CmaCh11G017790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G017790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	diphthamide biosynthesis protein 3-like
Location	Cma_Chr11: 11903764 .. 11904428 (-)
RNA-Seq Expression	CmaCh11G017790
Synteny	CmaCh11G017790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGGTTATCATCAGTCCTAAGGGGGCCTATCTTTACGAGGAGTTGTGCATAAGGTCGGACTCCGTCCATCAACATTGGATATGAGTGCTCTTCATGTGCATGTGGCCATGATGTAGCATAATAATTCTAGCATGCTTAAACCTAATAAAAGAAAGAATTGAATGTGAGTTACACTTTGGAACTAGTTCAATAAAAAAAGCCTAATTTGGAGGCGGTCTCCCGAAATTCAGAGTCCACCAAATCCCTATAGCCCTTACTCAATCTTCTTCGTCTACCTCCGAATTCGTTGGTTGCAGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

mRNA sequence

ATGGCTACTACGTACCCATGTAGTCCTAATTTGCCGCAACGACCTAAATTAGAAACTGCAGTGTCTCCCTGACTCGCCATCGCCGCCAAATTAGCCGAATCCTCTGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

Coding sequence (CDS)

ATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTTCAGAAGAATAACACAGGACTTGAGCCTTATAAACAACGGCCTGCCGTTGTGGCTTAG

Protein sequence

MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPYKQRPAVVA

Homology

[Close]

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot
Match: Q6VUC1 (DPH3 homolog OS=Cricetulus griseus OX=10029 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +T  E  K
Sbjct: 65 MCGETVPAPSTNKELVK 81

[Close]

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot
Match: Q8K0W9 (DPH3 homolog OS=Mus musculus OX=10090 GN=Dph3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +T  E  K
Sbjct: 65 MCGETVPAPSTNKELVK 81

[Close]

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot
Match: Q1LZC9 (DPH3 homolog OS=Bos taurus OX=9913 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-17
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFCITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 -LGDSVQKNNTGLEPYK 79
            G++V   +T  E  K
Sbjct: 65 TCGETVPAPSTNKELVK 81

[Close]

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot
Match: Q96FX2 (DPH3 homolog OS=Homo sapiens OX=9606 GN=DPH3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-17
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 3  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF 62
          +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 L-GDSVQKNNTGLEPYK 79
          + G++V   +   E  K
Sbjct: 65 VCGETVPAPSANKELVK 81

[Close]

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot
Match: Q6CMG4 (Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DPH3 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 2  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMED 61
          +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED
Sbjct: 3  TYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMYDGEDIAVCPSCSLMIQVVFDKED 62

Query: 62 FLGDSVQKNNTGLEP 77
           +   V+ N   LEP
Sbjct: 63 LVEYYVEAN---LEP 74

[Close]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL
Match: A0A6J1EZW6 (diphthamide biosynthesis protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437758 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.0e-43
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDSVQKNNTGLEP KQRPAVVA
Sbjct: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 85

[Close]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL
Match: A0A6J1I4L9 (diphthamide biosynthesis protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111470942 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-39
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDS  KNN GL+P KQ+P VVA
Sbjct: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL
Match: A0A1S3BZL5 (diphthamide biosynthesis protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495198 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL DS QKNN GLEP KQ P VVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL
Match: A0A5A7SJN1 (Diphthamide biosynthesis protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00150 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL DS QKNN GLEP KQ P VVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL
Match: A0A6J1C519 (diphthamide biosynthesis protein 3-like OS=Momordica charantia OX=3673 GN=LOC111007992 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDS QKNN G++P KQ+P VVA
Sbjct: 61 DFLGDSDQKNNKGIQPSKQQPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. NCBI nr
Match: XP_022931585.1 (diphthamide biosynthesis protein 3-like [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDSVQKNNTGLEP KQRPAVVA
Sbjct: 61 DFLGDSVQKNNTGLEPSKQRPAVVA 85

[Close]

BLAST of CmaCh11G017790 vs. NCBI nr
Match: KAG7022429.1 (DPH3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1   MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
           MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 44  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 103

Query: 61  DFLGDSVQKNNTGLEPYKQRPAVVA 86
           DFLGDSVQKNNTGLEP KQRPAVVA
Sbjct: 104 DFLGDSVQKNNTGLEPSKQRPAVVA 128

[Close]

BLAST of CmaCh11G017790 vs. NCBI nr
Match: XP_038887330.1 (diphthamide biosynthesis protein 3-like [Benincasa hispida] >XP_038887331.1 diphthamide biosynthesis protein 3-like [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 5.2e-40
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDS QKNN GLEP KQ+P VVA
Sbjct: 61 DFLGDSNQKNNKGLEPSKQQPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. NCBI nr
Match: XP_022972367.1 (diphthamide biosynthesis protein 3-like [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 4.4e-39
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFLGDS  KNN GL+P KQ+P VVA
Sbjct: 61 DFLGDSDHKNNKGLQPSKQQPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. NCBI nr
Match: XP_008454889.1 (PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo] >XP_008454890.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo] >KAA0031262.1 diphthamide biosynthesis protein 3-like [Cucumis melo var. makuwa] >TYK06714.1 diphthamide biosynthesis protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.7e-39
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMDWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DFL DS QKNN GLEP KQ P VVA
Sbjct: 61 DFLDDSNQKNNKGLEPSKQHPIVVA 85

[Close]

BLAST of CmaCh11G017790 vs. TAIR 10
Match: AT2G15910.2 (CSL zinc finger domain-containing protein )

HSP 1 Score: 143.7 bits (361), Expect = 7.0e-35
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRPAVVA 86
          DF  D+ +KNN   EP  + P  VA
Sbjct: 61 DFQNDT-KKNN---EPKTRHPVAVA 81

[Close]

BLAST of CmaCh11G017790 vs. TAIR 10
Match: AT2G15910.1 (CSL zinc finger domain-containing protein )

HSP 1 Score: 140.2 bits (352), Expect = 7.7e-34
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNME 60
          MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNME
Sbjct: 1  MSYDDVEIEDMEWNEEIQAYTYPCPCGDLFQITKEDLRLGEEIANCPSCSLYITVIYNME 60

Query: 61 DFLGDSVQKNNTGLEPYKQRP 82
          DF  D+ +KNN   EP  + P
Sbjct: 61 DFQNDT-KKNN---EPKTRHP 77

The following BLAST results are available for this feature:

BLAST of CmaCh11G017790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6VUC1	3.4e-18	51.95	DPH3 homolog OS=Cricetulus griseus OX=10029 GN=DPH3 PE=3 SV=1	[more]
Q8K0W9	4.4e-18	51.95	DPH3 homolog OS=Mus musculus OX=10090 GN=Dph3 PE=1 SV=1	[more]
Q1LZC9	1.7e-17	51.95	DPH3 homolog OS=Bos taurus OX=9913 GN=DPH3 PE=3 SV=1	[more]
Q96FX2	1.7e-17	50.65	DPH3 homolog OS=Homo sapiens OX=9606 GN=DPH3 PE=1 SV=1	[more]
Q6CMG4	1.7e-17	54.67	Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / C...	[more]

BLAST of CmaCh11G017790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZW6	7.0e-43	98.82	diphthamide biosynthesis protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1I4L9	2.1e-39	91.76	diphthamide biosynthesis protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111470...	[more]
A0A1S3BZL5	4.7e-39	91.76	diphthamide biosynthesis protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495198 ...	[more]
A0A5A7SJN1	4.7e-39	91.76	Diphthamide biosynthesis protein 3-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1C519	1.1e-38	88.24	diphthamide biosynthesis protein 3-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CmaCh11G017790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931585.1	1.5e-42	98.82	diphthamide biosynthesis protein 3-like [Cucurbita moschata]	[more]
KAG7022429.1	1.5e-42	98.82	DPH3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038887330.1	5.2e-40	94.12	diphthamide biosynthesis protein 3-like [Benincasa hispida] >XP_038887331.1 diph...	[more]
XP_022972367.1	4.4e-39	91.76	diphthamide biosynthesis protein 3-like [Cucurbita maxima]	[more]
XP_008454889.1	9.7e-39	91.76	PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo] >XP_008454890....	[more]

BLAST of CmaCh11G017790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15910.2	7.0e-35	78.82	CSL zinc finger domain-containing protein	[more]
AT2G15910.1	7.7e-34	80.25	CSL zinc finger domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007872	DPH-type metal-binding domain	PFAM	PF05207	zf-CSL	coord: 4..58 e-value: 4.6E-22 score: 77.5
IPR007872	DPH-type metal-binding domain	PROSITE	PS51074	DPH_MB	coord: 2..58 score: 23.350922
IPR036671	DPH-type metal-binding domain superfamily	GENE3D	3.10.660.10	DPH Zinc finger	coord: 1..81 e-value: 4.5E-29 score: 102.0
IPR036671	DPH-type metal-binding domain superfamily	SUPERFAMILY	144217	CSL zinc finger	coord: 2..72
IPR044248	Diphthamide biosynthesis protein 3/4-like	PANTHER	PTHR21454	DPH3 HOMOLOG-RELATED	coord: 2..71
None	No IPR available	PANTHER	PTHR21454:SF2	DPH3 HOMOLOG	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G017790.1	CmaCh11G017790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding