CmaCh11G017310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G017310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr11: 11508996 .. 11509790 (-)
RNA-Seq Expression	CmaCh11G017310
Synteny	CmaCh11G017310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAAATGTAGTAACTGAAGACCCTAAAAAAGAACGAAGCTATCCCACGGTTAAAATCATCAGTAATCTAATCCAACGGCCTTCATTTCATTATCACTCACATTCTCCTCAACCGTCCGATTCACCGAGTATCGCCAACGCCAAATCGCCACCACACGATGCGTTGACTGGGAGACCATATCTTAAAATGAAATGACCCTTTAACCCATACCTTCAAAGCCACGGCGATTTTCAGTTTCACTGCACCAGCTCCCTCGTCCCCCCTCCCCTCCCACATTCGAAACCCTAAATCCACATCTCTCCTTGAAAATTTTGCACCTGATCACGCTGGGATTGGTCAGCTACCGGTGTTTTTCTGGGTTAGATTCCCGTTCTCTCTGGCTAGGTTCATTTCAGGGTTTTACTTATTTACTTCTTCAGTGTTCTTAATTGGTTGGATCTTGAGATGTTATTGCTTTAATCGATGCCTTCTTTCTTGCCCTGTTCTTTATTTATCTGTGAATTGTATCTTCAATTTTTGTTTATCGCCTGTTTTGGGTTTCTTTTTGAATGAGGGTCTGTTGTGAAATGAATTCTTTCATAGGGAGTGTTATTGCTCTTCGATTATTTTATTGCTTGTTATGTATTTCTTTCTCTTTATTTATTGAGGATCTTCCCTTTCGCACTATCCAAGATGATCGTTTTGAGATGCATCCAATCATTGAGAACTCAAATGTTATAATTATGCTTTATCCTGCAGTTCCTATATTTAGTTTCTTCAGAAGGGGTACTGCTTTTGTGGGGTTCTTGA

mRNA sequence

ATGCAAGAAAATGTAGTAACTGAAGACCCTAAAAAAGAACGAAGCTATCCCACGGTTAAAATCATCAGTAATCTAATCCAACGGCCTTCATTTCATTATCACTCACATTCTCCTCAACCGTCCGATTCACCGAGTATCGCCAACGCCAAATCGCCACCACACGATGCTTTCACTGCACCAGCTCCCTCGTCCCCCCTCCCCTCCCACATTCGAAACCCTAAATCCACATCTCTCCTTGAAAATTTTGCACCTGATCACGCTGGGATTGGTCAGCTACCGGTGTTTTTCTGGTTCCTATATTTAGTTTCTTCAGAAGGGGTACTGCTTTTGTGGGGTTCTTGA

Coding sequence (CDS)

ATGCAAGAAAATGTAGTAACTGAAGACCCTAAAAAAGAACGAAGCTATCCCACGGTTAAAATCATCAGTAATCTAATCCAACGGCCTTCATTTCATTATCACTCACATTCTCCTCAACCGTCCGATTCACCGAGTATCGCCAACGCCAAATCGCCACCACACGATGCTTTCACTGCACCAGCTCCCTCGTCCCCCCTCCCCTCCCACATTCGAAACCCTAAATCCACATCTCTCCTTGAAAATTTTGCACCTGATCACGCTGGGATTGGTCAGCTACCGGTGTTTTTCTGGTTCCTATATTTAGTTTCTTCAGAAGGGGTACTGCTTTTGTGGGGTTCTTGA

Protein sequence

MQENVVTEDPKKERSYPTVKIISNLIQRPSFHYHSHSPQPSDSPSIANAKSPPHDAFTAPAPSSPLPSHIRNPKSTSLLENFAPDHAGIGQLPVFFWFLYLVSSEGVLLLWGS

Homology

[Close]

BLAST of CmaCh11G017310 vs. NCBI nr
Match: KAG6588681.1 (Cysteine proteinase RD21A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 56  AFTAPAPSSPLPSHIRNPKSTSLLENFAPDHAGIGQLPVFFWFLYLVSSEGVLLLWGS 114
           +FTAPAPSSPLPSHIRNPKSTSLLENFAPDHAGIGQLPVFFWFLYLVSSEGVLL+WGS
Sbjct: 484 SFTAPAPSSPLPSHIRNPKSTSLLENFAPDHAGIGQLPVFFWFLYLVSSEGVLLMWGS 541

The following BLAST results are available for this feature:

BLAST of CmaCh11G017310 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G017310 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G017310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588681.1	2.0e-23	96.55	Cysteine proteinase RD21A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh11G017310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G017310.1	CmaCh11G017310.1	mRNA