CmaCh11G019650 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G019650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr11: 12884014 .. 12884883 (-)
RNA-Seq ExpressionCmaCh11G019650
SyntenyCmaCh11G019650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAAACTCAAATTCTTCTTGGTGAAGCGAACAAACCGACCTTTCGCCTCATTTCAATTTCCATGCACCTTCTCTTTTCCCACCATATTTATTAATATATAAACCTCCATGGATTCTTCATAAACTCGCATTCCAATTGAAATCCCTCCATCATTTCTCTACAATTCTCTAACTTTTCGTTGTTTATCTGCCATCAACAAATTCCCAGTAAGTTGAAGCTGCCACCCACTGATTTCATTTTCAATTACTACTTCTGCAGTTTATGTATATTAAACAGAGTGGTTGTTTATTTTTTAAATCTGTTGCAGTGGCCTATCCAGCGCCGCCTCCGTCGTATCCGGCGGTGGAGGAAGTGAAAGAGTCGAATTCGGGGCCTTATGTTGCAGCGCCGCCGCCTGTTGGGTATCCGGTGAGAGATGGTCCACAGTACCCGCACCAAACTTTTACGCCACAAACTCAATCCAAGGGGGATGGGTTTTGGAAAGGATGGTCAGTCTCCTCTCCTTCTAAAATATTTCGAACCTGCGTTTTAAATTCCCTTAAATTATGAGTTTTACAAGTATATATACAGAAATGATTATTGACAAAACTTATGGCTGTGTGCTTGTAGCGTTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTCTTCTGAGAATGCTGCCTACTTTGGTTACTGCTTTAGACTGGAGCGATTCACATTTGTTGTTTTATTATTATTATTACTATTACTATTACTATTATTATTATGCCCTTCCTTTTTGTATTTCTGGTATATACTAACTACCTTGTCTTATTTATCATTATTCGATTCACATTTCTTTTGTTAATAAATAAATTTTGCTTTATATTTTGTTTATAAAA

mRNA sequence

ATGATATCAAACTCAAATTCTTCTTGTGGCCTATCCAGCGCCGCCTCCGTCGTATCCGGCGGTGGAGGAAGTGAAAGAGTCGAATTCGGGGCCTTATGTTGCAGCGCCGCCGCCTGTTGGGTATCCGGTGAGAGATGGTCCACAGTACCCGCACCAAACTTTTACGCCACAAACTCAATCCAAGGGGGATGGGTTTTGGAAAGGATGCGTTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTCTTCTGAGAATGCTGCCTACTTTGGTTACTGCTTTAGACTGGAGCGATTCACATTTGTTGTTTTATTATTATTATTACTATTACTATTACTATTATTATTATGCCCTTCCTTTTTGTATTTCTGGTATATACTAACTACCTTGTCTTATTTATCATTATTCGATTCACATTTCTTTTGTTAATAAATAAATTTTGCTTTATATTTTGTTTATAAAA

Coding sequence (CDS)

ATGATATCAAACTCAAATTCTTCTTGTGGCCTATCCAGCGCCGCCTCCGTCGTATCCGGCGGTGGAGGAAGTGAAAGAGTCGAATTCGGGGCCTTATGTTGCAGCGCCGCCGCCTGTTGGGTATCCGGTGAGAGATGGTCCACAGTACCCGCACCAAACTTTTACGCCACAAACTCAATCCAAGGGGGATGGGTTTTGGAAAGGATGCGTTGCTGCGTTGTGTTGCTGCTGGGTGTTGGACTGTGTCTTCTGAGAATGCTGCCTACTTTGGTTACTGCTTTAGACTGGAGCGATTCACATTTGTTGTTTTATTATTATTATTACTATTACTATTACTATTATTATTATGCCCTTCCTTTTTGTATTTCTGGTATATACTAA

Protein sequence

MISNSNSSCGLSSAASVVSGGGGSERVEFGALCCSAAACWVSGERWSTVPAPNFYATNSIQGGWVLERMRCCVVLLLGVGLCLLRMLPTLVTALDWSDSHLLFYYYYYYYYYYYYYALPFCISGIY
Homology
[Close]
BLAST of CmaCh11G019650 vs. ExPASy TrEMBL
Match: A0A6J1ERB8 (uncharacterized protein LOC111437099 OS=Cucurbita moschata OX=3662 GN=LOC111437099 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.8e-42
Identity = 100/125 (80.00%), Postives = 102/125 (81.60%), Query Frame = 0 

Query: 2   ISNSNSSCGLSSAASVVSGGGGSERVEFGALCCSAAACWVSGERWSTVPAPNFYATNSIQ 61
           +S S +S GLSSAASVVSGGG SERVEFGALCCSAAA WVSGER STVPAP FYATNSIQ
Sbjct: 100 VSPSANSHGLSSAASVVSGGGASERVEFGALCCSAAASWVSGERRSTVPAPEFYATNSIQ 159

Query: 62  GGWVLERMRCCVVLLLGVGLCLLRMLPTLVTALDWSDSHLLFYYYYYYYYYYYYYALPFC 121
           GGWVLERMRCCVVLLLGVGLCLL MLPTLVTALDWSDSH LF YYY             C
Sbjct: 160 GGWVLERMRCCVVLLLGVGLCLLSMLPTLVTALDWSDSHSLFCYYY-------------C 211

Query: 122 ISGIY 127
           ISGIY
Sbjct: 220 ISGIY 211

[Close]
BLAST of CmaCh11G019650 vs. NCBI nr
Match: XP_022930702.1 (uncharacterized protein LOC111437099 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 100/125 (80.00%), Postives = 102/125 (81.60%), Query Frame = 0 

Query: 2   ISNSNSSCGLSSAASVVSGGGGSERVEFGALCCSAAACWVSGERWSTVPAPNFYATNSIQ 61
           +S S +S GLSSAASVVSGGG SERVEFGALCCSAAA WVSGER STVPAP FYATNSIQ
Sbjct: 100 VSPSANSHGLSSAASVVSGGGASERVEFGALCCSAAASWVSGERRSTVPAPEFYATNSIQ 159

Query: 62  GGWVLERMRCCVVLLLGVGLCLLRMLPTLVTALDWSDSHLLFYYYYYYYYYYYYYALPFC 121
           GGWVLERMRCCVVLLLGVGLCLL MLPTLVTALDWSDSH LF YYY             C
Sbjct: 160 GGWVLERMRCCVVLLLGVGLCLLSMLPTLVTALDWSDSHSLFCYYY-------------C 211

Query: 122 ISGIY 127
           ISGIY
Sbjct: 220 ISGIY 211

The following BLAST results are available for this feature:
BLAST of CmaCh11G019650 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh11G019650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ERB88.8e-4280.00uncharacterized protein LOC111437099 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
BLAST of CmaCh11G019650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930702.11.8e-4180.00uncharacterized protein LOC111437099 [Cucurbita moschata][more]
BLAST of CmaCh11G019650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G019650.1CmaCh11G019650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane