CmaCh11G016610 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G016610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein PELPK1-like isoform X2
LocationCma_Chr11: 10949474 .. 10950959 (-)
RNA-Seq ExpressionCmaCh11G016610
SyntenyCmaCh11G016610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGTCTTTGTTTCTCTACTTTTGTATTGTGCCTTATATTGAGTGGTTTTATGTTATTGAGCTTTGATTCTTCAATTCAGAATGTGAGTGCAAGAAATCTTTTAGAGATGTCATTACCGAAAGTACCTAAAGAGCTTTCGAAACTCGAAATACCCACTTCACCAAAGTTTGATAATCAGTTGCCTCATTATTATATGTTATATGATTGACATGTTCCATTTTAATCATATACTTGAGTTAATGAGACTGAGGATTGGATGTTGTGTGATTAGAATACGCCATTATGACAATCAGACATGGATTACTGAGATCGATAATCATATTGAATAAATGATAAAAGATATGGATTCTAGTTGTCACGCTCATACATTTTTAATCATGTGGAGTCATGATCTTGACACGCTCATGACAAGTTTTAAAGGAAATACAAGCCCCATTCACATGTTTCGCTTGTCTTCATGACTTCTTCAGACCTTAGGTGAGGTTCTCTTTTGTCAATCGAACACAACTCATACGATATCTATGCTTTTTGAGTCATACATGCTTGGGTATTAGAACTGCAATATGTTCCTTCGGAGTACAAAAAGCATTTGGCATAGACTAATTTTGCCTATAGGGAAAAGTCCCACTTTAAAATTTTTTACATGGTTAGTTTGAATGGGATCCTCGGTTCTAGGGAATTTAATTGCTCGATTCCTTCACCAAACTTGTAATCCTTCTCCTTAAAAGGACAAAAACCATTTCATTAAGTGAACCATAGAATGAGAGTTTTGAAAAAAATTTAAGAACACTTATTAAAAAAGTTTTCAGCTCGTTTTCACTCGTCTCTTTACTTTTGGACATTTGGTTAGATGAATGGTCTCGGTTTTGGAAGCATTGTTAGCTTGAAAGGTTGATGTTTTGGAAGTTTTGATTGAGTGAAAGGTTTTGTTTCGAAAATATTGACAGGTAGATAGTTCTAATTTCAAAATATGATTTTTCTTATGGAAAAGAAATTTAAAAGCTAGATTTGAGAAAACGCTCATTTGCTCCTTACTTATTTTTCCTTTTTAAAAATGTTTTAGAAGTATATGTCGATAGAAATAAAAGAACCTCATTGTTAATGCATAGTTTAAATACGGAGAGATACGTGTACCTTAAAAGTTTTATTTTATTTTATTATTTATATTAGATAATCATAGATAGTACATCTAAGGTTACAAAGTACAAACGAGTGTTTGATCAGTTTTTCTTAATAATTTTTGCCGATTCAAGCTTTCTGACTTTTTCAGCACACGTTTTCTTTTCAGAAACTACGACATCCAGTTCAAAGATACGTCCCAAACAGTCTTTCACCTCAATATGGAGGCGGAAGGCCAGGTCTTCACCCTTCAGCTCCATAAACCAACCACATTTAATGCTCTTGTATTTGAAACTCTCCTTGTGTATGAGGTTGTAGTCCTCCACGGCAAACTTTGCAATATTTTGCACGCAGACCTCTGA

mRNA sequence

ATGGTTAGTCTTTGTTTCTCTACTTTTGTATTGTGCCTTATATTGAGTGGTTTTATGTTATTGAGCTTTGATTCTTCAATTCAGAATGTGAGTGCAAGAAATCTTTTAGAGATGTCATTACCGAAAGTACCTAAAGAGCTTTCGAAACTCGAAATACCCACTTCACCAAAAAACTACGACATCCAGTTCAAAGATACGTCCCAAACAGTCTTTCACCTCAATATGGAGGCGGAAGGCCAGGTCTTCACCCTTCAGCTCCATAAACCAACCACATTTAATGCTCTTGTATTTGAAACTCTCCTTGTGTATGAGGTTGTAGTCCTCCACGGCAAACTTTGCAATATTTTGCACGCAGACCTCTGA

Coding sequence (CDS)

ATGGTTAGTCTTTGTTTCTCTACTTTTGTATTGTGCCTTATATTGAGTGGTTTTATGTTATTGAGCTTTGATTCTTCAATTCAGAATGTGAGTGCAAGAAATCTTTTAGAGATGTCATTACCGAAAGTACCTAAAGAGCTTTCGAAACTCGAAATACCCACTTCACCAAAAAACTACGACATCCAGTTCAAAGATACGTCCCAAACAGTCTTTCACCTCAATATGGAGGCGGAAGGCCAGGTCTTCACCCTTCAGCTCCATAAACCAACCACATTTAATGCTCTTGTATTTGAAACTCTCCTTGTGTATGAGGTTGTAGTCCTCCACGGCAAACTTTGCAATATTTTGCACGCAGACCTCTGA

Protein sequence

MVSLCFSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPKNYDIQFKDTSQTVFHLNMEAEGQVFTLQLHKPTTFNALVFETLLVYEVVVLHGKLCNILHADL
Homology
[Close]
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match: A0A6J1JIS8 (protein PELPK2-like OS=Cucurbita maxima OX=3661 GN=LOC111486194 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS F L+SFD  +  VSAR+LLEM LPKVP+EL K E+P+  K
Sbjct: 5  FSTFVYSLILSAFTLMSFDCFVTAVSARHLLEMPLPKVPEELPKPEVPSLSK 56

[Close]
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match: A0A6J1EM16 (protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434585 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS FML++FD  +  VSAR+LLE  LPKVP+EL K E+P   K
Sbjct: 5  FSTFVFPLILSAFMLMNFDFFVMTVSARHLLESPLPKVPEELPKPEVPILSK 56

[Close]
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match: A0A6J1CK42 (periaxin-like OS=Momordica charantia OX=3673 GN=LOC111012169 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  MVSLCFSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSP 57
          M SL FSTFVL L++S F+ +S DS I  ++AR+LLE   PK+P+EL K EIPT P
Sbjct: 1  MASLRFSTFVLPLLVSAFIWMSCDSLIMTINARHLLETPSPKIPEELPKPEIPTLP 56

[Close]
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match: A0A6J1CLX4 (uncharacterized protein LOC111012168 OS=Momordica charantia OX=3673 GN=LOC111012168 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 1  MVSLCFSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVP-KELSKLEIPTSPK 58
          M SLCFSTFVL L++S F+ +S DS I  VSAR+LLE   PKV  +EL K EIPT PK
Sbjct: 1  MASLCFSTFVLPLLVSTFIWMSCDSLIMTVSARHLLETPSPKVVLEELPKPEIPTLPK 58

[Close]
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match: A0A6J1EI80 (protein PELPK1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434584 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS  ML+SFD  +  VSAR+LLE  +PKVP+EL K E+P+  K
Sbjct: 5  FSTFVFSLILSVSMLMSFDCFVMTVSARHLLETPVPKVPEELPKPEVPSLSK 56

[Close]
BLAST of CmaCh11G016610 vs. NCBI nr
Match: KAG6588752.1 (Protein PELPK1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS FML+SFD  +  VSAR+LLE+ LPKVP+EL K E+P   K
Sbjct: 5  FSTFVFPLILSAFMLMSFDFFVMTVSARHLLELPLPKVPEELPKPEVPILSK 56

[Close]
BLAST of CmaCh11G016610 vs. NCBI nr
Match: XP_022989001.1 (protein PELPK2-like [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-05
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS F L+SFD  +  VSAR+LLEM LPKVP+EL K E+P+  K
Sbjct: 5  FSTFVYSLILSAFTLMSFDCFVTAVSARHLLEMPLPKVPEELPKPEVPSLSK 56

[Close]
BLAST of CmaCh11G016610 vs. NCBI nr
Match: XP_022927803.1 (protein PELPK1-like [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-05
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  LILS FML++FD  +  VSAR+LLE  LPKVP+EL K E+P   K
Sbjct: 5  FSTFVFPLILSAFMLMNFDFFVMTVSARHLLESPLPKVPEELPKPEVPILSK 56

[Close]
BLAST of CmaCh11G016610 vs. NCBI nr
Match: XP_023530175.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-05
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 1  MVSLCFSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          M ++ FSTFV  LILS FM +SFD  +  V+AR+LLE+ LPKVP+EL K E+P+  K
Sbjct: 1  MATIYFSTFVSSLILSAFMFMSFDGFVTAVNARHLLEIPLPKVPEELLKPEVPSLSK 57

[Close]
BLAST of CmaCh11G016610 vs. NCBI nr
Match: KAG6588750.1 (Protein PELPK1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 6  FSTFVLCLILSGFMLLSFDSSIQNVSARNLLEMSLPKVPKELSKLEIPTSPK 58
          FSTFV  L+LS FML+ FD  +  VSAR+LLE  LPKVP+EL K E+P+  K
Sbjct: 5  FSTFVFPLVLSVFMLMRFDCFVMTVSARHLLETPLPKVPEELPKPEVPSLSK 56

The following BLAST results are available for this feature:
BLAST of CmaCh11G016610 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh11G016610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JIS81.7e-0563.46protein PELPK2-like OS=Cucurbita maxima OX=3661 GN=LOC111486194 PE=4 SV=1[more]
A0A6J1EM164.8e-0561.54protein PELPK1-like OS=Cucurbita moschata OX=3662 GN=LOC111434585 PE=4 SV=1[more]
A0A6J1CK421.4e-0457.14periaxin-like OS=Momordica charantia OX=3673 GN=LOC111012169 PE=4 SV=1[more]
A0A6J1CLX41.8e-0462.07uncharacterized protein LOC111012168 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1EI802.4e-0459.62protein PELPK1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434584 PE=... [more]
BLAST of CmaCh11G016610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588752.12.0e-0563.46Protein PELPK1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022989001.13.4e-0563.46protein PELPK2-like [Cucurbita maxima][more]
XP_022927803.19.9e-0561.54protein PELPK1-like [Cucurbita moschata][more]
XP_023530175.19.9e-0556.14protein PELPK1-like [Cucurbita pepo subsp. pepo][more]
KAG6588750.12.2e-0459.62Protein PELPK1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh11G016610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G016610.1CmaCh11G016610.1mRNA