CmaCh12G000190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G000190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	Cma_Chr12: 78140 .. 79114 (+)
RNA-Seq Expression	CmaCh12G000190
Synteny	CmaCh12G000190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGCCACGTCAAAGCCCAAGATGAAAATATATGTTTTGAAAATTGATAGAATGGAAAACCCTTTCAGAGCCCTAGAAATTTGAAGGTGAATCTGCAGGTGAGGTAGCGTCCGTAGGACCCGGAGACTAGCGCAGGAACCGACAATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTCAGCCATCCAGAATCATCTTCAATTTCACCTATCATGTCTTCTACTTACGCTTCTATGTGGAAGTCGCTTCTGAGAATTGTTTTTCTTTTTCTGTTTTCTATGTATCGTCGTATGTACAAATGCTTCGGTTTGTCTCCGCTCTTAAAGCGACATGGTTTATATTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCTGACTATTCCGAAGGGTGAGGAAGGACCCCTTTTTTCTTCATTCTTTTTTTCCCGTAATCCTTTGACCTTGCGTTTGAGATGCTAATGTATATTTTTCTTATATTAGGGATGCGCTTGATGCACTGGGTTTGGTTCGTTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATCGAGAAGCTTCTTAACTACAATAGTAAGCTCTCTCTCTGTCTCCCTCCCTTTCTGAAATCTCATGTTTGAGTTGTTAGATTTCTGAATTCAATCTTACACTAAAATTGCTTTCTGTCTCAGCCCTGGATAAGTCTGATACCAGTTAGGCGGGGGAGAAGTTATATGCTTATTCATGTGCAGCAGTCAGTATTGACCTTTTATGGTGTCTGAGTCAAGTTAAGAGAAAAGAAGAACTTTAGGAAGATTCAGTGCAGGACTACTCGAGTTAAGCTATATCTTGGTGTCCCAGTTTGTTTACTTGTTGATTATACGAACCCAACTATTTAATCTTCAAGTGTTTACTACTTTTAGGAGTTATTTATCAGAACCATGTACTTATCCTTGTCAAAGTTAG

mRNA sequence

ATGGCCCGCCACGTCAAAGCCCAAGATGAAAATATATGTAGCGTCCGTAGGACCCGGAGACTAGCGCAGGAACCGACAATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCTGACTATTCCGAAGGGGATGCGCTTGATGCACTGGGTTTGGTTCGTTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATCGAGAAGCTTCTTAACTACAATAGTAAGCTCTCTCTCTGTCTCCCTCCCTTTCTGAAATCTCATCCCTGGATAAGTCTGATACCAGTTAGGCGGGGGAGAAGTTATATGCTTATTCATGTGCAGCAAAGAACTTTAGGAAGATTCAGTGCAGGACTACTCGAGTTAAGCTATATCTTGGTGTCCCAGTTTGTTTACTTGTTGATTATACGAACCCAACTATTTAATCTTCAAGTGTTTACTACTTTTAGGAGTTATTTATCAGAACCATGTACTTATCCTTGTCAAAGTTAG

Coding sequence (CDS)

ATGGCCCGCCACGTCAAAGCCCAAGATGAAAATATATGTAGCGTCCGTAGGACCCGGAGACTAGCGCAGGAACCGACAATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCTGACTATTCCGAAGGGGATGCGCTTGATGCACTGGGTTTGGTTCGTTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATCGAGAAGCTTCTTAACTACAATAGTAAGCTCTCTCTCTGTCTCCCTCCCTTTCTGAAATCTCATCCCTGGATAAGTCTGATACCAGTTAGGCGGGGGAGAAGTTATATGCTTATTCATGTGCAGCAAAGAACTTTAGGAAGATTCAGTGCAGGACTACTCGAGTTAAGCTATATCTTGGTGTCCCAGTTTGTTTACTTGTTGATTATACGAACCCAACTATTTAATCTTCAAGTGTTTACTACTTTTAGGAGTTATTTATCAGAACCATGTACTTATCCTTGTCAAAGTTAG

Protein sequence

MARHVKAQDENICSVRRTRRLAQEPTMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSKLSLCLPPFLKSHPWISLIPVRRGRSYMLIHVQQRTLGRFSAGLLELSYILVSQFVYLLIIRTQLFNLQVFTTFRSYLSEPCTYPCQS

Homology

[Close]

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNS 91
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNS 91
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNS 91
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 87 NY 89
          NY
Sbjct: 61 NY 62

[Close]

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 87 NY 89
          NY
Sbjct: 61 NY 62

[Close]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL
Match: A0A3B6FVD0 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 6.9e-32
Identity = 74/94 (78.72%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSHPWISLIPVRRGRSYMLI 121
           NYNSKL L     L + PW      RR R   LI
Sbjct: 61  NYNSKLML-----LYNFPW------RRRRQVELI 83

[Close]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL
Match: W9RW11 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Morus notabilis OX=981085 GN=L484_007015 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 16  RRTRRLAQEPT--MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRR 75
           RR+RR   E +  MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRR
Sbjct: 105 RRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRR 164

Query: 76  MLMTHVDLIEKLLNYNSKLSLC 96
           MLMTHVDLIEKLLNYNS+ SLC
Sbjct: 165 MLMTHVDLIEKLLNYNSESSLC 186

[Close]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL
Match: A0A540N402 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008671 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNSKLSLCLPP 99
          NYNS LSL LPP
Sbjct: 61 NYNSNLSLPLPP 72

[Close]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL
Match: A0A446NTH6 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G210240 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSHPW 106
           NYNSKL L     L + PW
Sbjct: 61  NYNSKLML-----LCNFPW 74

[Close]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL
Match: A0A3B6EK89 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSHPW 106
           NYNSKL L     L + PW
Sbjct: 61  NYNSKLML-----LCNFPW 74

[Close]

BLAST of CmaCh12G000190 vs. NCBI nr
Match: KAG6782578.1 (hypothetical protein POTOM_011988 [Populus tomentosa])

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-32
Identity = 69/77 (89.61%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSH 104
           NYNS  SL  PP L SH
Sbjct: 61  NYNSNFSLFFPPPLPSH 77

[Close]

BLAST of CmaCh12G000190 vs. NCBI nr
Match: KAF7031339.1 (hypothetical protein CFC21_042683 [Triticum aestivum])

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-31
Identity = 74/94 (78.72%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSHPWISLIPVRRGRSYMLI 121
           NYNSKL L     L + PW      RR R   LI
Sbjct: 61  NYNSKLML-----LYNFPW------RRRRQVELI 83

[Close]

BLAST of CmaCh12G000190 vs. NCBI nr
Match: EXB99107.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 16  RRTRRLAQEPT--MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRR 75
           RR+RR   E +  MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRR
Sbjct: 105 RRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRR 164

Query: 76  MLMTHVDLIEKLLNYNSKLSLC 96
           MLMTHVDLIEKLLNYNS+ SLC
Sbjct: 165 MLMTHVDLIEKLLNYNSESSLC 186

[Close]

BLAST of CmaCh12G000190 vs. NCBI nr
Match: TQE05765.1 (hypothetical protein C1H46_008671 [Malus baccata])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNSKLSLCLPP 99
          NYNS LSL LPP
Sbjct: 61 NYNSNLSLPLPP 72

[Close]

BLAST of CmaCh12G000190 vs. NCBI nr
Match: VAH65403.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-31
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 27  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87  NYNSKLSLCLPPFLKSHPW 106
           NYNSKL L     L + PW
Sbjct: 61  NYNSKLML-----LCNFPW 74

[Close]

BLAST of CmaCh12G000190 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-31
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNS 91
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of CmaCh12G000190 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 131.3 bits (329), Expect = 7.5e-31
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 27 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 86
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 87 NYNS 91
          NYN+
Sbjct: 61 NYNT 64

The following BLAST results are available for this feature:

BLAST of CmaCh12G000190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	2.1e-30	92.19	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	1.1e-29	92.19	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	1.1e-29	92.19	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	1.1e-26	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	1.9e-26	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of CmaCh12G000190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3B6FVD0	6.9e-32	78.72	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
W9RW11	9.0e-32	86.59	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Morus notabilis OX...	[more]
A0A540N402	9.0e-32	94.44	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008671 PE=3 SV=1	[more]
A0A446NTH6	1.2e-31	87.34	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G...	[more]
A0A3B6EK89	1.2e-31	87.34	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]

BLAST of CmaCh12G000190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6782578.1	6.4e-32	89.61	hypothetical protein POTOM_011988 [Populus tomentosa]	[more]
KAF7031339.1	1.4e-31	78.72	hypothetical protein CFC21_042683 [Triticum aestivum]	[more]
EXB99107.1	1.8e-31	86.59	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis]	[more]
TQE05765.1	1.8e-31	94.44	hypothetical protein C1H46_008671 [Malus baccata]	[more]
VAH65403.1	2.4e-31	87.34	unnamed protein product [Triticum turgidum subsp. durum]	[more]

BLAST of CmaCh12G000190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.5e-31	92.19	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	7.5e-31	92.19	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 27..91 e-value: 1.8E-38 score: 132.5
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 27..90
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 27..85 e-value: 5.5E-31 score: 106.7
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 27..90
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 27..89 score: 19.33688
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 28..37
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 27..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G000190.1	CmaCh12G000190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding