CmaCh11G015880 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G015880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr11: 10410994 .. 10411368 (+)
RNA-Seq Expression	CmaCh11G015880
Synteny	CmaCh11G015880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCAGTTTCCACCAGCAAGAATCGAAGATTCCAGACCTCCTCCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTTCCATGACGAACTCACCGCCTCATCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACTCCAACTCCAACGCCGCTGAAATGGAAGACGACGGAAGAAACAACGGTCGCCGCGGAGCCACAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGAGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAAATTTACAAATTGACGAAGCCTGTGATCTTTGTGAAGTAA

mRNA sequence

ATGGCGAAATCAGTTTCCACCAGCAAGAATCGAAGATTCCAGACCTCCTCCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTTCCATGACGAACTCACCGCCTCATCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACTCCAACTCCAACGCCGCTGAAATGGAAGACGACGGAAGAAACAACGGTCGCCGCGGAGCCACAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGAGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAAATTTACAAATTGACGAAGCCTGTGATCTTTGTGAAGTAA

Coding sequence (CDS)

ATGGCGAAATCAGTTTCCACCAGCAAGAATCGAAGATTCCAGACCTCCTCCTTCTCCGATTCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTTCCATGACGAACTCACCGCCTCATCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACTCCAACTCCAACGCCGCTGAAATGGAAGACGACGGAAGAAACAACGGTCGCCGCGGAGCCACAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGAGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAAATTTACAAATTGACGAAGCCTGTGATCTTTGTGAAGTAA

Protein sequence

MAKSVSTSKNRRFQTSSFSDSEIDVAIQLIHLSEDSDFHDELTASSTSCSDDKSLASASNSNSNSNAAEMEDDGRNNGRRGATTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFVK

Homology

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BLAST of CmaCh11G015880 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.7 bits (509), Expect = 7.5e-48
Identity = 112/124 (90.32%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MAKSVSTSKNRRFQTSSFSDSEIDVAIQLIHLSEDSDFHDELTASSTSCSDDKSLASASN 60
           MA+SVSTS+NRRFQTS FSDSEIDVAIQLIHLSEDSD+HDEL ASSTSCSDDKSLASA  
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASA-- 60

Query: 61  SNSNSNAAEMEDDGRNNGRRGATTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV 120
             SNSNA EMEDDGRNNGRRG  TTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV
Sbjct: 61  --SNSNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV 120

Query: 121 IFVK 125
           IFVK
Sbjct: 121 IFVK 120

[Close]

BLAST of CmaCh11G015880 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-33
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MAKSVSTSKNRRFQTSSFSDSEIDVAIQLIHLSEDSDFHDELTASSTSCSDDKSLASASN 60
           MAKS+S+ KNRRF+TS FSDSEIDVAIQL+HLSEDSD+     ASSTSCSDDKS+ASA+ 
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASAT- 60

Query: 61  SNSNSNAAEMEDDG-RNNGRRGATTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYK 120
             S +NAA MEDDG  ++ RRGAT  P    IEDI+EEIGD +NRRRRKRRSRSVYEIYK
Sbjct: 61  --SATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYK 120

Query: 121 LTKPVIFVK 125
           LTKP I VK
Sbjct: 121 LTKPFISVK 126

The following BLAST results are available for this feature:

BLAST of CmaCh11G015880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G015880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G015880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588821.1	7.5e-48	90.32	hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571728.1	4.0e-33	72.09	hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh11G015880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G015880.1	CmaCh11G015880.1	mRNA