEDKKSKLHVAMSL 192
            LSFRK +LAT KFPLI Q+HGS+++V LS  AK  S+FPKE +RRM+  K+KLH ++SL
Sbjct: 136 SLSFRKSQLATTKFPLIRQDHGSKKNVALSLRAK--SAFPKELQRRMKSSKTKLHTSLSL 195

Query: 193 KMNLPTETIGRLSMHRNVEFVV 215
           KMNL  ET GRLS  RNV+FVV
Sbjct: 196 KMNLLAETKGRLSNRRNVKFVV 215

BLAST of CmaCh12G001500 vs. ExPASy TrEMBL
Match: A0A0A0LK43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G307330 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.2e-68
Identity = 141/202 (69.80%), Postives = 163/202 (80.69%), Query Frame = 0

Query: 13  PDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRSCCLRFFLPIAAL 72
           PD   FSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSV +S  RRSCC R FLPI  L
Sbjct: 16  PDSLFFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVVTSSRRRSCCFRIFLPIFVL 75

Query: 73  LLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSVGSMSFKSPSHA 132
           LL+II+L +LLPPLL  PKPP+++L  FKL PS  +F I L+I NPNSVGS+SFKSPS  
Sbjct: 76  LLLIIILALLLPPLLTLPKPPVIELKKFKLTPSTRNFLINLDILNPNSVGSISFKSPSRV 135

Query: 133 FLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMEDKKSKLHVAMSL 192
            LSFRK++LAT KFPLI Q+HGSE+ V LS  AK  S+FPKE KRRM++ K+KLH ++SL
Sbjct: 136 SLSFRKNQLATTKFPLIRQQHGSEKKVALSLRAK--SAFPKELKRRMKNNKTKLHTSLSL 195

Query: 193 KMNLPTETIGRLSMHRNVEFVV 215
           KMNL  +TIGRLS  RNV+FVV
Sbjct: 196 KMNLAAQTIGRLSNRRNVKFVV 215

BLAST of CmaCh12G001500 vs. NCBI nr
Match: XP_023002874.1 (NDR1/HIN1-like protein 13 [Cucurbita maxima])

HSP 1 Score: 418.3 bits (1074), Expect = 4.0e-113
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME
Sbjct: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV
Sbjct: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 214

BLAST of CmaCh12G001500 vs. NCBI nr
Match: XP_023537818.1 (NDR1/HIN1-like protein 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.8 bits (1057), Expect = 3.8e-111
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPIAALLLVIILL VLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPIAALLLVIILLAVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTL+FHAKSSSSFPKEFKRRME
Sbjct: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLAFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHV MSLKMNLP ETIGRLSMHRNVEFVV
Sbjct: 181 DKKSKLHVVMSLKMNLPAETIGRLSMHRNVEFVV 214

BLAST of CmaCh12G001500 vs. NCBI nr
Match: KAG6585287.1 (Endoplasmic reticulum-Golgi intermediate compartment protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPIAALLLVIILL VLLPPLLASPKPPIVKLTTFKLAPS HDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPIAALLLVIILLAVLLPPLLASPKPPIVKLTTFKLAPSSHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTL+FHAKSSSSFPKEFKRRME
Sbjct: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLAFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHVAMSLKMNLPTETIGRLSM RNVEFVV
Sbjct: 181 DKKSKLHVAMSLKMNLPTETIGRLSMRRNVEFVV 214

BLAST of CmaCh12G001500 vs. NCBI nr
Match: XP_022952021.1 (NDR1/HIN1-like protein 13 [Cucurbita moschata])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 207/214 (96.73%), Postives = 209/214 (97.66%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS
Sbjct: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60

Query: 61  CCLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNS 120
           CCLRFFLPI ALLLVIILL VLLPPLLASPKPPIVK+TTFKLAPSGHDFHIKLNIHNPNS
Sbjct: 61  CCLRFFLPITALLLVIILLAVLLPPLLASPKPPIVKITTFKLAPSGHDFHIKLNIHNPNS 120

Query: 121 VGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRME 180
           +GSMSFKSPSHAFLSFRKHELATAKFPLI QEHGSEEHVTL FHAKSSSSFPKEFKRRME
Sbjct: 121 IGSMSFKSPSHAFLSFRKHELATAKFPLIQQEHGSEEHVTLVFHAKSSSSFPKEFKRRME 180

Query: 181 DKKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           DKKSKLHVAMSLKMNLP ETIGRLSMHRNVEFVV
Sbjct: 181 DKKSKLHVAMSLKMNLPAETIGRLSMHRNVEFVV 214

BLAST of CmaCh12G001500 vs. NCBI nr
Match: XP_038885823.1 (NDR1/HIN1-like protein 13, partial [Benincasa hispida])

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-69
Identity = 145/213 (68.08%), Postives = 167/213 (78.40%), Query Frame = 0

Query: 2   DSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRSC 61
           + ER  S    PDP +FS+GTYVVQIPKDQIYRIPPPENALIVERHRNPS+ +S  RRSC
Sbjct: 18  EPERVYSPPPPPDPSLFSAGTYVVQIPKDQIYRIPPPENALIVERHRNPSITTSSRRRSC 77

Query: 62  CLRFFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSV 121
           CLR FLPI  + ++I+LL +LLPPLL  PKPP+  L  FKL PS H FHI L+I NPNS 
Sbjct: 78  CLRIFLPIFFVFVLILLLALLLPPLLTPPKPPVFDLIKFKLTPSTHKFHINLDILNPNSA 137

Query: 122 GSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMED 181
           GS+SFKSPS A LSFRK +LATAKFPLI  EHGS+ HV LS HAK  SSFPKE +RRM++
Sbjct: 138 GSISFKSPSRASLSFRKQKLATAKFPLIRTEHGSQRHVALSLHAK--SSFPKELQRRMKN 197

Query: 182 KKSKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
            KSKLH++MSLKM+LP ET  RLS  R V+FVV
Sbjct: 198 -KSKLHISMSLKMDLPAETTSRLSTRREVKFVV 227

BLAST of CmaCh12G001500 vs. TAIR 10
Match: AT2G27080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 0

Query: 8   SSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS---CCLR 67
           SS   P  P     TYV+Q+PKDQIYRIPPPENA     HR   +   +  RS   CC  
Sbjct: 22  SSGEFPKKPAPPPSTYVIQVPKDQIYRIPPPENA-----HRFEQLSRKKTNRSNCRCCFC 81

Query: 68  FFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKL--------APSGHDFHIKLNIH 127
            FL    +L+V+  ++  +  L+  P+ P   +  F +        +P    F++ +   
Sbjct: 82  SFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSR 141

Query: 128 NPNSVGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFK 187
           N N    + ++  S   + +   +++    P+ +Q   +   V L   + S        +
Sbjct: 142 NGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVL-SGSKIQLTSGMR 201

Query: 188 RRMEDKKSKLHVAMSLKMNLPTE 200
           + M ++ SK  V   LK+  P +
Sbjct: 202 KEMRNEVSKKTVPFKLKIKAPVK 218

BLAST of CmaCh12G001500 vs. TAIR 10
Match: AT2G27080.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 0

Query: 8   SSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS---CCLR 67
           SS   P  P     TYV+Q+PKDQIYRIPPPENA     HR   +   +  RS   CC  
Sbjct: 22  SSGEFPKKPAPPPSTYVIQVPKDQIYRIPPPENA-----HRFEQLSRKKTNRSNCRCCFC 81

Query: 68  FFLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKL--------APSGHDFHIKLNIH 127
            FL    +L+V+  ++  +  L+  P+ P   +  F +        +P    F++ +   
Sbjct: 82  SFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSR 141

Query: 128 NPNSVGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFK 187
           N N    + ++  S   + +   +++    P+ +Q   +   V L   + S        +
Sbjct: 142 NGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVL-SGSKIQLTSGMR 201

Query: 188 RRMEDKKSKLHVAMSLKMNLPTE 200
           + M ++ SK  V   LK+  P +
Sbjct: 202 KEMRNEVSKKTVPFKLKIKAPVK 218

BLAST of CmaCh12G001500 vs. TAIR 10
Match: AT2G22180.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-08
Identity = 58/211 (27.49%), Postives = 95/211 (45.02%), Query Frame = 0

Query: 8   SSYSLPDP-PIFSSGTYVVQIPKDQIYRIPPPENALIVE-RHRNPSVESSQHRRSCCLRF 67
           SS  LP P  I    TYVVQ+P+DQ+Y  PPPE+A  VE R +NP     +      L F
Sbjct: 64  SSPPLPPPDSIPELETYVVQVPRDQVYWTPPPEHAKYVEKRSKNPEKNKKKGCSKRLLWF 123

Query: 68  FLPIAALLLVIILLTVLLPPLLASPKPPIVKLTTFKLAPSGHDFHIKLNIHNPNSVGSMS 127
           F+ I  +   ++   +L+     +P  P+  +    + PS  +F + L   NP S   + 
Sbjct: 124 FI-ILVIFGFLLGAIILILHFAFNPTLPVFAVERLTVNPS--NFEVTLRAENPTSNMGVR 183

Query: 128 FKSPSHAF--LSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSSSFPKEFKRRMEDKK 187
           +    +    L+++   L + KFP + Q     + V +  +  + ++        ++ + 
Sbjct: 184 YMMEKNGVVSLTYKNKSLGSGKFPGLSQAASGSDKVNVKLNGSTKNAV-------VQPRG 243

Query: 188 SKLHVAMSLKMNLPTETIGRLSMHRNVEFVV 215
           SK  V + L M L  E      + RN E VV
Sbjct: 244 SKQPVVLMLNMELKAEYEAG-PVKRNKEVVV 263

BLAST of CmaCh12G001500 vs. TAIR 10
Match: AT5G21130.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-08
Identity = 54/210 (25.71%), Postives = 94/210 (44.76%), Query Frame = 0

Query: 1   MDSERARSSYSLPDPPIFSSGTYVVQIPKDQIYRIPPPENALIVERHRNPSVESSQHRRS 60
           +DS+++R    +  PP    GTYV+++PKDQIYR+PPPENA     HR   +   +  +S
Sbjct: 44  VDSQKSR----IGPPP----GTYVIKLPKDQIYRVPPPENA-----HRYEYLSRRKTNKS 103

Query: 61  CCLR-FFLPIAALLLVIILLTVLLP--PLLASPKPP--------IVKLTTFKLAPSGHDF 120
           CC R     ++ALL++I+L  +      L+  P  P        +  +     +P     
Sbjct: 104 CCRRCLCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSPFSPVI 163

Query: 121 HIKLNIHNPNSVGSMSFKSPSHAFLSFRKHELATAKFPLIHQEHGSEEHVTLSFHAKSSS 180
            IKL   N      + ++  + A + F   +L   +F    Q  G+   V ++    SS 
Sbjct: 164 RIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAFKQPAGNVT-VIVTVLKGSSV 223

Query: 181 SFPKEFKRRMEDKKSKLHVAMSLKMNLPTE 200
                 ++ + + + K  V   L++  P +
Sbjct: 224 KLKSSSRKELTESQKKGKVPFGLRIKAPVK 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZVD23.6e-0826.11NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1KRQ01.9e-113100.00NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111496611 PE=4 SV=1[more]
A0A6J1GJ427.6e-11096.73NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111454733 PE=4 SV=... [more]
A0A5A7VCB94.2e-6868.81NDR1/HIN1-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3BD324.2e-6868.81uncharacterized protein LOC103488571 OS=Cucumis melo OX=3656 GN=LOC103488571 PE=... [more]
A0A0A0LK437.2e-6869.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G307330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_023002874.14.0e-113100.00NDR1/HIN1-like protein 13 [Cucurbita maxima][more]
XP_023537818.13.8e-11198.13NDR1/HIN1-like protein 13 [Cucurbita pepo subsp. pepo][more]
KAG6585287.11.4e-11098.13Endoplasmic reticulum-Golgi intermediate compartment protein 3, partial [Cucurbi... [more]
XP_022952021.11.6e-10996.73NDR1/HIN1-like protein 13 [Cucurbita moschata][more]
XP_038885823.11.6e-6968.08NDR1/HIN1-like protein 13, partial [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G27080.12.6e-0926.11Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT2G27080.22.6e-0926.11Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
AT2G22180.16.4e-0827.49hydroxyproline-rich glycoprotein family protein [more]
AT5G21130.16.4e-0825.71Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILYcoord: 14..214
NoneNo IPR availablePANTHERPTHR31852:SF159HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 14..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G001500.1CmaCh12G001500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane