CmaCh11G015510 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G015510
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionlight-regulated protein-like
LocationCma_Chr11: 10088857 .. 10092292 (-)
RNA-Seq ExpressionCmaCh11G015510
SyntenyCmaCh11G015510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACGTAACAGGCCAAAACGGACACTACCTGCTAGTAGTAGTCTTTGGTTATTACAACAAAATGAGTTGAAAAGTATCATACCTGAGGTATGTTGTCTTCATGCACGAGCCAAAGAACTTGATGCTAGAACAAGTCTTCGATCTAATCCCGACGTTCACATGCACGAGCCAAAGAACTTGATGCTAGAACAAGTCTTCGATCTAATCCCGACGATGAACGGTTGATGTAATTTAGATATAATGAGAAATATCTTGGGGAGATTCACAAATATCTCCAAGGTGATGGGAAAGTGAAAGCTTCCTCTAAATGAATAAATATCAAACAAAGAGGATGCAAAGGTATCTTATCCAAAGGAACAGCCTCCAATCTCTGACATTTCAACACAACCACTGTTCTTTATAAAGGCTAACGAGTAAGAGGCTTCTACTCATTCAAATCTCAAGCTTTAACATATCATAGCGTAATGCAAGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTACCCTCCTTAACACCTTCCAACAACCTTTCTCATTTTCCCTCGATCCGCTCTCTCTCTCTTCCTCGTGCCGTTCAACAAGAAAAGTAGTTACCGCTGTCGCTTACGATGCCTCGGTGGTTGATTACAGTTCTGTAATCTCGTAAGTCATTTTCTCTCACATGCTTCTCTTTTATGTTGAACTTAAGTTTGAACCATTCATCGATATATTTAAGTGTCCATGGTGTAAACACTAAATTTATGTCATTAATAATAGTTTTAAGATCGAAACTGTGTAGATTTACTCCGGCCATAAGCTCGTATGGTTTTGAGTTCTAATGATTATGATCGGGAGAATTAAATCGTCAAATTTTAAAATGATAATCGACGTCTTATTTAATAAAGTATGCTTGAATTGACTCGTATGCTCAGGTTTGAGACAAGGTGTAATAAACTATATTCGAATTGACCCGTATGCTTGAGTTCGAGTTAGAGTATAATAAACTATGCTTGAACTGACCCGTATGCTCAAGTTCGAGTTAGTGATATGGAAAATCAACCCAAGGGAAAGTATGGAACGGATTACCTTGATGATTAAGATTGAGAGTAAAGAAAACTCGTTTCTAAACTCGTGATTCGAATCACTCCACAAGAGGTTTGATTAATACCACTTAAATGACTCTACATGCAAATTCTAAACACAAGAATTTGCAAGGAAAGTTTAGCTCTCAACAAAGCTGAAATAGAAATTTTATTCTTAATTCCAAAATCTGATGTCTAATCAAAGAAAAGAAGGTTTTATATAGCTCTTACAACCTTAACCTATGTGATATATAACTCCCAAATTAAATGAGCTAGTAAATGAAAAATACTCATAACCTCCATATTAAAAAAAGAAGGCTTTATATAGCCCTTACAACCTTAACCTATGTGACATATATCTCCCAAATTAAATAGGCTAGTAAATGAAAAATACTCATAACCTCTCTACTAAAATGGCTAGTTAATGGTGGAATATAGTAACCTAGGTGGGTTACAATATAACCTTTAACTCCTATATTTAAAACTAGCTTAAATATGACAAACAAATAGTTAAACTATAATTAAATAATGCAATTAATAAAATGTGCTTATTGACTCATCCTTGAACTAGTTTCATAAATTCAGCGGAGTTCATTAAATGCAACTTAAAGTAAATTTAATTCATCTCTTTCTTGAAGCTCAACTTTGCACAACATATAAGAGAGATCTCCAACGTCTTTTAGAATTTCCTTTGATGAGTTAATCATAGCTTGAATATAACTGTATAAGGTTTGTTGTAGCTTCTTAGTTCTCGTCCTTGTAATTGGACTTTGAGGTATGAAAATTCCTTGGTCGTGGTTCATATCAGTTAGGGTATAATAAAATATACTTAAACTGACCTGTATGCTCGGGTTCGAGACAATGTGTAATAAACTATACTCAAGTTGACCTGTATGCTCGGGTTCGAGACAGTGTGTAATAAACTATACTCAAGTTGACCTGTATGTTCAAGTTCGAGTTAGGGTGTAATAAACTATGCTTGAATTGACCCATATGCTCAGGTTCAAGTTAAAGTATAATAAACTATGTTCAAATTGACTCGTATGCTCGAGTTCGAGACATGGTGTAATAAACTATGCTCAAATTGACCAATATGCTCGAATTCGAGTTAGTTTGTAATAAATTATGCTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTAATACCCTTAAAATTTTTAATTTTTTTTTTTTTTTTATAAATGTTAAAAATATTTTTAAGATTATTATTAAATTTCAAAAGTATTAATAAACTTAAAATTTTATTTAATAATAAGAATATTTTAAAATATTAATGAAAATTTAAAAATATTTATTATTATTCATATTAAATATTATATTAATATGATTATTATTATTATGTGCAGAGTTTTTCCAGGGGAGGCTTGCGATGATCTTGGCGGAGAATTTTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAAATCCCCCCGCTATGCT

mRNA sequence

ATGATACGTAACAGGCCAAAACGGACACTACCTGCTAGTAGTAGTCTTTGGTTATTACAACAAAATGAGTTGAAAAGTATCATACCTGAGCATTGTTGTTCCTCCCCTTCTACCCTCCTTAACACCTTCCAACAACCTTTCTCATTTTCCCTCGATCCGCTCTCTCTCTCTTCCTCGTGCCGTTCAACAAGAAAAGTAGTTACCGCTGTCGCTTACGATGCCTCGGTGGTTGATTACAGTTCTGTAATCTCAGTTTTTCCAGGGGAGGCTTGCGATGATCTTGGCGGAGAATTTTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAAATCCCCCCGCTATGCT

Coding sequence (CDS)

ATGATACGTAACAGGCCAAAACGGACACTACCTGCTAGTAGTAGTCTTTGGTTATTACAACAAAATGAGTTGAAAAGTATCATACCTGAGCATTGTTGTTCCTCCCCTTCTACCCTCCTTAACACCTTCCAACAACCTTTCTCATTTTCCCTCGATCCGCTCTCTCTCTCTTCCTCGTGCCGTTCAACAAGAAAAGTAGTTACCGCTGTCGCTTACGATGCCTCGGTGGTTGATTACAGTTCTGTAATCTCAGTTTTTCCAGGGGAGGCTTGCGATGATCTTGGCGGAGAATTTTGTGGAGCTGAGTTTCTAAATGGCGTTTTCTAA

Protein sequence

MIRNRPKRTLPASSSLWLLQQNELKSIIPEHCCSSPSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLGGEFCGAEFLNGVF
Homology
[Close]
BLAST of CmaCh11G015510 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 64  RKVVTAVAYDASVVDYSSVISVFPGEACDDLGGEFCGAE 103
           R    AVA +A+ VDYSS ISVFP EACD +GGE C  +
Sbjct: 37  RAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQ 75

[Close]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match: A0A6J1EPG4 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 55/129 (42.64%), Postives = 57/129 (44.19%), Query Frame = 0 

Query: 35  SPSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVIS---------- 94
           +PS  L+ F    S S    S SSS RST K VTAVAYD SVVDYSSVIS          
Sbjct: 17  TPSNNLSHFP---SSSPSIRSHSSSRRSTIKAVTAVAYDTSVVDYSSVISVFPAEACETI 76

Query: 95  ---------------------------------------------VFPGEACDDLGGEFC 109
                                                        VFPGEACDDLGGEFC
Sbjct: 77  GGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFC 136

[Close]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 36  PSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLG 95
           PS+ L++  +P  F L   S  SS RS+ K   +V YD SVVDYSS ISVFP EAC+ +G
Sbjct: 31  PSSTLSS-NKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIG 90

Query: 96  GEFCGAE 103
           GE CG E
Sbjct: 91  GEACGWE 96

[Close]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match: C9E9F1 (GA-like protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 36  PSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLG 95
           PS+ L++  +P  F L   S  SS RS+ K   +V YD SVVDYSS ISVFP EAC+ +G
Sbjct: 11  PSSTLSS-NKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIG 70

Query: 96  GEFCGAE 103
           GE CG E
Sbjct: 71  GEACGWE 76

[Close]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match: W9RP05 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008688 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 36  PSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLG 95
           P T      QP  FS + L  S++ RS  K  TAV YD S VDY+SV SVFP EAC+ +G
Sbjct: 13  PLTPSKNISQPAIFSPNLLDSSAARRSVVK-ATAVTYDTSTVDYNSVFSVFPAEACETIG 72

Query: 96  GEFCGA 102
           GE C A
Sbjct: 73  GEACWA 77

[Close]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 37  STLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLGG 96
           STL N+    F F       +SS RS  K   +V YD SVVDYSS ISVFP EAC+ +GG
Sbjct: 17  STLSNSSHSHFPFI--TFGSNSSRRSAIKATASVVYDTSVVDYSSAISVFPAEACETIGG 76

Query: 97  EFC 100
           E C
Sbjct: 77  EAC 77

[Close]
BLAST of CmaCh11G015510 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 57/129 (44.19%), Postives = 60/129 (46.51%), Query Frame = 0 

Query: 35  SPSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVIS---------- 94
           +PS  L+ F  P S S+   SLSSS RST K VTAVAYD SVVDYSSVIS          
Sbjct: 17  TPSNNLSHF--PSSPSI--RSLSSSRRSTIKAVTAVAYDTSVVDYSSVISVFPAEACETI 76

Query: 95  ---------------------------------------------VFPGEACDDLGGEFC 109
                                                        VFPGEACDDLGGEFC
Sbjct: 77  GGEACWANIFPEVRLQASADSAEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFC 136

[Close]
BLAST of CmaCh11G015510 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 55/129 (42.64%), Postives = 57/129 (44.19%), Query Frame = 0 

Query: 35  SPSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVIS---------- 94
           +PS  L+ F    S S    S SSS RST K VTAVAYD SVVDYSSVIS          
Sbjct: 17  TPSNNLSHFP---SSSPSIRSHSSSRRSTIKAVTAVAYDTSVVDYSSVISVFPAEACETI 76

Query: 95  ---------------------------------------------VFPGEACDDLGGEFC 109
                                                        VFPGEACDDLGGEFC
Sbjct: 77  GGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFC 136

[Close]
BLAST of CmaCh11G015510 vs. NCBI nr
Match: KAG6588864.1 (Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-08
Identity = 59/161 (36.65%), Postives = 68/161 (42.24%), Query Frame = 0 

Query: 18  LLQQNELKSIIPEHCCS-SPSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASV 77
           ++ Q  L  ++P    S +PS  L+ F  P S S+   SLSSS RST K VTAVAYD SV
Sbjct: 13  IIMQAVLSIVVPPLLPSLTPSNNLSHF--PSSPSI--RSLSSSRRSTIKAVTAVAYDTSV 72

Query: 78  VDYSSVI----------------------------------------------------- 109
           VDYSSVI                                                     
Sbjct: 73  VDYSSVIINYARIDLYTRVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVA 132

[Close]
BLAST of CmaCh11G015510 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 36  PSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLG 95
           PS+ L++  +P  F L   S  SS RS+ K   +V YD SVVDYSS ISVFP EAC+ +G
Sbjct: 31  PSSTLSS-NKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIG 90

Query: 96  GEFCGAE 103
           GE CG E
Sbjct: 91  GEACGWE 96

[Close]
BLAST of CmaCh11G015510 vs. NCBI nr
Match: ACV88397.1 (GA-like protein, partial [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 36  PSTLLNTFQQPFSFSLDPLSLSSSCRSTRKVVTAVAYDASVVDYSSVISVFPGEACDDLG 95
           PS+ L++  +P  F L   S  SS RS+ K   +V YD SVVDYSS ISVFP EAC+ +G
Sbjct: 11  PSSTLSS-NKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIG 70

Query: 96  GEFCGAE 103
           GE CG E
Sbjct: 71  GEACGWE 76

The following BLAST results are available for this feature:
BLAST of CmaCh11G015510 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q032002.1e-0458.97Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ... [more]
BLAST of CmaCh11G015510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EPG44.9e-0942.64light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 ... [more]
A0A0A0L8G92.7e-0753.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1[more]
C9E9F12.7e-0753.73GA-like protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
W9RP051.9e-0551.52Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008688 PE=4 SV=1[more]
A0A5A7VMP83.3e-0552.38Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of CmaCh11G015510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023531712.12.1e-0944.19light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022928578.11.0e-0842.64light-regulated protein-like [Cucurbita moschata][more]
KAG6588864.18.6e-0836.65Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_004145699.25.6e-0753.73light-regulated protein, chloroplastic [Cucumis sativus][more]
ACV88397.15.6e-0753.73GA-like protein, partial [Cucumis sativus][more]
BLAST of CmaCh11G015510 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009856Light regulated Lir1PFAMPF07207Lir1coord: 56..103
e-value: 7.6E-14
score: 52.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G015510.1CmaCh11G015510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast